Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1821.2 994 100.0
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1533.1 994 84.9
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1520.8 941 85.3
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1452.6 997 79.5
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1383.2 944 75.2
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1381.7 943 75.7
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1381.7 943 76.2
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1378.2 943 74.9
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1372.5 943 75.2
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1359.0 944 75.6
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1353.6 946 73.5
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1343.9 945 74.3
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1342.8 945 73.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1330.9 1012 70.1
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1318.9 943 71.6
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1318.1 942 72.1
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1307.7 999 70.9
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1305.0 945 71.1
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1302.7 947 70.9
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1291.6 944 71.0
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1288.1 942 70.3
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1283.9 943 69.7
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1278.5 945 70.2
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1276.5 944 69.8
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1274.6 947 68.6
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1273.8 943 69.6
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1271.5 948 69.7
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1263.8 950 69.7
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1261.9 977 68.6
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1261.1 948 70.0
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1258.8 942 68.5
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1258.4 942 68.5
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1256.5 954 69.2
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1255.7 942 68.6
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1247.6 945 69.0
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1246.9 940 68.6
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1246.9 947 69.0
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1246.5 1008 65.9
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1246.5 954 67.4
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1245.0 955 67.3
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1243.0 942 68.4
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1243.0 942 68.2
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1239.6 943 68.1
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1238.8 942 68.3
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1238.8 963 66.9
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1236.5 944 68.1
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1231.1 942 68.4
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1230.3 949 66.9
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1229.5 943 67.3
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1224.5 952 68.3
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1220.3 944 67.5
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1218.0 991 64.9
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1216.8 945 66.1
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1216.4 947 66.1
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1215.3 944 66.0
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1215.3 947 66.9
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1214.5 947 67.1
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1214.1 889 70.0
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1213.7 948 65.7
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1213.4 948 65.7
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1211.1 945 65.9
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1209.1 944 65.4
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1208.7 944 65.4
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1208.4 941 67.1
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1207.6 945 65.4
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1206.0 945 65.6
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1205.7 948 66.2
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1205.3 945 65.4
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1201.0 849 73.1
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1200.7 945 65.9
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1200.7 944 65.4
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1198.0 949 66.3
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1197.2 949 66.1
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1196.4 954 65.1
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1195.3 941 64.9
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1191.4 944 66.1
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1189.9 994 63.0
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1186.0 944 65.4
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1183.7 940 65.0
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1179.9 935 65.1
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1178.3 946 64.6
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1177.5 950 64.8
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1174.8 980 64.0
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1174.8 947 65.7
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1172.9 947 64.6
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1157.9 952 64.2
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1156.0 978 62.2
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1154.4 968 62.7
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1153.7 951 63.3
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1152.1 982 62.5
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1151.3 954 63.2
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1144.8 823 72.1
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1131.3 943 62.4
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1127.9 947 62.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1126.7 961 63.3
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1122.1 948 62.3
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1122.1 922 62.4
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1119.4 948 61.8
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1109.7 794 72.0
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1109.0 949 62.6
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1088.9 954 60.2
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1087.4 1003 58.7
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 0.0e+00 1087.0 788 72.0
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.4e-304 1049.7 785 70.7
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 8.0e-303 1043.9 950 58.5
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 1.3e-297 1026.5 948 56.6
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 2.8e-279 965.7 942 54.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 3.4e-277 958.7 704 70.9
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 1.8e-275 953.0 949 52.2
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 3.3e-272 942.2 950 53.6
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 4.0e-270 935.3 954 51.4
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.2e-266 923.7 757 63.0
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 2.7e-258 896.0 935 51.2
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 2.1e-234 816.6 651 66.2
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.7e-234 816.2 665 64.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 5.8e-221 771.9 959 45.2
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 3.4e-197 693.0 975 45.2
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.2e-196 690.3 548 65.5
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 6.5e-196 688.7 564 60.5
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 3.0e-193 679.9 551 64.8
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.7e-191 674.1 690 50.7
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.0e-185 653.3 597 57.1
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 4.4e-176 622.9 552 59.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 2.7e-173 613.6 462 70.8
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.1e-166 589.7 470 63.8
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.2e-160 571.6 563 53.3
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 2.1e-146 524.2 611 47.3
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 2.3e-140 504.2 1015 33.6
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.2e-136 491.9 983 31.8
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.6e-133 481.5 573 50.1
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 3.0e-116 424.1 347 65.4
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 1.3e-114 418.7 962 31.2
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 6.7e-108 396.4 382 59.4
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.6e-106 391.7 340 55.6
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 8.4e-103 379.4 285 70.2
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 5.8e-96 356.7 300 60.0
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 2.2e-95 354.8 276 67.0
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 2.5e-94 351.3 564 41.7
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 8.7e-92 342.8 266 66.2
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.4e-88 330.9 556 39.4
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 5.0e-87 327.0 277 65.3
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 1.1e-86 325.9 405 42.5
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 5.5e-86 323.6 239 67.8
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 1.2e-85 322.4 244 67.2
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 1.1e-81 309.3 499 42.3
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.4e-76 292.4 221 67.9
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.0e-71 276.2 299 54.2
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 3.8e-71 274.2 189 74.6
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 8.0e-69 266.5 252 56.3
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 6.3e-66 256.9 245 54.7
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 9.4e-62 243.0 423 41.6
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 9.4e-62 243.0 242 58.3
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 2.7e-61 241.5 438 40.4
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 8.3e-58 229.9 425 39.1
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.4e-57 229.2 220 51.4
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.6e-56 225.7 600 31.3
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 4.4e-51 207.6 225 52.0
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 1.1e-49 203.0 187 55.6
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 3.1e-49 201.4 243 46.9
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 3.6e-45 188.0 151 66.2
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.4e-43 181.4 163 59.5
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 1.8e-41 175.6 134 65.7
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 8.6e-39 166.8 330 36.7
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 3.6e-37 161.4 409 35.2
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 8.9e-36 156.8 230 41.3
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.2e-34 152.1 92 76.1
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 6.4e-34 150.6 123 62.6
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.1e-33 149.8 159 50.9
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 2.7e-32 145.2 141 57.4
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 3.5e-32 144.8 120 58.3
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 1.2e-24 119.8 172 42.4
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.6e-23 114.0 102 53.9
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 1.9e-22 112.5 122 50.0
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 9.5e-22 110.2 80 68.8
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 4.7e-21 107.8 165 41.2
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.9e-20 103.6 74 63.5
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.9e-20 103.6 74 63.5
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 8.9e-20 103.6 179 38.0
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 8.4e-18 97.1 72 65.3
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 8.9e-12 77.0 104 42.3
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 3.2e-09 68.6 133 35.3
Phvul.003G243600 Phaseolus vulgaris HOM05D002898 ORTHO05D003424 1.5e-06 59.7 164 31.7


User provided reference genes

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