Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24835 Trifolium pratense HOM05D006256 ORTHO05D007833 3.3e-55 218.4 133 100.0
Medtr4g130300 Medicago truncatula HOM05D006256 ORTHO05D007833 9.7e-39 163.7 128 78.9
Psat7g006560 Pisum sativum HOM05D006256 ORTHO05D007833 7.7e-36 154.1 127 74.0
Lj4g0007171 Lotus japonicus HOM05D006256 ORTHO05D007833 2.5e-26 122.5 127 65.4
VMungo1215G1943 Vigna mungo HOM05D006256 ORTHO05D007833 1.2e-25 120.2 122 64.8
Glyma.02G206700 Glycine max HOM05D006256 ORTHO05D007833 1.6e-25 119.8 118 65.3
Phvul.003G153700 Phaseolus vulgaris HOM05D006256 ORTHO05D007833 2.0e-23 112.8 121 62.8
QL02p094215 Quercus lobata HOM05D006256 ORTHO05D007833 8.3e-22 107.5 127 59.8
Glyma.17G071200 Glycine max HOM05D006256 ORTHO05D007833 5.4e-21 104.8 112 60.7
arahy.Tifrunner.gnm1.ann1.RJ4A7B Arachis hypogaea HOM05D006256 ORTHO05D007833 9.1e-21 104.0 126 59.5
arahy.Tifrunner.gnm1.ann1.6DRS7R Arachis hypogaea HOM05D006256 ORTHO05D007833 1.2e-20 103.6 126 58.7
Ciclev10009792m.g Citrus clementina HOM05D006256 ORTHO05D007833 5.9e-20 101.3 110 60.9
Lalb_Chr13g0300681 Lupinus albus HOM05D006256 ORTHO05D007833 5.9e-20 101.3 124 59.7
CANSAT11G0095 Cannabis sativa HOM05D006256 ORTHO05D007833 7.7e-20 100.9 129 57.4
Cfa020783 Carpinus fangiana HOM05D006256 ORTHO05D007833 7.7e-20 100.9 129 55.8
COL.COLO4_05401 Corchorus olitorius HOM05D006256 ORTHO05D007833 1.0e-19 100.5 120 60.0
PGR102G0560 Punica granatum HOM05D006256 ORTHO05D007833 1.3e-19 100.1 134 56.0
Atru.chr7.353 Acer truncatum HOM05D006256 ORTHO05D007833 1.7e-19 99.8 115 57.4
CiPaw.15G164300 Carya illinoinensis HOM05D006256 ORTHO05D007833 2.9e-19 99.0 139 54.0
AUR62025373 Chenopodium quinoa HOM05D006256 ORTHO05D007833 1.1e-18 97.1 133 51.9
AUR62028378 Chenopodium quinoa HOM05D006256 ORTHO05D007833 2.5e-18 95.9 133 50.4
MELO3C010199.2 Cucumis melo HOM05D006256 ORTHO05D007833 3.3e-18 95.5 125 55.2
Prupe.1G102100 Prunus persica HOM05D006256 ORTHO05D007833 3.3e-18 95.5 127 54.3
Cc06_g14490 Coffea canephora HOM05D006256 ORTHO05D007833 4.2e-18 95.1 83 66.3
CsaV3_1G029200 Cucumis sativus L. HOM05D006256 ORTHO05D007833 4.2e-18 95.1 125 55.2
vmacro06052 Vaccinium macrocarpon HOM05D006256 ORTHO05D007833 4.2e-18 95.1 132 49.2
Eucgr.C02515 Eucalyptus grandis HOM05D006256 ORTHO05D007833 5.5e-18 94.7 125 56.0
Gorai.004G106500 Gossypium raimondii HOM05D006256 ORTHO05D007833 5.5e-18 94.7 108 59.3
Gohir.D08G098900 Gossypium hirsutum HOM05D006256 ORTHO05D007833 9.5e-18 94.0 108 59.3
ClCG06G012650 Citrullus lanatus HOM05D006256 ORTHO05D007833 1.2e-17 93.6 125 54.4
