Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 4.8e-45 184.1 91 100.0
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 2.5e-30 135.2 76 88.2
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 1.1e-28 129.8 76 85.5
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 3.1e-28 128.3 85 80.0
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 6.9e-28 127.1 76 84.2
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 4.5e-27 124.4 87 74.7
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 7.6e-27 123.6 76 80.3
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.3e-26 122.9 76 80.3
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.7e-26 122.5 76 80.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 2.9e-26 121.7 76 78.9
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 8.4e-26 120.2 76 80.3
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 1.4e-25 119.4 79 77.2
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.9e-25 119.0 76 76.3
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 3.2e-25 118.2 87 69.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 7.1e-25 117.1 76 75.0
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 9.3e-25 116.7 76 77.6
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 3.5e-24 114.8 75 77.3
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 3.5e-24 114.8 75 76.0
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.0e-24 114.0 76 75.0
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 6.0e-24 114.0 75 76.0
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 6.0e-24 114.0 76 72.4
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.9e-24 113.6 76 75.0
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 7.9e-24 113.6 76 75.0
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.0e-23 113.2 76 75.0
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.0e-23 111.7 80 76.2
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 3.0e-23 111.7 75 74.7
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 6.7e-23 110.5 76 71.1
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 8.7e-23 110.2 76 73.7
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.7e-23 110.2 76 73.7
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 8.7e-23 110.2 76 73.7
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 8.7e-23 110.2 73 76.7
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.1e-22 109.8 76 69.7
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.5e-22 109.4 78 73.1
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.9e-22 109.0 84 70.2
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.9e-22 109.0 84 70.2
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.9e-22 109.0 76 72.4
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.9e-22 109.0 75 73.3
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 2.5e-22 108.6 75 73.3
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.5e-22 108.6 76 73.7
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.3e-22 108.2 76 72.4
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 5.7e-22 107.5 76 69.7
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 5.7e-22 107.5 76 69.7
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 5.7e-22 107.5 81 67.9
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 7.4e-22 107.1 69 76.8
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 7.4e-22 107.1 78 71.8
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 1.3e-21 106.3 69 76.8
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 8.2e-21 103.6 78 71.8
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.1e-20 101.3 76 65.8
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.2e-19 99.8 73 68.5
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.5e-19 99.4 86 61.6
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 2.0e-19 99.0 75 65.3
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 4.5e-19 97.8 76 65.8
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 5.9e-19 97.4 73 69.9
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 5.9e-19 97.4 95 57.9
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 1.0e-18 96.7 75 62.7
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.3e-18 96.3 75 62.7
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.7e-18 95.9 73 69.9
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.7e-18 95.9 75 62.7
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 1.7e-18 95.9 71 69.0
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 2.9e-18 95.1 75 61.3
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.8e-18 94.7 71 67.6
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 5.0e-18 94.4 74 66.2
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 6.5e-18 94.0 71 66.2
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 2.5e-17 92.0 76 60.5
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.6e-16 89.4 73 64.4
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.7e-16 88.6 76 60.5
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 1.8e-15 85.9 76 56.6
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 5.1e-15 84.3 85 57.6
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 4.3e-14 81.3 76 56.6
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.3e-14 81.3 79 55.7
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 5.7e-14 80.9 87 51.7
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.3e-13 79.7 76 55.3
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.7e-13 79.3 76 56.6
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.8e-13 78.6 56 64.3
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 8.2e-13 77.0 75 53.3
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 1.4e-12 76.3 87 49.4
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.1e-12 75.1 71 59.2
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 3.1e-12 75.1 76 53.9
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 5.3e-12 74.3 74 51.4
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.2e-11 73.2 76 51.3
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.5e-11 72.8 75 49.3
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.6e-11 72.0 87 48.3
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 3.4e-11 71.6 75 52.0
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 3.4e-11 71.6 87 47.1
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 4.5e-11 71.2 76 47.4
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 7.7e-11 70.5 76 51.3
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 7.7e-11 70.5 76 51.3
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.3e-10 69.7 76 51.3
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 1.3e-10 69.7 76 50.0
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.7e-10 69.3 85 48.2
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 1.7e-10 69.3 85 48.2
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 2.2e-10 68.9 87 46.0
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 2.2e-10 68.9 75 50.7
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 2.2e-10 68.9 76 48.7
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 2.9e-10 68.6 76 47.4
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.9e-10 68.6 87 46.0
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 5.0e-10 67.8 70 51.4
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 6.5e-10 67.4 76 50.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 8.5e-10 67.0 74 50.0
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.1e-09 66.6 76 48.7
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.1e-09 66.6 76 47.4
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 1.4e-09 66.2 88 48.9
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.9e-09 65.9 76 46.1
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.9e-09 65.9 87 44.8
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 2.5e-09 65.5 73 50.7
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 2.5e-09 65.5 88 45.5
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.5e-09 65.5 88 45.5
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.2e-09 65.1 77 42.9
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 3.2e-09 65.1 88 44.3
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 4.2e-09 64.7 40 77.5
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 7.2e-09 63.9 82 43.9
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 9.4e-09 63.5 75 46.7
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.2e-08 63.2 87 46.0
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.6e-08 62.8 76 44.7
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.6e-08 62.8 76 44.7
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 2.7e-08 62.0 85 43.5
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 4.7e-08 61.2 37 78.4
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 3.0e-07 58.5 66 42.4
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 5.1e-07 57.8 39 66.7
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 5.1e-07 57.8 39 66.7
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 6.7e-07 57.4 67 46.3
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 2.6e-06 55.5 66 47.0


User provided reference genes

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