Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24904 Trifolium pratense HOM05D006674 ORTHO05D007954 7.1e-258 893.6 531 100.0
Psat5g120320 Pisum sativum HOM05D006674 ORTHO05D007954 3.1e-213 745.3 524 86.6
Medtr3g065220 Medicago truncatula HOM05D006674 ORTHO05D007954 1.7e-206 723.0 522 83.9
Glyma.18G041200 Glycine max HOM05D006674 ORTHO05D007954 2.2e-190 669.5 529 78.3
Glyma.11G215400 Glycine max HOM05D006674 ORTHO05D007954 9.2e-189 664.1 527 78.7
Lj6g0000042 Lotus japonicus HOM05D006674 ORTHO05D007954 2.3e-184 649.4 525 76.2
Phvul.001G229300 Phaseolus vulgaris HOM05D006674 ORTHO05D007954 2.0e-172 609.8 484 77.5
Lalb_Chr15g0084971 Lupinus albus HOM05D006674 ORTHO05D007954 1.4e-168 597.0 530 71.7
VMungo1383G3322 Vigna mungo HOM05D006674 ORTHO05D007954 8.1e-161 571.2 565 58.2
arahy.Tifrunner.gnm1.ann1.M54V7M Arachis hypogaea HOM05D006674 ORTHO05D007954 2.3e-160 569.7 516 71.1
arahy.Tifrunner.gnm1.ann1.V27PH4 Arachis hypogaea HOM05D006674 ORTHO05D007954 3.5e-148 529.3 505 69.7
Ca_17090_v3 Cicer arietinum L. HOM05D006674 ORTHO05D007954 2.2e-126 456.8 292 83.2
TWI77G1007 Tripterygium wilfordii HOM05D006674 ORTHO05D007954 1.3e-121 441.0 523 58.5
Nn4g24371 Nelumbo nucifera HOM05D006674 ORTHO05D007954 1.5e-119 434.1 539 55.7
MD17G1268600 Malus domestica HOM05D006674 ORTHO05D007954 7.2e-117 425.2 547 54.8
Dinv28183 Davidia involucrata HOM05D006674 ORTHO05D007954 1.6e-116 424.1 533 57.0
Sc11g0004590 Simmondsia chinensis HOM05D006674 ORTHO05D007954 1.3e-113 414.5 532 56.4
Actinidia28801 Actinidia chinensis HOM05D006674 ORTHO05D007954 8.2e-113 411.8 526 54.0
RcHm_v2.0_Chr3g0491391 Rosa chinensis HOM05D006674 ORTHO05D007954 1.1e-112 411.4 482 57.5
Eucgr.F02873 Eucalyptus grandis HOM05D006674 ORTHO05D007954 5.3e-112 409.1 494 56.3
BcaB06g27104 Brassica carinata HOM05D006674 ORTHO05D007954 2.6e-111 406.8 527 54.6
BcaC02g09589 Brassica carinata HOM05D006674 ORTHO05D007954 3.8e-110 402.9 525 54.3
Sp7g04510 Schrenkiella parvula HOM05D006674 ORTHO05D007954 1.2e-108 397.9 525 53.7
FvH4_1g30190 Fragaria vesca HOM05D006674 ORTHO05D007954 2.1e-108 397.1 530 53.4
CiPaw.03G073400 Carya illinoinensis HOM05D006674 ORTHO05D007954 3.6e-108 396.4 466 58.8
Potri.004G085200 Populus trichocarpa HOM05D006674 ORTHO05D007954 2.3e-107 393.7 528 56.1
Haze_14280 Corylus avellana HOM05D006674 ORTHO05D007954 8.8e-107 391.7 635 47.7
Thecc.04G053800 Theobroma cacao HOM05D006674 ORTHO05D007954 3.3e-106 389.8 530 55.7
CSS0023224 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.3e-105 387.9 532 54.9