Potri.018G102700 Populus trichocarpa HOM05D006256 ORTHO05D007833 1.2e-17 93.6 125 55.2
Haze_19139 Corylus avellana HOM05D006256 ORTHO05D007833 1.6e-17 93.2 129 53.5
Sed0025015 Sechium edule HOM05D006256 ORTHO05D007833 1.6e-17 93.2 126 54.8
Migut.J01392 Erythranthe guttata HOM05D006256 ORTHO05D007833 2.1e-17 92.8 55 83.6
CSS0035436 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 2.8e-17 92.4 130 51.5
Eucgr.L01548 Eucalyptus grandis HOM05D006256 ORTHO05D007833 2.8e-17 92.4 124 55.6
CiPaw.16G106600 Carya illinoinensis HOM05D006256 ORTHO05D007833 3.6e-17 92.0 130 53.8
Aa31LG7G12680 Aethionema arabicum HOM05D006256 ORTHO05D007833 4.7e-17 91.7 56 85.7
Gohir.A08G087800 Gossypium hirsutum HOM05D006256 ORTHO05D007833 4.7e-17 91.7 108 57.4
Thecc.09G154100 Theobroma cacao HOM05D006256 ORTHO05D007833 4.7e-17 91.7 122 54.1
Dinv43283 Davidia involucrata HOM05D006256 ORTHO05D007833 6.1e-17 91.3 125 53.6
Actinidia38660 Actinidia chinensis HOM05D006256 ORTHO05D007833 8.0e-17 90.9 126 51.6
RcHm_v2.0_Chr4g0405501 Rosa chinensis HOM05D006256 ORTHO05D007833 8.0e-17 90.9 124 54.0
Dinv42817 Davidia involucrata HOM05D006256 ORTHO05D007833 1.0e-16 90.5 124 54.0
CDE05G2121 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 1.4e-16 90.1 113 56.6
Sabra18G0088200 Salix brachista HOM05D006256 ORTHO05D007833 1.4e-16 90.1 103 57.3
TAR383G0166 Trochodendron aralioides HOM05D006256 ORTHO05D007833 1.4e-16 90.1 55 89.1
CSS0023303 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 1.8e-16 89.7 56 83.9
Manes.14G113600 Manihot esculenta HOM05D006256 ORTHO05D007833 2.3e-16 89.4 125 51.2
Nn2g12458 Nelumbo nucifera HOM05D006256 ORTHO05D007833 2.3e-16 89.4 124 55.6
EL10Ac8g18906 Beta vulgaris HOM05D006256 ORTHO05D007833 3.0e-16 89.0 139 50.4
Duzib187G1001 Durio zibethinus HOM05D006256 ORTHO05D007833 3.0e-16 89.0 122 54.1
FvH4_4g09690 Fragaria vesca HOM05D006256 ORTHO05D007833 3.0e-16 89.0 124 53.2
Peaxi162Scf00563g00414 Petunia axillaris HOM05D006256 ORTHO05D007833 3.0e-16 89.0 133 48.1
ATR0580G126 Amborella trichopoda HOM05D006256 ORTHO05D007833 4.0e-16 88.6 127 52.8
TAR626G0939 Trochodendron aralioides HOM05D006256 ORTHO05D007833 4.0e-16 88.6 111 57.7
HPP92_010352 Vanilla planifolia HOM05D006256 ORTHO05D007833 4.0e-16 88.6 123 54.5
Aqoxy7G03320 Aquilegia oxysepala HOM05D006256 ORTHO05D007833 5.2e-16 88.2 126 50.0
Cpa.g.sc199.16 Carica papaya HOM05D006256 ORTHO05D007833 5.2e-16 88.2 136 52.2
FAN07G0991 Fragaria x ananassa HOM05D006256 ORTHO05D007833 5.2e-16 88.2 123 53.7
