Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24719 Trifolium pratense HOM05D007822 ORTHO05D009360 7.3e-83 310.5 150 100.0
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 1.3e-55 219.9 123 87.8
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 2.8e-50 202.2 133 74.4
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 9.0e-41 170.6 124 66.9
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 4.6e-37 158.3 124 62.9
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 2.3e-36 156.0 124 62.9
Medtr3g084660 Medicago truncatula HOM05D007822 ORTHO05D009360 5.1e-36 154.8 123 64.2
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 1.9e-35 152.9 123 65.0
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 2.1e-34 149.4 124 62.1
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 2.1e-34 149.4 124 62.1
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 5.3e-33 144.8 123 58.5
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 9.0e-33 144.1 115 64.3
TPR.G25296 Trifolium pratense HOM05D007822 ORTHO05D009360 2.2e-31 139.4 80 85.0
Medtr3g084700 Medicago truncatula HOM05D007822 ORTHO05D009360 3.2e-30 135.6 119 60.5
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 2.5e-22 109.4 124 46.8
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 2.5e-22 109.4 123 50.4
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 1.0e-20 104.0 121 48.8
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 2.3e-20 102.8 127 46.5
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 1.9e-19 99.8 82 62.2
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 6.3e-18 94.7 122 45.1
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 2.4e-17 92.8 121 43.8
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.4e-17 92.8 133 42.1
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 9.0e-17 90.9 122 41.8
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.2e-16 90.5 122 41.8
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 1.2e-16 90.5 130 40.8
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 3.4e-16 89.0 139 36.7
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 1.0e-15 87.4 112 44.6
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.2e-15 86.3 122 40.2
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.5e-15 84.7 122 41.0
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.9e-14 83.2 122 40.2
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.5e-14 82.8 122 39.3
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.2e-14 82.4 122 41.0
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 9.3e-14 80.9 123 39.0
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 6.1e-13 78.2 129 36.4
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 5.1e-12 75.1 123 36.6
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 9.7e-11 70.9 123 37.4
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.3e-10 70.5 123 36.6
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 2.8e-10 69.3 126 34.1
COL.COLO4_22097 Corchorus olitorius HOM05D002420 ORTHO05D002422 1.1e-09 67.4 129 31.8
Duzib147G0480 Durio zibethinus HOM05D002420 ORTHO05D002422 1.1e-09 67.4 128 30.5
HanXRQChr02g0054011 Helianthus annuus HOM05D002420 ORTHO05D002422 1.1e-09 67.4 129 29.5
RcHm_v2.0_Chr2g0101871 Rosa chinensis HOM05D002420 ORTHO05D002422 1.1e-09 67.4 130 29.2
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.4e-09 67.0 90 43.3
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 2.4e-09 66.2 123 35.8
Potri.007G027200 Populus trichocarpa HOM05D002420 ORTHO05D002422 4.1e-09 65.5 135 32.6
