Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G250 Trifolium pratense HOM05D001475 ORTHO05D012622 2.6e-55 218.4 105 100.0
Medtr4g058000 Medicago truncatula HOM05D001475 ORTHO05D001525 2.6e-34 148.7 107 67.3
Glyma.12G078000 Glycine max HOM05D001475 ORTHO05D001525 4.2e-29 131.3 105 59.0
Glyma.11G196100 Glycine max HOM05D001475 ORTHO05D001525 9.4e-29 130.2 105 59.0
Phvul.011G082400 Phaseolus vulgaris HOM05D001475 ORTHO05D001525 8.2e-25 117.1 109 53.2
Lalb_Chr19g0137101 Lupinus albus HOM05D001475 ORTHO05D001525 5.0e-22 107.8 106 55.7
arahy.Tifrunner.gnm1.ann1.Q0RQ24 Arachis hypogaea HOM05D001475 ORTHO05D001525 4.4e-18 94.7 97 48.5
VMungo1127G0591 Vigna mungo HOM05D001475 ORTHO05D001525 5.7e-18 94.4 57 66.7
arahy.Tifrunner.gnm1.ann1.W9RZHZ Arachis hypogaea HOM05D001475 ORTHO05D001525 1.2e-15 86.7 93 47.3
Eucgr.B02530 Eucalyptus grandis HOM05D001475 ORTHO05D001525 1.7e-14 82.8 101 37.6
Potri.001G058900 Populus trichocarpa HOM05D001475 ORTHO05D001525 6.5e-14 80.9 104 37.5
Haze_23770 Corylus avellana HOM05D001475 ORTHO05D001525 8.5e-14 80.5 93 35.5
Cfa011286 Carpinus fangiana HOM05D001475 ORTHO05D001525 1.5e-13 79.7 93 33.3
PGR102G2781 Punica granatum HOM05D001475 ORTHO05D001525 4.2e-13 78.2 92 37.0
CiPaw.14G085700 Carya illinoinensis HOM05D001475 ORTHO05D001525 5.5e-13 77.8 110 33.6
TWI79G1678 Tripterygium wilfordii HOM05D001475 ORTHO05D001525 7.2e-13 77.4 107 38.3
Nn2g13747 Nelumbo nucifera HOM05D001475 ORTHO05D001525 3.6e-12 75.1 94 36.2
PSO017G4783 Papaver somniferum HOM05D001475 ORTHO05D001525 3.6e-12 75.1 94 38.3
PSO478G3411 Papaver somniferum HOM05D001475 ORTHO05D001525 3.6e-12 75.1 94 38.3
Manes.04G017000 Manihot esculenta HOM05D001475 ORTHO05D001525 4.7e-12 74.7 92 37.0
AUR62040459 Chenopodium quinoa HOM05D001475 ORTHO05D001525 8.0e-12 73.9 92 38.0
TWI75G1638 Tripterygium wilfordii HOM05D001475 ORTHO05D001525 8.0e-12 73.9 92 38.0
QL01p020943 Quercus lobata HOM05D001475 ORTHO05D001525 1.4e-11 73.2 95 34.7
Potri.003G169000 Populus trichocarpa HOM05D001475 ORTHO05D001525 1.8e-11 72.8 108 38.9
Rhsim01G0214700 Rhododendron simsii HOM05D001475 ORTHO05D001525 1.8e-11 72.8 105 35.2
Actinidia40016 Actinidia chinensis HOM05D001475 ORTHO05D001525 2.3e-11 72.4 74 40.5
Rhsim04G0144900 Rhododendron simsii HOM05D001475 ORTHO05D001525 2.3e-11 72.4 90 37.8
Nitab4.5_0004479g0060 Nicotiana tabacum HOM05D001475 ORTHO05D001525 5.2e-11 71.2 103 30.1
CSS0049285 Camellia sinensis var. sinensis HOM05D001475 ORTHO05D001525 8.8e-11 70.5 69 43.5
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 8.8e-11 70.5 89 37.1
Nn2g11541 Nelumbo nucifera HOM05D001475 ORTHO05D001525 1.5e-10 69.7 91 36.3
DCAR_009303 Daucus carota HOM05D001475 ORTHO05D001525 2.6e-10 68.9 94 44.7
Sabra03G0123900 Salix brachista HOM05D001475 ORTHO05D001525 3.4e-10 68.6 90 38.9
Sc20g0005260 Simmondsia chinensis HOM05D001475 ORTHO05D001525 3.4e-10 68.6 57 49.1