Thhalv10027712m.g Eutrema salsugineum HOM05D006674 ORTHO05D007954 2.2e-105 387.1 511 55.8
Aa31LG9G17490 Aethionema arabicum HOM05D006674 ORTHO05D007954 5.0e-102 375.9 532 50.8
GSVIVG01030703001 Vitis vinifera HOM05D006674 ORTHO05D007954 1.9e-101 374.0 526 55.1
Atru.chr1.1984 Acer truncatum HOM05D006674 ORTHO05D007954 3.2e-101 373.2 523 54.3
Duzib133G1445 Durio zibethinus HOM05D006674 ORTHO05D007954 1.8e-99 367.5 526 52.9
Cc07_g13280 Coffea canephora HOM05D006674 ORTHO05D007954 2.3e-99 367.1 532 52.1
CsaV3_3G017830 Cucumis sativus L. HOM05D006674 ORTHO05D007954 7.4e-98 362.1 525 52.0
THA.LOC104805245 Tarenaya hassleriana HOM05D006674 ORTHO05D007954 1.4e-96 357.8 530 53.8
AL7G46330 Arabidopsis lyrata HOM05D006674 ORTHO05D007954 3.1e-96 356.7 524 52.3
ECA236G3280 Erigeron canadensis HOM05D006674 ORTHO05D007954 2.6e-95 353.6 433 57.0
BolC4t26017H Brassica oleracea HOM05D006674 ORTHO05D007954 3.5e-95 353.2 536 52.1
Sed0023155 Sechium edule HOM05D006674 ORTHO05D007954 7.7e-95 352.1 530 52.1
A04p10750 Brassica napus HOM05D006674 ORTHO05D007954 1.3e-94 351.3 540 50.9
Prupe.3G166300 Prunus persica HOM05D006674 ORTHO05D007954 1.7e-94 350.9 401 57.9
BraA04t16739Z Brassica rapa HOM05D006674 ORTHO05D007954 5.0e-94 349.4 540 50.9
C04p44470 Brassica napus HOM05D006674 ORTHO05D007954 8.5e-94 348.6 537 52.0
Sabra04G0056300 Salix brachista HOM05D006674 ORTHO05D007954 8.5e-94 348.6 522 52.7
Manes.01G119600 Manihot esculenta HOM05D006674 ORTHO05D007954 1.2e-92 344.7 522 52.3
Lsat_1_v5_gn_1_78040 Lactuca sativa HOM05D006674 ORTHO05D007954 1.6e-92 344.4 447 58.6
vmacro18526 Vaccinium macrocarpon HOM05D006674 ORTHO05D007954 1.6e-92 344.4 531 50.8
Migut.H02229 Erythranthe guttata HOM05D006674 ORTHO05D007954 1.4e-91 341.3 527 49.9
Carub.0007s3275 Capsella rubella HOM05D006674 ORTHO05D007954 4.0e-91 339.7 525 51.2
EL10Ac2g03314 Beta vulgaris HOM05D006674 ORTHO05D007954 3.7e-89 333.2 440 53.4
HanXRQChr09g0259811 Helianthus annuus HOM05D006674 ORTHO05D007954 1.8e-88 330.9 448 55.8
Aqoxy5G02269 Aquilegia oxysepala HOM05D006674 ORTHO05D007954 3.1e-88 330.1 528 49.8
Solyc11g011390.3 Solanum lycopersicum HOM05D006674 ORTHO05D007954 4.5e-87 326.2 522 51.7
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 1.3e-86 324.7 376 64.1
Nitab4.5_0001650g0150 Nicotiana tabacum HOM05D006674 ORTHO05D007954 2.9e-86 323.6 546 47.1
FAN26G0259 Fragaria x ananassa HOM05D006674 ORTHO05D007954 5.5e-85 319.3 491 48.1
Gohir.A07G073700 Gossypium hirsutum HOM05D006674 ORTHO05D007954 1.6e-84 317.8 532 49.2
COL.COLO4_13419 Corchorus olitorius HOM05D006674 ORTHO05D007954 6.1e-84 315.8 460 54.1