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.9e-09 64.7 89 43.8
Thecc.01G037600 Theobroma cacao HOM05D002420 ORTHO05D002422 6.9e-09 64.7 128 29.7
FAN28G0805 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.2e-08 63.9 130 29.2
Haze_15106 Corylus avellana HOM05D002420 ORTHO05D002422 1.5e-08 63.5 126 31.7
arahy.Tifrunner.gnm1.ann1.2QW5CK Arachis hypogaea HOM05D007822 ORTHO05D009360 2.0e-08 63.2 123 35.0
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 2.0e-08 63.2 120 35.8
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 2.0e-08 63.2 122 36.9
Cpa.g.sc544.2 Carica papaya HOM05D002420 ORTHO05D002422 2.0e-08 63.2 128 28.9
MD02G1150300 Malus domestica HOM05D002420 ORTHO05D002422 2.6e-08 62.8 126 31.0
MD15G1264700 Malus domestica HOM05D002420 ORTHO05D002422 2.6e-08 62.8 126 31.0
CiPaw.01G036300 Carya illinoinensis HOM05D002420 ORTHO05D002422 3.4e-08 62.4 126 31.7
FvH4_1g13470 Fragaria vesca HOM05D002420 ORTHO05D002422 3.4e-08 62.4 119 30.3
FAN19G1320 Fragaria x ananassa HOM05D002420 ORTHO05D002422 3.4e-08 62.4 119 30.3
Sopen02g030130 Solanum pennellii HOM05D002420 ORTHO05D002422 3.4e-08 62.4 126 30.2
Cfa004296 Carpinus fangiana HOM05D002420 ORTHO05D002422 4.5e-08 62.0 126 31.7
RcHm_v2.0_Chr2g0101881 Rosa chinensis HOM05D002420 ORTHO05D002422 4.5e-08 62.0 127 28.3
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 5.9e-08 61.6 123 34.1
Dinv26823 Davidia involucrata HOM05D002420 ORTHO05D002422 5.9e-08 61.6 128 28.1
FvH4_1g13480 Fragaria vesca HOM05D002420 ORTHO05D002422 5.9e-08 61.6 121 28.1
FAN26G2215 Fragaria x ananassa HOM05D002420 ORTHO05D002422 5.9e-08 61.6 121 28.1
PGSC0003DMG400014891 Solanum tuberosum HOM05D002420 ORTHO05D002422 5.9e-08 61.6 137 27.7
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 7.7e-08 61.2 112 36.6
Dinv39969 Davidia involucrata HOM05D002420 ORTHO05D002422 7.7e-08 61.2 126 28.6
RcHm_v2.0_Chr2g0101851 Rosa chinensis HOM05D002420 ORTHO05D002422 1.0e-07 60.8 129 28.7
Atru.chr3.562 Acer truncatum HOM05D002420 ORTHO05D002422 1.3e-07 60.5 124 28.2
Manes.02G092400 Manihot esculenta HOM05D002420 ORTHO05D002422 1.3e-07 60.5 127 29.9
QL06p045710 Quercus lobata HOM05D002420 ORTHO05D002422 1.3e-07 60.5 126 30.2
CAN.G358.109 Capsicum annuum HOM05D002420 ORTHO05D002422 1.7e-07 60.1 126 31.0
FAN23G1330 Fragaria x ananassa HOM05D002420 ORTHO05D002422 1.7e-07 60.1 126 31.0
MD15G1264800 Malus domestica HOM05D002420 ORTHO05D002422 1.7e-07 60.1 126 27.0
Nitab4.5_0003233g0040 Nicotiana tabacum HOM05D002420 ORTHO05D002422 1.7e-07 60.1 128 28.1
Oeu024879.1 Olea europaea HOM05D002420 ORTHO05D002422 1.7e-07 60.1 128 30.5
Prupe.7G152900 Prunus persica HOM05D002420 ORTHO05D002422 1.7e-07 60.1 129 27.9
PGSC0003DMG400015473 Solanum tuberosum HOM05D002420 ORTHO05D002422 1.7e-07 60.1 129 28.7
FAN19G0041 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.2e-07 59.7 121 28.1
FAN23G2135 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.2e-07 59.7 121 27.3
Nitab4.5_0000136g0430 Nicotiana tabacum HOM05D002420 ORTHO05D002422 2.2e-07 59.7 131 29.0
Sabra07G0023700 Salix brachista HOM05D002420 ORTHO05D002422 2.2e-07 59.7 121 31.4
Ciclev10025746m.g Citrus clementina HOM05D002420 ORTHO05D002422 2.9e-07 59.3 137 27.7
FAN23G1316 Fragaria x ananassa HOM05D002420 ORTHO05D002422 2.9e-07 59.3 116 29.3
Lsat_1_v5_gn_6_92061 Lactuca sativa HOM05D001729 ORTHO05D001155 2.9e-07 59.3 55 52.7
PGSC0003DMG400014906 Solanum tuberosum HOM05D002420 ORTHO05D002422 3.8e-07 58.9 126 29.4
FvH4_1g13490 Fragaria vesca HOM05D002420 ORTHO05D002422 5.0e-07 58.5 126 32.5
