Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 4.1e-87 324.7 164 100.0
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.5e-36 156.8 117 70.9
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.5e-36 156.8 112 73.2
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.4e-34 150.2 117 66.7
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 6.8e-34 147.9 117 66.7
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.7e-32 143.3 115 66.1
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 5.4e-31 138.3 117 61.5
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.7e-30 136.0 120 58.3
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 6.0e-30 134.8 117 59.8
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.6e-27 126.7 120 55.8
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.8e-26 123.2 113 56.6
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 4.0e-26 122.1 115 54.8
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.2e-25 120.6 113 54.0
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 4.4e-25 118.6 106 58.5
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 5.8e-25 118.2 115 53.0
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 5.8e-25 118.2 106 57.5
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 6.4e-24 114.8 113 52.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 8.3e-24 114.4 113 51.3
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.1e-23 114.0 113 53.1
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 1.9e-23 113.2 115 51.3
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 7.1e-23 111.3 107 53.3
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.6e-22 110.2 148 44.6
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 2.1e-22 109.8 148 43.2
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 3.5e-22 109.0 113 50.4
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 4.6e-22 108.6 116 49.1
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 7.8e-22 107.8 108 51.9
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 7.8e-22 107.8 108 51.9
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.7e-21 106.7 113 49.6
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 2.3e-21 106.3 108 50.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.3e-21 106.3 115 48.7
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 3.9e-21 105.5 113 50.4
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 5.1e-21 105.1 114 50.0
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 6.6e-21 104.8 113 47.8
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.5e-20 103.6 117 48.7
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.9e-20 103.2 106 49.1
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 3.3e-20 102.4 113 52.2
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 5.6e-20 101.7 112 49.1
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 5.6e-20 101.7 104 51.0
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 9.5e-20 100.9 110 52.7
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.2e-19 100.5 114 48.2
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.2e-19 100.5 114 45.6
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.1e-19 99.8 111 44.1
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.1e-19 99.8 111 44.1
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 2.1e-19 99.8 115 46.1
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.8e-19 99.4 115 51.3
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 2.8e-19 99.4 107 50.5
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 2.8e-19 99.4 113 46.0
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.6e-19 99.0 113 46.0
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.7e-19 98.6 111 44.1
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.1e-19 97.8 112 45.5
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 8.1e-19 97.8 113 46.0
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-18 97.4 124 46.0
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-18 97.4 117 48.7
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.4e-18 97.1 116 50.0
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-18 97.1 114 47.4
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-18 96.3 111 43.2
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-18 96.3 111 43.2
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 3.1e-18 95.9 111 43.2
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 3.1e-18 95.9 113 44.2
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 3.1e-18 95.9 115 51.3
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 4.0e-18 95.5 125 46.4
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 8.9e-18 94.4 111 42.3
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.9e-18 94.4 115 50.4
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 8.9e-18 94.4 101 50.5
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-17 94.0 115 50.4
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.2e-17 94.0 115 50.4
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.2e-17 94.0 116 49.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.5e-17 93.6 115 50.4
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.6e-17 92.8 130 44.6
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 3.4e-17 92.4 116 49.1
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.4e-17 92.4 111 44.1
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.4e-17 92.0 113 42.5
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 5.8e-17 91.7 111 42.3
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.3e-16 90.5 104 49.0
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.7e-16 90.1 117 46.2
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 6.4e-16 88.2 121 44.6
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 8.4e-16 87.8 111 47.7
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 8.4e-16 87.8 100 48.0
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.4e-15 87.0 110 44.5
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.9e-15 86.7 107 47.7
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.4e-15 86.3 110 45.5
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 3.2e-15 85.9 117 41.9
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 3.2e-15 85.9 117 41.9
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.2e-15 85.9 103 45.6
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.2e-15 85.9 114 41.2
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.2e-15 85.5 107 42.1
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.2e-15 85.5 110 46.4
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 5.4e-15 85.1 109 42.2
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 5.4e-15 85.1 109 42.2
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 5.4e-15 85.1 110 45.5
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 5.4e-15 85.1 110 44.5
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 9.2e-15 84.3 109 44.0
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 6.0e-14 81.6 103 45.6
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 7.8e-14 81.3 112 39.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.0e-13 80.9 107 48.6
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.0e-13 80.9 107 40.2
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.3e-13 80.5 107 45.8
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.7e-13 80.1 110 41.8
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.9e-13 79.0 106 41.5
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 3.9e-13 79.0 107 41.1
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 3.9e-13 79.0 104 44.2
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 6.6e-13 78.2 116 42.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.7e-13 77.8 100 41.0
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.1e-12 77.4 112 38.4
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.5e-12 77.0 103 43.7
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.9e-12 76.6 136 39.0
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 5.6e-12 75.1 112 36.6
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 5.6e-12 75.1 103 44.7
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 7.3e-12 74.7 107 39.3
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 7.3e-12 74.7 107 40.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.2e-11 73.9 104 41.3
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.2e-11 73.9 107 39.3
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.6e-11 73.6 100 49.0
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 2.8e-11 72.8 101 41.6
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 6.2e-11 71.6 103 37.9
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.1e-10 70.9 95 41.1
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.1e-10 70.9 95 41.1
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.4e-10 70.5 158 37.3
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.8e-10 70.1 109 39.4
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 2.4e-10 69.7 103 42.7
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 2.4e-10 69.7 95 38.9
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.2e-09 67.4 104 41.3
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.0e-09 66.6 100 39.0
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 2.6e-09 66.2 104 38.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 5.8e-09 65.1 122 28.7
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 5.8e-09 65.1 100 38.0
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 8.4e-08 61.2 43 65.1


User provided reference genes

Program Settings