Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24950 Trifolium pratense HOM05D000056 ORTHO05D000019 1.4e-93 346.3 173 100.0
TPR.G24980 Trifolium pratense HOM05D000056 ORTHO05D000019 3.5e-49 198.7 168 64.9
Glyma.03G114800 Glycine max HOM05D000056 ORTHO05D000019 9.0e-45 184.1 162 64.2
Medtr8g005265 Medicago truncatula HOM05D000056 ORTHO05D000019 2.6e-44 182.6 171 61.4
VMungo0331G0544 Vigna mungo HOM05D000056 ORTHO05D000019 4.5e-44 181.8 165 61.8
Glyma.07G111900 Glycine max HOM05D000056 ORTHO05D000019 5.0e-43 178.3 165 60.0
Phvul.010G052500 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 6.5e-43 177.9 165 60.6
Psat4g225680 Pisum sativum HOM05D000056 ORTHO05D000019 1.1e-42 177.2 162 60.5
Lj3g0026964 Lotus japonicus HOM05D000056 ORTHO05D000019 9.4e-42 174.1 166 59.0
Lj1g0004737 Lotus japonicus HOM05D000056 ORTHO05D000019 2.2e-30 136.3 128 60.2
Glyma.03G114700 Glycine max HOM05D000056 ORTHO05D000019 3.1e-29 132.5 158 51.9
Phvul.010G052400 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 5.9e-28 128.3 157 50.3
TPR.G24933 Trifolium pratense HOM05D000056 ORTHO05D000019 2.2e-27 126.3 169 45.0
VMungo0331G0153 Vigna mungo HOM05D000056 ORTHO05D000019 8.5e-27 124.4 157 47.1
TPR.G33138 Trifolium pratense HOM05D000056 ORTHO05D000019 1.1e-26 124.0 161 47.2
Medtr8g005225 Medicago truncatula HOM05D000056 ORTHO05D000019 2.1e-25 119.8 168 46.4
Lj3g0009026 Lotus japonicus HOM05D000056 ORTHO05D000019 2.0e-23 113.2 156 46.2
Medtr4g112660 Medicago truncatula HOM05D000056 ORTHO05D000019 4.4e-23 112.1 170 45.9
Lj2g0000442 Lotus japonicus HOM05D000056 ORTHO05D000019 2.8e-22 109.4 151 48.3
Glyma.07G111000 Glycine max HOM05D000056 ORTHO05D000019 2.0e-20 103.2 163 42.3
Glyma.03G115200 Glycine max HOM05D000056 ORTHO05D000019 2.6e-20 102.8 161 41.6
Phvul.010G053000 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 5.9e-20 101.7 162 41.4
VMungo0331G0308 Vigna mungo HOM05D000056 ORTHO05D000019 3.2e-18 95.9 170 39.4
Medtr8g006525 Medicago truncatula HOM05D000056 ORTHO05D000019 5.5e-18 95.1 155 40.0
Lj3g0006338 Lotus japonicus HOM05D000056 ORTHO05D000019 1.4e-16 90.5 157 38.2
Medtr8g005325 Medicago truncatula HOM05D000056 ORTHO05D000019 1.8e-16 90.1 157 39.5
Medtr8g005235 Medicago truncatula HOM05D000056 ORTHO05D000019 3.0e-16 89.4 155 38.7
TPR.G24953 Trifolium pratense HOM05D000056 ORTHO05D000019 3.0e-16 89.4 156 42.3
Glyma.07G111100 Glycine max HOM05D000056 ORTHO05D000019 5.2e-16 88.6 161 36.6
Psat4g225920 Pisum sativum HOM05D000056 ORTHO05D000019 6.8e-16 88.2 154 39.6