CDE06G1904 Ceratophyllum demersum HOM05D006674 ORTHO05D007954 8.0e-84 315.5 463 53.3
MELO3C031718.2 Cucumis melo HOM05D006674 ORTHO05D007954 8.0e-84 315.5 453 54.5
Nitab4.5_0009806g0010 Nicotiana tabacum HOM05D006674 ORTHO05D007954 2.0e-82 310.8 531 47.5
Sopen11g006190 Solanum pennellii HOM05D006674 ORTHO05D007954 1.7e-81 307.8 559 48.1
Ciclev10011395m.g Citrus clementina HOM05D006674 ORTHO05D007954 5.0e-78 296.2 529 48.8
AUR62042219 Chenopodium quinoa HOM05D006674 ORTHO05D007954 7.2e-77 292.4 455 41.1
PGSC0003DMG400013236 Solanum tuberosum HOM05D006674 ORTHO05D007954 3.6e-76 290.0 434 51.6
Gorai.001G082800 Gossypium raimondii HOM05D006674 ORTHO05D007954 1.8e-75 287.7 527 47.2
PGR004G1202 Punica granatum HOM05D006674 ORTHO05D007954 1.8e-75 287.7 480 39.0
Peaxi162Scf00562g00218 Petunia axillaris HOM05D006674 ORTHO05D007954 6.8e-75 285.8 342 59.9
DCAR_016695 Daucus carota HOM05D006674 ORTHO05D007954 2.6e-74 283.9 374 58.8
SGA_v2.0_scaffold108G30962 Striga asiatica HOM05D006674 ORTHO05D007954 1.3e-73 281.6 535 44.5
Lj4C259T11 Lonicera japonica HOM05D006674 ORTHO05D007954 2.2e-73 280.8 287 54.4
Gohir.D07G078400 Gossypium hirsutum HOM05D006674 ORTHO05D007954 6.3e-73 279.3 527 46.5
CARHR215300 Cardamine hirsuta HOM05D006674 ORTHO05D007954 7.5e-66 255.8 291 47.4
unitig_27.g24984 Utricularia gibba HOM05D006674 ORTHO05D007954 9.2e-64 248.8 477 41.1
ClCG05G010650 Citrullus lanatus HOM05D006674 ORTHO05D007954 2.6e-58 230.7 289 45.3
AT5G37590 Arabidopsis thaliana HOM05D006674 ORTHO05D007954 4.4e-58 229.9 525 42.9
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.1e-51 207.2 427 34.4
CAN.G222.57 Capsicum annuum HOM05D006674 ORTHO05D007954 1.2e-50 205.3 235 49.4
QL02p059277 Quercus lobata HOM05D006674 ORTHO05D007954 2.2e-49 201.1 180 57.2
PSO017G4728 Papaver somniferum HOM05D006674 ORTHO05D007954 1.9e-48 198.0 270 60.7
ATR0753G123 Amborella trichopoda HOM05D006674 ORTHO05D007954 9.2e-48 195.7 243 46.5
PSO478G0741 Papaver somniferum HOM05D006674 ORTHO05D007954 9.2e-48 195.7 270 60.0
Os04g0278200 Oryza sativa ssp. japonica HOM05D006674 ORTHO05D007954 5.6e-45 186.4 239 67.8
ATR0753G105 Amborella trichopoda HOM05D006674 ORTHO05D007954 1.9e-37 161.4 129 60.5
CSS0022976 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.5e-34 151.8 97 77.3
ClCG05G010660 Citrullus lanatus HOM05D006674 ORTHO05D007954 3.2e-32 144.1 186 48.9
CAN.G222.56 Capsicum annuum HOM05D006674 ORTHO05D007954 1.3e-30 138.7 278 52.2
HPP92_002281 Vanilla planifolia HOM05D006674 ORTHO05D007954 3.3e-29 134.0 396 39.1