Nitab4.5_0001036g0150 Nicotiana tabacum HOM05D006256 ORTHO05D007833 5.2e-16 88.2 131 48.1
Nitab4.5_0006744g0050 Nicotiana tabacum HOM05D006256 ORTHO05D007833 5.2e-16 88.2 131 48.1
Thhalv10000362m.g Eutrema salsugineum HOM05D006256 ORTHO05D007833 6.8e-16 87.8 56 82.1
FAN22G0392 Fragaria x ananassa HOM05D006256 ORTHO05D007833 6.8e-16 87.8 124 53.2
HanXRQChr12g0357751 Helianthus annuus HOM05D006256 ORTHO05D007833 6.8e-16 87.8 125 50.4
MBI15_g35737_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 6.8e-16 87.8 125 50.4
PSO170G3639 Papaver somniferum HOM05D006256 ORTHO05D007833 1.2e-15 87.0 134 53.7
SGA_v2.0_scaffold222G42778 Striga asiatica HOM05D006256 ORTHO05D007833 1.2e-15 87.0 130 46.2
CDE02G1547 Ceratophyllum demersum HOM05D006256 ORTHO05D007833 1.5e-15 86.7 133 49.6
FAN17G2907 Fragaria x ananassa HOM05D006256 ORTHO05D007833 1.5e-15 86.7 124 53.2
FAN17G2911 Fragaria x ananassa HOM05D006256 ORTHO05D007833 1.5e-15 86.7 124 53.2
Lsat_1_v5_gn_5_88481 Lactuca sativa HOM05D006256 ORTHO05D007833 1.5e-15 86.7 123 49.6
PSO063G2398 Papaver somniferum HOM05D006256 ORTHO05D007833 1.5e-15 86.7 104 56.7
TWI32G1056 Tripterygium wilfordii HOM05D006256 ORTHO05D007833 1.5e-15 86.7 128 50.0
MSTRG.10713 Avicennia marina HOM05D006256 ORTHO05D007833 2.0e-15 86.3 134 50.7
A09p56610 Brassica napus HOM05D006256 ORTHO05D007833 2.0e-15 86.3 119 49.6
BraA09t41052Z Brassica rapa HOM05D006256 ORTHO05D007833 2.0e-15 86.3 119 49.6
Hma1.2p1_1084F.1_g255300 Hydrangea macrophylla HOM05D006256 ORTHO05D007833 2.0e-15 86.3 124 51.6
Solyc07g006000.3 Solanum lycopersicum HOM05D006256 ORTHO05D007833 2.0e-15 86.3 131 47.3
Sopen07g002140 Solanum pennellii HOM05D006256 ORTHO05D007833 2.0e-15 86.3 131 47.3
C04p53670 Brassica napus HOM05D006256 ORTHO05D007833 2.6e-15 85.9 111 53.2
HanXRQChr10g0307761 Helianthus annuus HOM05D006256 ORTHO05D007833 2.6e-15 85.9 122 50.8
SalBow1G2070 Salvia bowleyana HOM05D006256 ORTHO05D007833 3.4e-15 85.5 127 47.2
BcaC07g40961 Brassica carinata HOM05D006256 ORTHO05D007833 4.4e-15 85.1 119 49.6
Migut.K00301 Erythranthe guttata HOM05D006256 ORTHO05D007833 4.4e-15 85.1 132 47.0
ECA234G3762 Erigeron canadensis HOM05D006256 ORTHO05D007833 5.7e-15 84.7 123 50.4
Oeu010284.1 Olea europaea HOM05D006256 ORTHO05D007833 7.5e-15 84.3 125 45.6
Os06g0647100 Oryza sativa ssp. japonica HOM05D006256 ORTHO05D007833 7.5e-15 84.3 56 76.8
Sp4g02990 Schrenkiella parvula HOM05D006256 ORTHO05D007833 7.5e-15 84.3 114 51.8
PGSC0003DMG400011211 Solanum tuberosum HOM05D006256 ORTHO05D007833 9.8e-15 84.0 129 47.3