arahy.Tifrunner.gnm1.ann1.5M1T04 Arachis hypogaea HOM05D000056 ORTHO05D000019 7.5e-15 84.7 161 38.5
Medtr0209s0030 Medicago truncatula HOM05D000056 ORTHO05D000019 7.5e-15 84.7 155 38.7
Medtr0209s0060 Medicago truncatula HOM05D000056 ORTHO05D000019 7.5e-15 84.7 155 38.7
arahy.Tifrunner.gnm1.ann1.S1SV0F Arachis hypogaea HOM05D000056 ORTHO05D000019 1.7e-14 83.6 161 37.9
TPR.G24956 Trifolium pratense HOM05D000056 ORTHO05D000019 1.7e-14 83.6 191 35.1
Medtr8g005285 Medicago truncatula HOM05D000056 ORTHO05D000019 3.1e-13 79.3 176 35.8
QL04p032442 Quercus lobata HOM05D000056 ORTHO05D000019 9.1e-13 77.8 110 40.0
arahy.Tifrunner.gnm1.ann1.2NX3K9 Arachis hypogaea HOM05D000056 ORTHO05D000019 1.6e-12 77.0 80 52.5
Medtr8g005295 Medicago truncatula HOM05D000056 ORTHO05D000019 2.7e-12 76.3 190 35.3
TPR.G24973 Trifolium pratense HOM05D000056 ORTHO05D000019 4.5e-12 75.5 177 33.9
arahy.Tifrunner.gnm1.ann1.UHG5LS Arachis hypogaea HOM05D000056 ORTHO05D000019 5.9e-12 75.1 180 33.9
Phvul.010G052900 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 7.7e-12 74.7 162 34.0
QL04p031889 Quercus lobata HOM05D000056 ORTHO05D000019 1.0e-11 74.3 151 32.5
Psat4g225880 Pisum sativum HOM05D000056 ORTHO05D000019 1.3e-11 73.9 184 33.2
QL04p032612 Quercus lobata HOM05D000056 ORTHO05D000019 1.3e-11 73.9 151 32.5
QL04p032818 Quercus lobata HOM05D000056 ORTHO05D000019 1.7e-11 73.6 164 34.1
arahy.Tifrunner.gnm1.ann1.MK4BTH Arachis hypogaea HOM05D000056 ORTHO05D000019 2.2e-11 73.2 80 50.0
arahy.Tifrunner.gnm1.ann1.CDCU9R Arachis hypogaea HOM05D000056 ORTHO05D000019 2.9e-11 72.8 141 36.2
VMungo0331G1926 Vigna mungo HOM05D000056 ORTHO05D000019 5.0e-11 72.0 182 31.9
Phvul.010G052700 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 6.5e-11 71.6 134 38.8
arahy.Tifrunner.gnm1.ann1.2597Q1 Arachis hypogaea HOM05D000056 ORTHO05D000019 8.5e-11 71.2 164 34.8
QL04p032199 Quercus lobata HOM05D000056 ORTHO05D000019 8.5e-11 71.2 124 37.1
QL04p032243 Quercus lobata HOM05D000056 ORTHO05D000019 8.5e-11 71.2 124 37.1
arahy.Tifrunner.gnm1.ann1.M8Q3ZJ Arachis hypogaea HOM05D000056 ORTHO05D000019 1.5e-10 70.5 164 34.8
QL04p031816 Quercus lobata HOM05D000056 ORTHO05D000019 1.5e-10 70.5 109 36.7
QL04p032567 Quercus lobata HOM05D000056 ORTHO05D000019 1.5e-10 70.5 109 36.7
QL04p032883 Quercus lobata HOM05D000056 ORTHO05D000019 4.2e-10 68.9 142 35.9
QL04p032953 Quercus lobata HOM05D000056 ORTHO05D000019 4.2e-10 68.9 152 35.5
VMungo0331G1987 Vigna mungo HOM05D000056 ORTHO05D000019 7.2e-10 68.2 120 37.5
CiPaw.14G022400 Carya illinoinensis HOM05D000056 ORTHO05D000019 9.4e-10 67.8 157 31.8
