Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 8.3e-185 650.2 324 100.0
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 6.0e-159 564.3 325 87.1
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 1.9e-152 542.7 310 87.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 8.2e-148 527.3 332 79.8
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.1e-141 506.9 320 80.3
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 3.4e-130 468.8 339 72.3
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 1.7e-129 466.5 347 70.0
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 4.2e-128 461.8 332 72.3
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-127 459.5 337 70.6
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 2.1e-127 459.5 337 70.6
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 4.7e-127 458.4 337 70.3
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.4e-126 456.8 332 71.7
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 3.9e-126 455.3 347 68.0
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 4.1e-123 445.3 337 68.8
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 8.5e-121 437.6 357 64.7
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 5.5e-120 434.9 357 63.9
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 5.5e-120 434.9 357 63.9
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.4e-118 430.3 355 64.2
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 2.3e-118 429.5 356 64.3
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 5.7e-117 424.9 356 62.6
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 2.2e-116 422.9 337 65.0
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 4.8e-116 421.8 357 62.2
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 4.8e-116 421.8 360 63.6
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 5.9e-114 414.8 356 62.1
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 4.2e-112 408.7 359 61.0
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.2e-106 390.6 381 56.7
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 1.7e-105 386.7 358 58.7
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 2.9e-105 386.0 359 59.6
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 8.5e-105 384.4 354 59.0
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 5.5e-104 381.7 358 57.3
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 5.5e-104 381.7 358 57.3
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 5.5e-104 381.7 358 57.0
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 9.4e-104 380.9 356 56.5
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.6e-103 380.2 357 58.5
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 4.7e-103 378.6 359 57.4
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 1.0e-102 377.5 356 55.9
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.8e-102 376.7 359 57.7
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 2.3e-102 376.3 357 58.0
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 3.0e-102 375.9 358 58.4
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 4.0e-102 375.6 358 58.4
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 4.0e-102 375.6 358 57.0
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 5.2e-102 375.2 358 56.1
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 6.8e-102 374.8 358 56.4
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 8.8e-102 374.4 362 56.6
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.2e-101 374.0 358 57.8
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.6e-101 372.9 343 59.2
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 2.6e-101 372.9 358 56.7
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 2.6e-101 372.9 358 57.8
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 3.4e-101 372.5 356 54.8
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 4.4e-101 372.1 363 56.2
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 9.8e-101 370.9 357 56.6
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 1.3e-100 370.5 360 55.8
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 1.3e-100 370.5 360 55.6
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 1.7e-100 370.2 351 55.8
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 3.7e-100 369.0 360 56.4
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 4.8e-100 368.6 358 57.5
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 6.3e-100 368.2 358 56.7
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.1e-99 365.9 358 55.9
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 3.1e-99 365.9 357 55.5
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 4.1e-99 365.5 399 52.6
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 1.2e-98 364.0 359 54.9
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.6e-98 363.6 376 52.1
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 2.0e-98 363.2 359 52.1
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.0e-98 363.2 355 54.9
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 5.9e-98 361.7 359 54.9
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 5.9e-98 361.7 358 54.7
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 5.9e-98 361.7 358 55.3
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.7e-98 361.3 358 54.7
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 1.3e-97 360.5 359 56.8
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 1.7e-97 360.1 353 55.5
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 1.7e-97 360.1 358 53.9
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.9e-97 359.4 358 53.6
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 6.6e-97 358.2 359 55.2
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 1.1e-96 357.5 358 54.7
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 1.5e-96 357.1 360 52.2
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.9e-96 356.7 378 52.1
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 5.5e-96 355.1 361 53.2
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 9.5e-96 354.4 360 53.3
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 1.2e-95 354.0 360 54.7
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 2.1e-95 353.2 358 53.9
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 3.6e-95 352.4 360 53.3
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 6.1e-95 351.7 358 52.0
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 8.0e-95 351.3 359 52.4
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.3e-94 349.7 354 52.3
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 4.0e-94 349.0 333 55.6