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 8.1e-28 129.4 380 37.1
Zm00001eb221050 Zea mays HOM05D006674 ORTHO05D007954 7.6e-26 122.9 113 55.8
arahy.Tifrunner.gnm1.ann1.EIPD4W Arachis hypogaea HOM05D006674 ORTHO05D007954 9.9e-26 122.5 105 62.9
Mapoly0177s0018 Marchantia polymorpha HOM05D006674 ORTHO05D007954 1.6e-23 115.2 470 24.3
Pp3c16_20720 Physcomitrium patens HOM05D006674 ORTHO05D007954 2.1e-23 114.8 118 45.8
arahy.Tifrunner.gnm1.ann1.UE2S4S Arachis hypogaea HOM05D006674 ORTHO05D007954 1.8e-22 111.7 123 52.0
FAN26G0614 Fragaria x ananassa HOM05D006674 ORTHO05D007954 6.7e-22 109.8 120 48.3
CBR_g12189 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-19 101.3 101 50.5
Glyma.08G281500 Glycine max HOM05D006674 ORTHO05D007954 9.0e-19 99.4 68 70.6
Cpa.g.sc340.5 Carica papaya HOM05D006674 ORTHO05D007954 2.6e-18 97.8 154 39.0
arahy.Tifrunner.gnm1.ann1.67ZR0E Arachis hypogaea HOM05D002184 ORTHO05D002379 6.4e-17 93.2 96 59.4
arahy.Tifrunner.gnm1.ann1.EJ6VAJ Arachis hypogaea HOM05D002184 ORTHO05D002379 1.1e-16 92.4 73 69.9
SalBow1G3838 Salvia bowleyana HOM05D006674 ORTHO05D007954 4.6e-15 87.0 147 39.5
arahy.Tifrunner.gnm1.ann1.7360MD Arachis hypogaea HOM05D002184 ORTHO05D002379 8.7e-14 82.8 74 67.6
Hma1.2p1_1214F.1_g267580 Hydrangea macrophylla HOM05D006674 ORTHO05D007954 1.8e-11 75.1 172 33.1
MCO08G049 Micromonas commoda HOM05D006674 ORTHO05D007954 2.4e-11 74.7 108 39.8
Glyma.20G087302 Glycine max HOM05D006674 ORTHO05D007954 4.0e-11 73.9 46 76.1
SEGI_15610 Sequoiadendron giganteum HOM05D006674 ORTHO05D007954 1.2e-10 72.4 73 52.1
Zm00001eb221070 Zea mays HOM05D006674 ORTHO05D007954 7.6e-10 69.7 166 31.9
QL02p059314 Quercus lobata HOM05D006674 ORTHO05D007954 1.3e-09 68.9 133 36.1
CSS0023659 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 1.4e-08 65.5 56 53.6
QL02p059287 Quercus lobata HOM05D006674 ORTHO05D007954 4.2e-08 63.9 45 62.2
CAN.G691.5 Capsicum annuum HOM05D006674 ORTHO05D007954 7.1e-08 63.2 108 42.6
arahy.Tifrunner.gnm1.ann1.MX1HDN Arachis hypogaea HOM05D006674 ORTHO05D007954 6.0e-07 60.1 42 71.4
arahy.Tifrunner.gnm1.ann1.PS0MXP Arachis hypogaea HOM05D006674 ORTHO05D007954 6.0e-07 60.1 42 71.4
CSS0039398 Camellia sinensis var. sinensis HOM05D006674 ORTHO05D007954 6.0e-07 60.1 48 62.5
arahy.Tifrunner.gnm1.ann1.2ASK5S Arachis hypogaea HOM05D000068 ORTHO05D026879 3.9e-06 57.4 43 67.4
arahy.Tifrunner.gnm1.ann1.N9UN2I Arachis hypogaea HOM05D000138 ORTHO05D000078 3.9e-06 57.4 42 69.0


User provided reference genes

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