arahy.Tifrunner.gnm1.ann1.E96RN1 Arachis hypogaea HOM05D000056 ORTHO05D000019 1.2e-09 67.4 145 36.6
Haze_02793 Corylus avellana HOM05D000056 ORTHO05D000019 1.6e-09 67.0 121 31.4
QL04p032395 Quercus lobata HOM05D000056 ORTHO05D000019 2.1e-09 66.6 108 38.0
QL04p032535 Quercus lobata HOM05D000056 ORTHO05D000019 2.7e-09 66.2 123 38.2
RcHm_v2.0_Chr4g0388531 Rosa chinensis HOM05D000056 ORTHO05D000019 3.6e-09 65.9 124 31.5
Potri.005G007500 Populus trichocarpa HOM05D000056 ORTHO05D000019 4.7e-09 65.5 165 33.9
Haze_01787 Corylus avellana HOM05D000056 ORTHO05D000019 6.1e-09 65.1 124 37.1
Glyma.03G115132 Glycine max HOM05D000056 ORTHO05D000019 6.1e-09 65.1 192 29.7
Glyma.07G111300 Glycine max HOM05D000056 ORTHO05D000019 6.1e-09 65.1 161 31.1
Haze_01691 Corylus avellana HOM05D000056 ORTHO05D000019 8.0e-09 64.7 171 31.6
Glyma.07G111500 Glycine max HOM05D000056 ORTHO05D000019 8.0e-09 64.7 146 32.9
QL04p031788 Quercus lobata HOM05D000056 ORTHO05D000019 8.0e-09 64.7 146 33.6
CiPaw.13G028400 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.0e-08 64.3 159 30.2
Phvul.004G075800 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 1.4e-08 63.9 132 34.1
Potri.005G008500 Populus trichocarpa HOM05D000056 ORTHO05D000019 1.4e-08 63.9 163 31.3
QL04p033008 Quercus lobata HOM05D000056 ORTHO05D000019 1.4e-08 63.9 125 33.6
Lalb_Chr07g0195591 Lupinus albus HOM05D000056 ORTHO05D000019 1.8e-08 63.5 174 31.6
Potri.014G053700 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.3e-08 63.2 167 32.3
TAR731G0002 Trochodendron aralioides HOM05D000056 ORTHO05D000019 4.0e-08 62.4 124 34.7
CANSAT78G0493 Cannabis sativa HOM05D000056 ORTHO05D000019 5.2e-08 62.0 129 34.1
Lj3g0020828 Lotus japonicus HOM05D000056 ORTHO05D000019 5.2e-08 62.0 173 32.4
arahy.Tifrunner.gnm1.ann1.WLPG7T Arachis hypogaea HOM05D000056 ORTHO05D000019 6.8e-08 61.6 116 37.9
CiPaw.15G064300 Carya illinoinensis HOM05D000056 ORTHO05D000019 6.8e-08 61.6 152 31.6
Gohir.D13G164300 Gossypium hirsutum HOM05D000056 ORTHO05D000019 6.8e-08 61.6 116 37.9
Gorai.013G198400 Gossypium raimondii HOM05D000056 ORTHO05D000019 6.8e-08 61.6 116 37.9
Glyma.03G114900 Glycine max HOM05D000056 ORTHO05D000019 8.8e-08 61.2 149 30.9
Glyma.07G111400 Glycine max HOM05D000056 ORTHO05D000019 8.8e-08 61.2 152 33.6
Gohir.D13G164400 Gossypium hirsutum HOM05D000056 ORTHO05D000019 8.8e-08 61.2 116 38.8
Psat0s1748g0160 Pisum sativum HOM05D000056 ORTHO05D000019 1.2e-07 60.8 133 33.1
Thecc.01G390100 Theobroma cacao HOM05D000056 ORTHO05D000019 1.2e-07 60.8 143 33.6
CiPaw.14G023300 Carya illinoinensis HOM05D000056 ORTHO05D000019 1.5e-07 60.5 163 30.1