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.0e-94 349.0 354 54.0
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.2e-93 347.4 358 53.1
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 1.5e-93 347.1 442 48.0
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.5e-93 347.1 366 51.1
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 2.6e-93 346.3 357 51.5
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 3.4e-93 345.9 358 52.8
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.4e-93 345.9 350 53.7
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 3.4e-93 345.9 358 52.0
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.5e-93 344.7 345 53.6
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.3e-92 344.0 371 50.4
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 1.7e-92 343.6 365 51.2
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 2.8e-92 342.8 346 52.9
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.9e-92 342.0 358 51.4
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 6.3e-92 341.7 361 51.8
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 8.3e-92 341.3 365 50.4
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.1e-91 340.9 358 51.1
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 1.4e-91 340.5 339 56.0
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 1.8e-91 340.1 358 51.7
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 3.5e-90 335.9 347 53.3
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.8e-90 334.7 358 50.6
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 1.7e-89 333.6 360 52.5
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 2.3e-89 333.2 359 51.0
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 3.9e-89 332.4 359 50.1
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 1.1e-88 330.9 359 49.9
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 4.3e-88 328.9 359 50.1
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 4.3e-88 328.9 359 50.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.6e-87 327.0 386 47.7
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.6e-87 327.0 386 47.7
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 6.8e-86 321.6 345 49.6
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 2.0e-85 320.1 345 50.4
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 9.8e-85 317.8 340 52.9
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 4.9e-84 315.5 316 53.8
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.9e-83 313.5 343 51.6
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 3.2e-83 312.8 361 48.5
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.4e-83 312.0 334 51.8
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 7.0e-83 311.6 357 50.7
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 9.2e-83 311.2 333 52.0
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.6e-82 310.5 332 50.9
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 6.0e-82 308.5 345 50.7
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 4.3e-80 302.4 344 49.1
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 7.3e-80 301.6 333 50.2
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 4.0e-78 295.8 320 50.3
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 3.4e-77 292.7 318 49.4
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 3.4e-77 292.7 319 49.2
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 4.4e-77 292.4 320 49.1
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 2.4e-75 286.6 321 50.5
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 6.0e-74 282.0 249 56.6
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.4e-70 270.8 346 46.0
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 3.1e-70 269.6 272 53.3
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.3e-68 264.2 248 55.6
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.4e-67 260.8 260 56.2
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 2.4e-67 260.0 353 41.9
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 9.2e-67 258.1 285 50.2
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.3e-64 249.2 270 51.9
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.3e-64 248.4 229 58.1
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 1.5e-61 240.7 365 39.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.6e-61 240.0 233 54.1
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 3.4e-61 239.6 369 40.1
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 2.4e-59 233.4 252 48.8
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 4.2e-59 232.6 244 51.2
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 5.4e-59 232.3 337 44.5
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.8e-54 217.2 204 56.4
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 1.2e-53 214.5 375 37.9
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.5e-45 187.6 192 51.6
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 1.5e-40 171.0 156 52.6
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 5.6e-40 169.1 271 40.2
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 4.0e-38 162.9 335 36.1
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 7.9e-34 148.7 316 36.4
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 8.4e-28 128.6 331 29.3
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 2.6e-21 107.1 254 33.1
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 5.9e-21 105.9 321 27.1
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 2.9e-20 103.6 254 32.3
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.2e-19 100.1 73 60.3
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.4e-14 84.7 97 53.6
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 2.4e-14 84.0 68 58.8
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 6.9e-14 82.4 68 63.2
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 7.7e-13 79.0 168 34.5
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 7.7e-13 79.0 80 55.0
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.0e-12 76.3 96 51.0
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 8.5e-12 75.5 86 53.5
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.7e-10 70.5 80 51.2
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 1.1e-08 65.1 51 58.8
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.4e-06 58.2 43 67.4
MCO07G315 Micromonas commoda HOM05D003933 ORTHO05D268710 1.4e-06 58.2 225 27.6
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.1e-06 56.6 65 52.3


User provided reference genes

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