Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 7.8e-55 216.9 107 100.0
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 2.2e-49 198.7 107 93.5
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 1.6e-47 192.6 107 90.7
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 5.1e-46 187.6 107 88.8
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 2.6e-42 175.3 107 81.3
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 2.6e-42 175.3 107 83.2
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 4.4e-42 174.5 105 85.7
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 2.9e-41 171.8 108 82.4
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 1.9e-40 169.1 107 83.2
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 3.2e-40 168.3 107 82.2
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 4.1e-40 167.9 106 81.1
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 5.4e-40 167.5 107 82.2
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 5.4e-40 167.5 108 80.6
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 5.4e-40 167.5 107 82.2
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 9.2e-40 166.8 107 82.2
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 1.6e-39 166.0 108 78.7
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 1.6e-39 166.0 107 81.3
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 1.6e-39 166.0 107 79.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 2.7e-39 165.2 107 81.3
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 2.7e-39 165.2 107 80.4
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 6.0e-39 164.1 107 80.4
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 6.0e-39 164.1 107 79.4
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 7.8e-39 163.7 107 79.4
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 1.3e-38 162.9 107 80.4
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.7e-38 162.5 107 79.4
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 1.7e-38 162.5 107 79.4
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 1.7e-38 162.5 107 77.6
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 2.3e-38 162.2 107 78.5
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 2.3e-38 162.2 107 78.5
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 2.3e-38 162.2 107 78.5
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 2.3e-38 162.2 107 78.5
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 2.3e-38 162.2 107 78.5
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 2.3e-38 162.2 107 78.5
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 3.0e-38 161.8 110 78.2
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 3.0e-38 161.8 107 78.5
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 3.0e-38 161.8 107 78.5
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 3.0e-38 161.8 107 78.5
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 3.0e-38 161.8 107 78.5
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 3.0e-38 161.8 107 78.5
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.0e-38 161.8 105 81.0
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 3.0e-38 161.8 105 81.0
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 3.0e-38 161.8 107 78.5
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.0e-38 161.8 107 76.6
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 3.9e-38 161.4 107 77.6
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.9e-38 161.4 107 76.6
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 5.1e-38 161.0 107 77.6
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 5.1e-38 161.0 107 77.6
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 5.1e-38 161.0 107 78.5
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 6.6e-38 160.6 107 77.6
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 6.6e-38 160.6 107 81.3
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 8.6e-38 160.2 108 77.8
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 8.6e-38 160.2 107 78.5
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 8.6e-38 160.2 107 76.6
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 8.6e-38 160.2 107 78.5
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 8.6e-38 160.2 107 78.5
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 1.1e-37 159.8 107 77.6
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 1.1e-37 159.8 107 77.6
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 1.5e-37 159.5 107 77.6
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.5e-37 159.5 107 74.8
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.5e-37 159.5 107 74.8
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 1.5e-37 159.5 107 74.8
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 1.5e-37 159.5 107 77.6
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 1.5e-37 159.5 106 78.3
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 1.9e-37 159.1 107 75.7
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 1.9e-37 159.1 107 74.8
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 1.9e-37 159.1 107 74.8
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.9e-37 159.1 107 78.5
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 1.9e-37 159.1 107 77.6
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 2.5e-37 158.7 107 75.7
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 2.5e-37 158.7 107 75.7
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 2.5e-37 158.7 107 76.6
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 2.5e-37 158.7 107 75.7
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 3.3e-37 158.3 103 80.6
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 3.3e-37 158.3 107 77.6
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 3.3e-37 158.3 107 74.8
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 4.3e-37 157.9 105 78.1
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 4.3e-37 157.9 107 73.8
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 5.6e-37 157.5 107 76.6
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 5.6e-37 157.5 107 76.6
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 5.6e-37 157.5 107 77.6
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 5.6e-37 157.5 106 74.5
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 5.6e-37 157.5 106 74.5
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 5.6e-37 157.5 107 74.8
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 7.3e-37 157.1 107 77.6
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 7.3e-37 157.1 107 75.7
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 9.6e-37 156.8 107 79.4
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 9.6e-37 156.8 108 75.9
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 9.6e-37 156.8 108 75.9
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 1.2e-36 156.4 106 75.5
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 1.6e-36 156.0 106 77.4
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 1.6e-36 156.0 107 75.7
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 2.1e-36 155.6 106 75.5
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 2.8e-36 155.2 107 76.6
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 2.8e-36 155.2 110 74.5
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 2.8e-36 155.2 96 81.2
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 3.6e-36 154.8 107 76.6
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 6.2e-36 154.1 110 73.6
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 8.1e-36 153.7 102 75.5
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 1.1e-35 153.3 107 74.8
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 2.4e-35 152.1 107 74.8
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 2.4e-35 152.1 107 74.8
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 2.4e-35 152.1 107 73.8
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 3.1e-35 151.8 107 74.8
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 6.9e-35 150.6 101 78.2
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 9.0e-35 150.2 93 80.6
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 2.6e-34 148.7 107 73.8
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 3.4e-34 148.3 104 74.0
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 4.4e-34 147.9 91 81.3
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 4.4e-34 147.9 91 81.3
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 5.8e-34 147.5 107 72.0
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 9.9e-34 146.7 102 70.6
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 2.2e-33 145.6 104 72.1
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 1.1e-32 143.3 100 74.0
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 1.4e-32 142.9 100 71.0
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.9e-32 142.5 98 72.4
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 7.1e-32 140.6 73 90.4
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.6e-31 139.4 98 71.4
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 1.0e-30 136.7 77 81.8
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 5.1e-30 134.4 73 86.3
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 8.7e-30 133.7 87 73.6
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 2.1e-28 129.0 69 85.5
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 1.6e-23 112.8 70 71.4
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 3.5e-23 111.7 73 68.5
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 1.0e-22 110.2 94 62.8
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.8e-22 109.4 69 69.6
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 2.1e-20 102.4 62 72.6
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 1.1e-19 100.1 57 82.5
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 1.8e-19 99.4 66 75.8
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 1.8e-19 99.4 66 75.8
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 5.8e-18 94.4 49 87.8
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 2.2e-17 92.4 70 57.1
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 2.9e-17 92.0 109 57.8
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 8.4e-17 90.5 65 60.0
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 4.2e-16 88.2 55 65.5
Gorai.002G169600 Gossypium raimondii HOM05D005547 ORTHO05D006887 4.6e-15 84.7 107 51.4
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 2.9e-09 65.5 67 49.3


User provided reference genes

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