Gohir.A13G159400 Gossypium hirsutum HOM05D000056 ORTHO05D000019 1.5e-07 60.5 116 35.3
Nn8g41201 Nelumbo nucifera HOM05D000056 ORTHO05D000019 1.5e-07 60.5 161 29.8
QL04p033031 Quercus lobata HOM05D000056 ORTHO05D000019 1.5e-07 60.5 164 29.3
Ciclev10013891m.g Citrus clementina HOM05D000056 ORTHO05D000019 2.6e-07 59.7 150 31.3
Medtr6g010890 Medicago truncatula HOM05D000056 ORTHO05D000019 2.6e-07 59.7 157 30.6
CiPaw.15G064400 Carya illinoinensis HOM05D000056 ORTHO05D000019 3.4e-07 59.3 154 30.5
Gorai.013G198300 Gossypium raimondii HOM05D000056 ORTHO05D000019 3.4e-07 59.3 116 37.9
Atru.chr2.2232 Acer truncatum HOM05D000056 ORTHO05D000019 4.4e-07 58.9 140 32.9
Haze_02791 Corylus avellana HOM05D000056 ORTHO05D000019 4.4e-07 58.9 88 37.5
Gohir.A13G159500 Gossypium hirsutum HOM05D000056 ORTHO05D000019 4.4e-07 58.9 116 37.1
QL04p032552 Quercus lobata HOM05D000056 ORTHO05D000019 4.4e-07 58.9 163 33.1
Cfa020881 Carpinus fangiana HOM05D000056 ORTHO05D000019 5.7e-07 58.5 122 35.2
MBI17_g35769_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 5.7e-07 58.5 157 31.2
QL04p031377 Quercus lobata HOM05D000056 ORTHO05D000019 5.7e-07 58.5 170 28.2
CiPaw.14G022600 Carya illinoinensis HOM05D000056 ORTHO05D000019 7.5e-07 58.2 163 30.7
Haze_01786 Corylus avellana HOM05D000056 ORTHO05D000019 7.5e-07 58.2 129 33.3
Haze_02778 Corylus avellana HOM05D000056 ORTHO05D000019 7.5e-07 58.2 113 33.6
Haze_02782 Corylus avellana HOM05D000056 ORTHO05D000019 7.5e-07 58.2 127 31.5
Gorai.013G197900 Gossypium raimondii HOM05D000056 ORTHO05D000019 7.5e-07 58.2 128 35.2
QL04p032904 Quercus lobata HOM05D000056 ORTHO05D000019 7.5e-07 58.2 144 31.2
Thecc.01G390700 Theobroma cacao HOM05D000056 ORTHO05D000019 7.5e-07 58.2 163 30.1
Atru.chr2.2240 Acer truncatum HOM05D000056 ORTHO05D000019 9.8e-07 57.8 146 30.8
FAN06G1804 Fragaria x ananassa HOM05D000056 ORTHO05D000019 9.8e-07 57.8 127 32.3
FAN06G3622 Fragaria x ananassa HOM05D000056 ORTHO05D000019 9.8e-07 57.8 127 32.3
QL04p032778 Quercus lobata HOM05D000056 ORTHO05D000019 9.8e-07 57.8 152 30.9
FvH4_7g09691 Fragaria vesca HOM05D000056 ORTHO05D000019 1.3e-06 57.4 126 31.0
Medtr3g079390 Medicago truncatula HOM05D000056 ORTHO05D000019 1.3e-06 57.4 167 29.9
Nn8g41185 Nelumbo nucifera HOM05D000056 ORTHO05D000019 1.3e-06 57.4 157 29.9
PGR102G3017 Punica granatum HOM05D000056 ORTHO05D000019 1.3e-06 57.4 111 32.4
QL02p103452 Quercus lobata HOM05D000056 ORTHO05D000019 1.3e-06 57.4 145 32.4
QL04p032422 Quercus lobata HOM05D000056 ORTHO05D000019 1.3e-06 57.4 126 34.9