Oeu049262.1 Olea europaea HOM05D001475 ORTHO05D001525 4.4e-10 68.2 105 33.3
GSVIVG01025230001 Vitis vinifera HOM05D001475 ORTHO05D001525 5.7e-10 67.8 90 36.7
Cpa.g.sc65.14 Carica papaya HOM05D001475 ORTHO05D001525 7.5e-10 67.4 104 32.7
Sed0012514 Sechium edule HOM05D001475 ORTHO05D001525 7.5e-10 67.4 58 48.3
vmacro14415 Vaccinium macrocarpon HOM05D001475 ORTHO05D001525 9.8e-10 67.0 105 33.3
TAR633G2109 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.7e-09 66.2 89 33.7
vmacro23401 Vaccinium macrocarpon HOM05D001475 ORTHO05D001525 2.2e-09 65.9 94 38.3
TAR369G0118 Trochodendron aralioides HOM05D001475 ORTHO05D001525 3.7e-09 65.1 92 31.5
CiPaw.09G173900 Carya illinoinensis HOM05D001475 ORTHO05D001525 4.9e-09 64.7 90 38.9
CsaV3_1G013750 Cucumis sativus L. HOM05D001475 ORTHO05D001525 4.9e-09 64.7 65 49.2
Ah.08g211770 Amaranthus hybridus HOM05D001475 ORTHO05D001525 6.3e-09 64.3 52 50.0
CANSAT54G0054 Cannabis sativa HOM05D001475 ORTHO05D001525 6.3e-09 64.3 58 43.1
Prupe.6G106500 Prunus persica HOM05D001475 ORTHO05D001525 6.3e-09 64.3 61 44.3
MBI18_g39095_MAGBIO Magnolia biondii HOM05D001475 ORTHO05D001525 8.3e-09 63.9 92 33.7
Atru.chr3.3587 Acer truncatum HOM05D001475 ORTHO05D001525 1.1e-08 63.5 97 33.0
ClCG03G002840 Citrullus lanatus HOM05D001475 ORTHO05D001525 1.4e-08 63.2 68 39.7
DCAR_006076 Daucus carota HOM05D001475 ORTHO05D001525 1.4e-08 63.2 98 31.6
Dinv37302 Davidia involucrata HOM05D001475 ORTHO05D001525 1.8e-08 62.8 57 43.9
PSO063G4226 Papaver somniferum HOM05D001475 ORTHO05D001525 1.8e-08 62.8 57 43.9
Sp4g19290 Schrenkiella parvula HOM05D001475 ORTHO05D001525 1.8e-08 62.8 88 37.5
Actinidia03713 Actinidia chinensis HOM05D001475 ORTHO05D001525 2.4e-08 62.4 105 31.4
GSVIVG01025712001 Vitis vinifera HOM05D001475 ORTHO05D001525 2.4e-08 62.4 57 43.9
MSTRG.19167 Avicennia marina HOM05D001475 ORTHO05D001525 3.1e-08 62.0 102 33.3
Thhalv10016168m.g Eutrema salsugineum HOM05D001475 ORTHO05D001525 3.1e-08 62.0 88 38.6
Solyc11g069820.3 Solanum lycopersicum HOM05D001475 ORTHO05D001525 3.1e-08 62.0 93 33.3
THA.LOC104823481 Tarenaya hassleriana HOM05D001475 ORTHO05D001525 3.1e-08 62.0 101 40.6
Zm00001eb259100 Zea mays HOM05D001475 ORTHO05D001525 3.1e-08 62.0 69 44.9
Aa31LG1G12700 Aethionema arabicum HOM05D001475 ORTHO05D001525 4.1e-08 61.6 105 34.3
BcaB02g09310 Brassica carinata HOM05D001475 ORTHO05D001525 4.1e-08 61.6 88 38.6
BcaC02g11826 Brassica carinata HOM05D001475 ORTHO05D001525 4.1e-08 61.6 88 38.6
A05p08820 Brassica napus HOM05D001475 ORTHO05D001525 4.1e-08 61.6 88 38.6
C04p10940 Brassica napus HOM05D001475 ORTHO05D001525 4.1e-08 61.6 88 38.6
BolC4t22687H Brassica oleracea HOM05D001475 ORTHO05D001525 4.1e-08 61.6 88 38.6
BraA05t19849Z Brassica rapa HOM05D001475 ORTHO05D001525 4.1e-08 61.6 88 38.6
MELO3C004931.2 Cucumis melo HOM05D001475 ORTHO05D001525 4.1e-08 61.6 57 47.4