FAN19G1318 Fragaria x ananassa HOM05D002420 ORTHO05D002422 5.0e-07 58.5 126 32.5
Phvul.006G120400 Phaseolus vulgaris HOM05D007162 ORTHO05D007631 5.0e-07 58.5 118 32.2
Sabra05G0102300 Salix brachista HOM05D002420 ORTHO05D002422 5.0e-07 58.5 135 30.4
TAR376G1077 Trochodendron aralioides HOM05D002420 ORTHO05D002422 5.0e-07 58.5 126 27.8
VMungo0540G1379 Vigna mungo HOM05D007162 ORTHO05D007631 5.0e-07 58.5 118 32.2
DCAR_015928 Daucus carota HOM05D002420 ORTHO05D002422 6.5e-07 58.2 126 30.2
FAN28G2838 Fragaria x ananassa HOM05D002420 ORTHO05D002422 6.5e-07 58.2 128 28.9
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.5e-07 58.2 97 40.2
Prupe.7G152800 Prunus persica HOM05D002420 ORTHO05D002422 6.5e-07 58.2 120 30.0
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 8.5e-07 57.8 114 34.2
CSS0029544 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 8.5e-07 57.8 119 26.9
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 8.5e-07 57.8 131 28.2
AUR62003166 Chenopodium quinoa HOM05D002420 ORTHO05D002422 1.1e-06 57.4 135 25.9
Cc07_g09370 Coffea canephora HOM05D002420 ORTHO05D002422 1.1e-06 57.4 126 28.6
Aqoxy6G01076 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 1.4e-06 57.0 128 27.3
CANSAT01G0893 Cannabis sativa HOM05D002420 ORTHO05D002422 1.4e-06 57.0 123 29.3
MD02G1150200 Malus domestica HOM05D002420 ORTHO05D002422 1.4e-06 57.0 135 28.9
Peaxi162Scf00008g00373 Petunia axillaris HOM05D002420 ORTHO05D002422 1.4e-06 57.0 131 29.8
QL06p045688 Quercus lobata HOM05D002420 ORTHO05D002422 1.4e-06 57.0 127 27.6
unitig_899.g14987 Utricularia gibba HOM05D002420 ORTHO05D002422 1.4e-06 57.0 125 28.8
HanXRQChr14g0441221 Helianthus annuus HOM05D002420 ORTHO05D002422 1.9e-06 56.6 128 27.3
Solyc02g062800.2 Solanum lycopersicum HOM05D002420 ORTHO05D002422 1.9e-06 56.6 128 29.7
CAN.G53.20 Capsicum annuum HOM05D002420 ORTHO05D002422 2.5e-06 56.2 134 27.6
CiPaw.01G036200 Carya illinoinensis HOM05D002420 ORTHO05D002422 2.5e-06 56.2 126 30.2
Sopen02g013840 Solanum pennellii HOM05D002420 ORTHO05D002422 2.5e-06 56.2 128 29.7
MSTRG.3832 Avicennia marina HOM05D002420 ORTHO05D002422 3.2e-06 55.8 119 27.7
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 3.2e-06 55.8 136 25.0
SGA_v2.0_scaffold34G13656 Striga asiatica HOM05D002420 ORTHO05D002422 3.2e-06 55.8 129 27.9
MD02G1150100 Malus domestica HOM05D002420 ORTHO05D002422 4.2e-06 55.5 119 30.3
Aqoxy3G00361 Aquilegia oxysepala HOM05D002420 ORTHO05D002422 5.5e-06 55.1 130 32.3
Hma1.2p1_0400F.1_g144540 Hydrangea macrophylla HOM05D002420 ORTHO05D002422 5.5e-06 55.1 119 30.3
TAR628G0483 Trochodendron aralioides HOM05D002420 ORTHO05D002422 5.5e-06 55.1 126 27.0
Atru.chr3.556 Acer truncatum HOM05D002420 ORTHO05D002422 7.2e-06 54.7 126 30.2
EL10Ac2g03769 Beta vulgaris HOM05D002420 ORTHO05D002422 7.2e-06 54.7 146 28.1
EL10Ac2g03773 Beta vulgaris HOM05D002420 ORTHO05D002422 7.2e-06 54.7 146 28.1
COL.COLO4_22098 Corchorus olitorius HOM05D002420 ORTHO05D002422 7.2e-06 54.7 128 28.1
Duzib147G0753 Durio zibethinus HOM05D002420 ORTHO05D002422 7.2e-06 54.7 126 28.6
Migut.H02492 Erythranthe guttata HOM05D002420 ORTHO05D002422 7.2e-06 54.7 121 28.1
Glyma.09G032600 Glycine max HOM05D007162 ORTHO05D007631 9.4e-06 54.3 118 28.8
Lj6g0014268 Lotus japonicus HOM05D007162 ORTHO05D007631 9.4e-06 54.3 118 28.8
Prupe.7G153000 Prunus persica HOM05D002420 ORTHO05D002422 9.4e-06 54.3 119 28.6
Solyc02g085440.4 Solanum lycopersicum HOM05D002420 ORTHO05D002422 9.4e-06 54.3 126 25.4


User provided reference genes

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