QL04p032797 Quercus lobata HOM05D000056 ORTHO05D000019 1.3e-06 57.4 126 33.3
QL04p032807 Quercus lobata HOM05D000056 ORTHO05D000019 1.3e-06 57.4 126 33.3
Phvul.011G145000 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 1.7e-06 57.0 135 33.3
Haze_02798 Corylus avellana HOM05D000056 ORTHO05D000019 2.2e-06 56.6 96 38.5
Lj3C388G5 Lonicera japonica HOM05D000056 ORTHO05D000019 2.2e-06 56.6 128 34.4
MBI18_g42641_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 2.2e-06 56.6 103 33.0
Potri.014G053900 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.2e-06 56.6 162 31.5
Prupe.1G477500 Prunus persica HOM05D000056 ORTHO05D000019 2.2e-06 56.6 91 30.8
QL04p031630 Quercus lobata HOM05D000056 ORTHO05D000019 2.2e-06 56.6 170 27.1
QL09p011398 Quercus lobata HOM05D000056 ORTHO05D000019 2.2e-06 56.6 163 24.5
Haze_24987 Corylus avellana HOM05D000056 ORTHO05D000019 2.8e-06 56.2 114 32.5
Dinv36809 Davidia involucrata HOM05D000056 ORTHO05D000019 2.8e-06 56.2 108 41.7
FvH4_2g29310 Fragaria vesca HOM05D000056 ORTHO05D000019 2.8e-06 56.2 144 29.9
FAN27G3224 Fragaria x ananassa HOM05D000056 ORTHO05D000019 2.8e-06 56.2 167 26.9
Gohir.D13G164700 Gossypium hirsutum HOM05D000056 ORTHO05D000019 2.8e-06 56.2 115 36.5
MBI01_g18397_MAGBIO Magnolia biondii HOM05D000056 ORTHO05D000019 2.8e-06 56.2 168 27.4
Potri.018G029800 Populus trichocarpa HOM05D000056 ORTHO05D000019 2.8e-06 56.2 171 24.6
Aqoxy2G01018 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 3.7e-06 55.8 170 31.2
PSO675G3149 Papaver somniferum HOM05D000056 ORTHO05D000019 3.7e-06 55.8 121 28.9
Potri.019G108400 Populus trichocarpa HOM05D000056 ORTHO05D000019 4.9e-06 55.5 109 33.0
CiPaw.14G022500 Carya illinoinensis HOM05D000056 ORTHO05D000019 6.3e-06 55.1 163 28.8
Ciclev10027656m.g Citrus clementina HOM05D000056 ORTHO05D000019 6.3e-06 55.1 125 32.0
Haze_02781 Corylus avellana HOM05D000056 ORTHO05D000019 6.3e-06 55.1 118 33.9
Atru.chr3.2570 Acer truncatum HOM05D000056 ORTHO05D000019 8.3e-06 54.7 103 31.1
Ca_16237_v3 Cicer arietinum L. HOM05D000056 ORTHO05D000019 8.3e-06 54.7 147 28.6
Ciclev10015337m.g Citrus clementina HOM05D000056 ORTHO05D000019 8.3e-06 54.7 125 32.0
Dinv08192 Davidia involucrata HOM05D000056 ORTHO05D000019 8.3e-06 54.7 166 27.1
Manes.12G125100 Manihot esculenta HOM05D000056 ORTHO05D000019 8.3e-06 54.7 112 30.4
PGR031G0752 Punica granatum HOM05D000056 ORTHO05D000019 8.3e-06 54.7 79 39.2
VMungo1309G0501 Vigna mungo HOM05D000056 ORTHO05D000019 8.3e-06 54.7 123 35.0


User provided reference genes

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