MD03G1123900 Malus domestica HOM05D001475 ORTHO05D001525 4.1e-08 61.6 69 40.6
PSO339G1722 Papaver somniferum HOM05D001475 ORTHO05D001525 4.1e-08 61.6 55 45.5
Thecc.09G346100 Theobroma cacao HOM05D001475 ORTHO05D001525 4.1e-08 61.6 47 55.3
Dinv32701 Davidia involucrata HOM05D001475 ORTHO05D001525 5.4e-08 61.2 92 31.5
Duzib150G0102 Durio zibethinus HOM05D001475 ORTHO05D001525 5.4e-08 61.2 47 53.2
MD11G1140900 Malus domestica HOM05D001475 ORTHO05D001525 5.4e-08 61.2 67 37.3
PSO063G1667 Papaver somniferum HOM05D001475 ORTHO05D001525 5.4e-08 61.2 57 45.6
ATR0680G074 Amborella trichopoda HOM05D001475 ORTHO05D001525 9.2e-08 60.5 87 40.2
CDE05G1363 Ceratophyllum demersum HOM05D001561 ORTHO05D012158 1.2e-07 60.1 67 40.3
PGR142G1139 Punica granatum HOM05D001475 ORTHO05D001525 1.2e-07 60.1 98 32.7
Cpa.g.sc5.257 Carica papaya HOM05D001475 ORTHO05D001525 1.6e-07 59.7 103 35.0
DCAR_006430 Daucus carota HOM05D001475 ORTHO05D001525 1.6e-07 59.7 101 35.6
Phvul.007G096900 Phaseolus vulgaris HOM05D001475 ORTHO05D001525 1.6e-07 59.7 88 30.7
RcHm_v2.0_Chr5g0058181 Rosa chinensis HOM05D001475 ORTHO05D001525 1.6e-07 59.7 47 46.8
COL.COLO4_18290 Corchorus olitorius HOM05D001475 ORTHO05D012622 2.0e-07 59.3 47 51.1
Duzib168G1763 Durio zibethinus HOM05D001475 ORTHO05D001525 2.0e-07 59.3 51 45.1
FAN21G3966 Fragaria x ananassa HOM05D001475 ORTHO05D001525 2.0e-07 59.3 59 39.0
Os11g0416900 Oryza sativa ssp. japonica HOM05D001475 ORTHO05D001525 2.7e-07 58.9 68 42.6
THA.LOC104810868 Tarenaya hassleriana HOM05D001475 ORTHO05D001525 2.7e-07 58.9 88 35.2
CARHR131490 Cardamine hirsuta HOM05D001475 ORTHO05D001525 3.5e-07 58.5 88 35.2
Haze_20570 Corylus avellana HOM05D001475 ORTHO05D001525 3.5e-07 58.5 57 42.1
Glyma.20G181400 Glycine max HOM05D001475 ORTHO05D001525 3.5e-07 58.5 102 32.4
Sc06g0010370 Simmondsia chinensis HOM05D001475 ORTHO05D001525 4.5e-07 58.2 104 34.6
Cc06_g04080 Coffea canephora HOM05D001475 ORTHO05D001525 7.7e-07 57.4 69 43.5
Lj2C115T13 Lonicera japonica HOM05D001475 ORTHO05D001525 7.7e-07 57.4 103 31.1
SHI08929 Sapria himalayana HOM05D001475 ORTHO05D001525 7.7e-07 57.4 89 32.6
Thecc.05G063600 Theobroma cacao HOM05D001475 ORTHO05D001525 7.7e-07 57.4 57 42.1
AL4G33260 Arabidopsis lyrata HOM05D001475 ORTHO05D001525 1.0e-06 57.0 88 34.1
Cc01_g10780 Coffea canephora HOM05D001475 ORTHO05D001525 1.0e-06 57.0 60 41.7
Glyma.10G209200 Glycine max HOM05D001475 ORTHO05D001525 1.0e-06 57.0 92 33.7
SalBow3G0202 Salvia bowleyana HOM05D001475 ORTHO05D001525 1.0e-06 57.0 90 31.1
Sopen11g028460 Solanum pennellii HOM05D001475 ORTHO05D001525 1.0e-06 57.0 65 36.9
unitig_899.g14926 Utricularia gibba HOM05D001475 ORTHO05D001525 1.0e-06 57.0 55 41.8
Medtr1g094660 Medicago truncatula HOM05D001475 ORTHO05D001525 1.3e-06 56.6 93 28.0
Oeu016977.2 Olea europaea HOM05D001475 ORTHO05D001525 1.3e-06 56.6 57 45.6
