Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 0.0e+00 1178.7 603 100.0
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 4.2e-299 1030.8 560 93.0
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 2.4e-294 1015.0 560 92.0
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 1.8e-286 988.8 567 88.2
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 2.4e-270 935.3 560 84.6
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 7.8e-269 930.2 561 84.0
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 1.3e-268 929.5 560 83.9
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 3.9e-260 901.4 564 81.0
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 1.6e-258 896.0 566 80.0
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 1.2e-256 889.8 567 81.3
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 9.9e-256 886.7 562 79.9
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 2.2e-255 885.6 562 79.5
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 8.3e-255 883.6 561 80.4
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 7.4e-219 764.2 559 69.4
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 3.7e-218 761.9 561 69.7
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 9.7e-211 737.3 563 67.5
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 2.2e-210 736.1 559 67.3
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.8e-209 733.0 560 67.1
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 4.1e-209 731.9 555 68.1
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 9.0e-209 730.7 580 64.0
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 9.0e-209 730.7 568 66.2
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 9.0e-209 730.7 563 64.7
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 2.6e-208 729.2 666 59.3
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 7.7e-208 727.6 563 66.1
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 1.7e-207 726.5 559 67.6
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 6.5e-207 724.5 561 66.5
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 8.5e-207 724.2 560 66.8
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.4e-206 723.4 563 66.1
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 3.2e-206 722.2 563 66.3
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 9.4e-206 720.7 559 66.0
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 3.6e-205 718.8 561 66.1
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 4.6e-205 718.4 561 66.1
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 1.8e-204 716.5 559 65.3
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 2.5e-203 712.6 559 64.2
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 1.3e-202 710.3 561 65.4
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 2.2e-202 709.5 559 63.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 4.8e-202 708.4 559 64.9
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 1.8e-201 706.4 555 64.0
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 3.1e-201 705.7 559 65.1
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 3.1e-201 705.7 560 64.6
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 1.5e-200 703.4 568 62.3
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.5e-200 703.4 559 64.9
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 5.9e-200 701.4 559 62.8
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 8.5e-199 697.6 561 63.8
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.5e-198 696.0 559 63.3
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 3.2e-198 695.7 560 63.4
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 6.1e-197 691.4 559 61.9
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 1.4e-196 690.3 553 64.7
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 1.4e-196 690.3 561 63.3
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 1.8e-196 689.9 560 62.7
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 3.9e-196 688.7 568 62.9
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 5.1e-196 688.3 559 61.5
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 1.5e-195 686.8 548 65.1
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 1.5e-195 686.8 559 61.4
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 2.6e-195 686.0 559 62.4
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 3.3e-195 685.6 559 62.1
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 4.8e-194 681.8 559 62.3
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 6.3e-194 681.4 562 61.2
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 8.2e-194 681.0 559 61.4
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 8.2e-194 681.0 550 64.4
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 1.4e-193 680.2 560 60.5
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 1.4e-193 680.2 559 61.4
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 2.4e-193 679.5 559 61.7
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 3.1e-193 679.1 559 61.2
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 5.3e-193 678.3 559 61.5
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 7.0e-193 677.9 604 59.1
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 2.0e-192 676.4 559 61.4
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 5.9e-192 674.9 559 62.1
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 1.0e-191 674.1 591 58.5
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 2.2e-191 672.9 559 61.4
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 2.9e-191 672.5 559 61.2
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 2.9e-191 672.5 559 61.2
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 6.5e-191 671.4 559 60.8
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 1.1e-190 670.6 559 60.8
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 3.2e-190 669.1 560 60.7
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 1.6e-189 666.8 584 59.1
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 1.4e-188 663.7 559 61.0
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 2.3e-188 662.9 560 61.2
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 2.0e-187 659.8 559 62.1
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 4.4e-187 658.7 559 59.4
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 1.8e-185 653.3 560 60.7
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.7e-183 646.7 559 60.8
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 4.2e-182 642.1 562 60.5
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 5.5e-182 641.7 559 59.9
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 4.7e-181 638.6 559 60.3
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 4.7e-181 638.6 559 60.5
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 8.0e-181 637.9 560 57.3
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 1.8e-180 636.7 599 55.4
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 5.7e-179 631.7 562 56.9
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.3e-178 630.6 559 60.3
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 3.7e-178 629.0 518 62.0
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 2.7e-176 622.9 571 56.2
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.9e-174 616.7 767 46.3
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 5.5e-174 615.1 576 57.3
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 4.4e-147 525.8 560 51.4
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 8.3e-146 521.5 430 60.0
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.2e-139 501.1 365 70.4
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 9.6e-134 481.5 427 59.0
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 4.4e-123 446.0 389 56.3
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.9e-118 430.6 447 53.9
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 9.6e-118 428.3 336 64.0
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.3e-109 401.4 577 42.6
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.7e-109 399.8 422 48.6
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.4e-105 387.9 581 40.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 9.6e-102 375.2 561 41.4
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 3.3e-94 350.1 565 39.1
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 6.9e-92 342.4 565 38.4
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 9.0e-92 342.0 275 68.0
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 4.2e-89 333.2 383 48.6
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.2e-75 288.5 203 73.4
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.9e-58 230.7 172 70.3
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 1.0e-47 195.7 165 62.4
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.2e-46 192.2 584 28.4
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 4.1e-44 183.7 232 45.7
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.0e-43 181.4 139 71.2
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.9e-42 177.2 136 65.4
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 1.1e-41 175.6 133 68.4
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 5.2e-39 166.8 181 44.8
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.9e-36 158.3 124 64.5
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 2.7e-35 154.5 104 74.0
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 2.8e-32 144.4 86 87.2
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 8.1e-32 142.9 590 26.1
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 1.6e-27 128.6 76 88.2
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.3e-23 114.8 120 45.8
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 3.3e-17 94.4 94 52.1
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 2.8e-16 91.3 75 53.3
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.9e-12 78.6 70 55.7
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 5.6e-09 67.0 45 75.6
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 4.5e-06 57.4 73 41.1


User provided reference genes

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