unitig_748.g7194 Utricularia gibba HOM05D006256 ORTHO05D007833 2.2e-14 82.8 129 48.1
A04p18400 Brassica napus HOM05D006256 ORTHO05D007833 2.8e-14 82.4 132 47.7
BraA04t17452Z Brassica rapa HOM05D006256 ORTHO05D007833 2.8e-14 82.4 132 47.7
Gohir.A04G058552 Gossypium hirsutum HOM05D006256 ORTHO05D007833 2.8e-14 82.4 113 52.2
Actinidia33300 Actinidia chinensis HOM05D006256 ORTHO05D007833 3.7e-14 82.0 134 50.0
CARHR118260 Cardamine hirsuta HOM05D006256 ORTHO05D007833 3.7e-14 82.0 127 48.0
MD04G1052200 Malus domestica HOM05D006256 ORTHO05D007833 3.7e-14 82.0 132 47.7
C08p39560 Brassica napus HOM05D006256 ORTHO05D007833 4.9e-14 81.6 119 48.7
BolC4t26923H Brassica oleracea HOM05D006256 ORTHO05D007833 4.9e-14 81.6 132 47.7
BolC8t51529H Brassica oleracea HOM05D006256 ORTHO05D007833 4.9e-14 81.6 119 48.7
Hund08959 Selenicereus undatus HOM05D006256 ORTHO05D007833 4.9e-14 81.6 136 47.8
Zm00001eb386680 Zea mays HOM05D006256 ORTHO05D007833 6.3e-14 81.3 58 81.0
AT2G24090 Arabidopsis thaliana HOM05D006256 ORTHO05D007833 8.3e-14 80.9 125 48.0
AL4G14180 Arabidopsis lyrata HOM05D006256 ORTHO05D007833 1.4e-13 80.1 127 48.0
THA.LOC104803911 Tarenaya hassleriana HOM05D006256 ORTHO05D007833 1.8e-13 79.7 134 48.5
SEGI_40166 Sequoiadendron giganteum HOM05D006256 ORTHO05D007833 3.2e-13 79.0 121 48.8
Ah.09g228670 Amaranthus hybridus HOM05D006256 ORTHO05D007833 4.1e-13 78.6 134 49.3
Carub.0004s0326 Capsella rubella HOM05D006256 ORTHO05D007833 7.0e-13 77.8 126 47.6
CAN.G1190.22 Capsicum annuum HOM05D006256 ORTHO05D007833 7.0e-13 77.8 128 45.3
CBR_g46223 Chara braunii HOM05D006256 ORTHO05D007833 1.2e-12 77.0 53 77.4
GSVIVG01012561001 Vitis vinifera HOM05D006256 ORTHO05D007833 2.3e-11 72.8 44 88.6
GSVIVG01012574001 Vitis vinifera HOM05D006256 ORTHO05D007833 2.3e-11 72.8 44 88.6
SMO164G0197 Selaginella moellendorffii HOM05D006256 ORTHO05D007833 3.3e-10 68.9 57 64.9
MBI15_g42789_MAGBIO Magnolia biondii HOM05D006256 ORTHO05D007833 3.6e-09 65.5 47 68.1
SGA_v2.0_scaffold12G06024 Striga asiatica HOM05D006256 ORTHO05D007833 8.0e-09 64.3 84 48.8
Pp3c22_13420 Physcomitrium patens HOM05D006256 ORTHO05D007833 1.0e-08 63.9 49 69.4
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.3e-08 62.8 49 67.3
CSS0026373 Camellia sinensis var. sinensis HOM05D006256 ORTHO05D007833 5.8e-07 58.2 110 41.8
Rhsim03G0259400 Rhododendron simsii HOM05D006256 ORTHO05D007833 5.8e-07 58.2 40 77.5
Zm00001eb000270 Zea mays HOM05D006256 ORTHO05D007833 6.4e-06 54.7 48 70.8


User provided reference genes

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