Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 1.1e-165 587.8 382 100.0
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 2.1e-129 467.2 362 89.8
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.0e-120 438.3 335 90.7
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.6e-84 318.2 375 68.5
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 7.3e-82 309.3 375 65.1
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.6e-81 307.0 356 71.1
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 1.0e-80 305.4 372 68.8
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.3e-75 288.5 353 65.4
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 5.6e-74 283.1 347 65.7
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 2.1e-73 281.2 353 64.6
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 6.2e-73 279.6 352 64.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.4e-72 278.5 365 62.2
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 4.0e-72 276.9 350 64.3
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 1.2e-71 275.4 375 60.0
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 3.4e-71 273.9 375 61.1
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 4.9e-70 270.0 373 54.2
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 7.8e-68 262.7 373 60.3
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 1.3e-67 261.9 369 60.4
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.7e-67 261.5 372 60.5
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 2.3e-67 261.2 369 60.2
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.9e-66 258.1 369 56.9
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 1.9e-66 258.1 398 58.0
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 3.3e-66 257.3 377 57.3
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 5.6e-66 256.5 357 59.9
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 5.6e-66 256.5 383 60.1
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 7.3e-66 256.1 375 58.4
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 9.5e-66 255.8 346 47.1
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 9.5e-66 255.8 346 47.1
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 9.5e-66 255.8 354 63.0
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.4e-64 251.9 361 59.8
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 1.8e-64 251.5 371 58.0
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 2.3e-64 251.1 344 60.5
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 4.0e-64 250.4 387 57.4
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 5.2e-64 250.0 337 60.8
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 2.0e-63 248.1 344 59.6
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 2.6e-63 247.7 374 44.7
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 3.4e-63 247.3 345 60.3
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 5.8e-63 246.5 367 59.9
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 9.9e-63 245.7 370 58.1
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 1.3e-62 245.4 370 58.1
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 1.7e-62 245.0 372 44.4
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 3.7e-62 243.8 175 66.3
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 3.7e-62 243.8 380 58.2
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 6.4e-62 243.0 392 57.7
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 1.9e-61 241.5 372 58.1
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 3.2e-61 240.7 364 44.5
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 1.6e-60 238.4 338 61.5
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.5e-60 237.3 314 65.3
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.3e-59 235.3 343 59.5
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 3.0e-59 234.2 356 60.4
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 1.1e-58 232.3 209 57.9
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.9e-58 231.5 343 59.5
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 4.3e-58 230.3 377 56.5
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.2e-57 228.8 391 54.0
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 4.7e-57 226.9 175 60.6
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 1.4e-56 225.3 386 55.4
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.1e-56 224.2 333 59.8
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 4.0e-56 223.8 197 55.8
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 8.9e-56 222.6 370 56.5
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 8.9e-56 222.6 208 54.3
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.6e-55 221.1 203 54.7
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 2.6e-55 221.1 185 57.3
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 3.4e-55 220.7 358 58.4
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 2.2e-54 218.0 204 53.9
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 3.8e-54 217.2 200 54.0
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 6.0e-52 209.9 169 57.4
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.0e-51 209.1 174 54.6
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.3e-51 208.0 165 55.8
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 8.7e-51 206.1 183 53.6
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 3.6e-49 200.7 223 48.4
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 1.1e-48 199.1 223 48.0
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 4.0e-48 197.2 223 45.7
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 5.3e-48 196.8 204 48.0
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 1.2e-47 195.7 223 46.2
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 7.6e-47 193.0 191 50.8
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.7e-43 181.8 207 46.4
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 2.3e-43 181.4 123 63.4
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 3.6e-41 174.1 144 56.2
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 3.4e-39 167.5 243 67.5
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 2.7e-36 157.9 113 68.1
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 8.7e-35 152.9 199 76.9
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 2.1e-33 148.3 92 75.0
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 3.7e-33 147.5 175 42.9
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 2.6e-31 141.4 204 40.7
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 4.2e-29 134.0 341 50.7
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 3.0e-27 127.9 367 40.6
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 2.5e-26 124.8 94 69.1
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.9e-24 116.7 72 73.6
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 1.3e-22 112.5 187 33.7
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 1.2e-20 105.9 208 68.8
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 2.1e-20 105.1 131 42.0
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 9.7e-18 96.3 67 68.7
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.2e-15 89.4 384 41.9
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 3.8e-14 84.3 85 47.1
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 3.8e-14 84.3 85 47.1
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 5.5e-13 80.5 89 43.8
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 5.5e-13 80.5 89 43.8
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.1e-10 72.8 71 49.3
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 7.7e-07 60.1 147 24.5
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 1.0e-06 59.7 177 31.1
Sabra10G0031400 Salix brachista HOM05D006740 ORTHO05D008571 2.9e-06 58.2 147 23.8
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 3.8e-06 57.8 154 24.0
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 5.0e-06 57.4 165 23.0
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 5.0e-06 57.4 190 31.1


User provided reference genes

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