Carub.0001s4259 Capsella rubella HOM05D001475 ORTHO05D001525 1.7e-06 56.2 116 32.8
Aa31LG10G1770 Aethionema arabicum HOM05D001475 ORTHO05D001525 2.3e-06 55.8 54 44.4
arahy.Tifrunner.gnm1.ann1.B29LWX Arachis hypogaea HOM05D001475 ORTHO05D001525 2.9e-06 55.5 79 32.9
arahy.Tifrunner.gnm1.ann1.Z5DA2B Arachis hypogaea HOM05D001475 ORTHO05D001525 2.9e-06 55.5 79 32.9
Prupe.2G210600 Prunus persica HOM05D001475 ORTHO05D001525 2.9e-06 55.5 78 32.1
VMungo0720G0101 Vigna mungo HOM05D001475 ORTHO05D001525 2.9e-06 55.5 88 29.5
Carub.0008s2142 Capsella rubella HOM05D001475 ORTHO05D001525 3.8e-06 55.1 105 31.4
Peaxi162Scf00123g01127 Petunia axillaris HOM05D001475 ORTHO05D001525 3.8e-06 55.1 57 45.6
TWI53G1730 Tripterygium wilfordii HOM05D001475 ORTHO05D001525 3.8e-06 55.1 56 42.9
Aa31LG5G22250 Aethionema arabicum HOM05D001475 ORTHO05D001525 5.0e-06 54.7 87 34.5
AT2G37010 Arabidopsis thaliana HOM05D001475 ORTHO05D001525 5.0e-06 54.7 54 42.6
BcaC08g43525 Brassica carinata HOM05D001475 ORTHO05D001525 5.0e-06 54.7 107 29.0
BolC6t35990H Brassica oleracea HOM05D001475 ORTHO05D001525 5.0e-06 54.7 107 29.0
Nitab4.5_0004126g0020 Nicotiana tabacum HOM05D001475 ORTHO05D001525 5.0e-06 54.7 98 25.5
SalBow3G3636 Salvia bowleyana HOM05D001475 ORTHO05D012622 5.0e-06 54.7 54 38.9
AL8G37330 Arabidopsis lyrata HOM05D001475 ORTHO05D001525 6.6e-06 54.3 105 28.6
Migut.J00524 Erythranthe guttata HOM05D001475 ORTHO05D001525 6.6e-06 54.3 57 43.9
FAN05G1033 Fragaria x ananassa HOM05D001475 ORTHO05D001525 6.6e-06 54.3 93 33.3
Lj1g0021950 Lotus japonicus HOM05D001475 ORTHO05D001525 6.6e-06 54.3 104 33.7
Psat3g043280 Pisum sativum HOM05D001475 ORTHO05D001525 6.6e-06 54.3 98 35.7
HPP92_002775 Vanilla planifolia HOM05D001475 ORTHO05D012622 6.6e-06 54.3 91 34.1
VMungo0720G1261 Vigna mungo HOM05D001475 ORTHO05D001525 6.6e-06 54.3 56 39.3
GSVIVG01016240001 Vitis vinifera HOM05D001475 ORTHO05D001525 6.6e-06 54.3 91 28.6
BcaB07g33334 Brassica carinata HOM05D001475 ORTHO05D001525 8.6e-06 53.9 106 28.3
A06p01050 Brassica napus HOM05D001475 ORTHO05D001525 8.6e-06 53.9 57 40.4
C06p09150 Brassica napus HOM05D001475 ORTHO05D001525 8.6e-06 53.9 57 40.4
BraA06t23333Z Brassica rapa HOM05D001475 ORTHO05D001525 8.6e-06 53.9 57 40.4
Carub.0004s1887 Capsella rubella HOM05D001475 ORTHO05D001525 8.6e-06 53.9 54 42.6
CARHR274420 Cardamine hirsuta HOM05D001475 ORTHO05D001525 8.6e-06 53.9 105 29.5
Hma1.2p1_0297F.1_g117070 Hydrangea macrophylla HOM05D001475 ORTHO05D001525 8.6e-06 53.9 58 37.9
QL07p043982 Quercus lobata HOM05D001475 ORTHO05D001525 8.6e-06 53.9 95 28.4
Solyc09g008000.3 Solanum lycopersicum HOM05D001475 ORTHO05D001525 8.6e-06 53.9 57 45.6
Sopen09g002800 Solanum pennellii HOM05D001475 ORTHO05D001525 8.6e-06 53.9 57 45.6
HPP92_028241 Vanilla planifolia HOM05D005615 ORTHO05D001525 8.6e-06 53.9 91 34.1


User provided reference genes

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