Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24701 Trifolium pratense HOM05D002865 ORTHO05D003289 4.4e-53 211.1 110 100.0
TPR.G30406 Trifolium pratense HOM05D002865 ORTHO05D003289 6.2e-31 137.5 102 75.5
Psat5g224800 Pisum sativum HOM05D002865 ORTHO05D003289 6.0e-26 120.9 103 65.0
Medtr3g011800 Medicago truncatula HOM05D002865 ORTHO05D003289 1.7e-25 119.4 75 78.7
Ca_26366_v3 Cicer arietinum L. HOM05D002865 ORTHO05D003289 5.6e-24 114.4 76 77.6
Glyma.06G312400 Glycine max HOM05D002865 ORTHO05D003289 4.7e-23 111.3 76 75.0
Lalb_Chr15g0079271 Lupinus albus HOM05D002865 ORTHO05D003289 1.4e-22 109.8 85 64.7
Glyma.04G126600 Glycine max HOM05D002865 ORTHO05D003289 1.5e-21 106.3 76 73.7
VMungo1080G0036 Vigna mungo HOM05D002865 ORTHO05D003289 2.0e-21 105.9 76 73.7
Lj3g0025610 Lotus japonicus HOM05D002865 ORTHO05D003289 2.6e-21 105.5 78 73.1
Phvul.005G013400 Phaseolus vulgaris HOM05D002865 ORTHO05D003289 1.7e-20 102.8 73 74.0
arahy.Tifrunner.gnm1.ann1.P3RAPG Arachis hypogaea HOM05D002865 ORTHO05D003289 1.1e-16 90.1 94 53.2
QL02p028873 Quercus lobata HOM05D002865 ORTHO05D003289 3.3e-16 88.6 85 58.8
GSVIVG01019622001 Vitis vinifera HOM05D002865 ORTHO05D003289 5.6e-16 87.8 107 47.7
CANSAT21G1641 Cannabis sativa HOM05D002865 ORTHO05D003289 2.8e-15 85.5 107 44.9
Potri.001G086100 Populus trichocarpa HOM05D002865 ORTHO05D003289 4.7e-15 84.7 107 48.6
Potri.003G144700 Populus trichocarpa HOM05D002865 ORTHO05D003289 6.2e-15 84.3 102 49.0
Prupe.5G127000 Prunus persica HOM05D002865 ORTHO05D003289 8.1e-15 84.0 78 59.0
Lj2P159T18 Lonicera japonica HOM05D002865 ORTHO05D003289 1.1e-14 83.6 102 48.0
Manes.10G065100 Manihot esculenta HOM05D002865 ORTHO05D003289 1.4e-14 83.2 75 58.7
CiPaw.12G079100 Carya illinoinensis HOM05D002865 ORTHO05D003289 1.8e-14 82.8 107 44.9
RcHm_v2.0_Chr7g0186491 Rosa chinensis HOM05D002865 ORTHO05D003289 1.8e-14 82.8 107 46.7
Sabra03G0105300 Salix brachista HOM05D002865 ORTHO05D003289 1.8e-14 82.8 107 46.7
Hma1.2p1_0456F.1_g156480 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 2.4e-14 82.4 85 51.8
MD14G1135500 Malus domestica HOM05D002865 ORTHO05D003289 3.1e-14 82.0 107 44.9
Rhsim02G0250100 Rhododendron simsii HOM05D002865 ORTHO05D003289 5.2e-14 81.3 78 56.4
Haze_09131 Corylus avellana HOM05D002865 ORTHO05D003289 9.0e-14 80.5 78 57.7
FAN18G0892 Fragaria x ananassa HOM05D002865 ORTHO05D003289 9.0e-14 80.5 107 44.9
MD06G1114200 Malus domestica HOM05D002865 ORTHO05D003289 9.0e-14 80.5 107 43.9
ClCG01G001620 Citrullus lanatus HOM05D002865 ORTHO05D003289 1.2e-13 80.1 78 53.8
FAN08G2803 Fragaria x ananassa HOM05D002865 ORTHO05D003289 1.2e-13 80.1 107 44.9
CsaV3_5G001780 Cucumis sativus L. HOM05D002865 ORTHO05D003289 2.0e-13 79.3 78 52.6
FvH4_5g11380 Fragaria vesca HOM05D002865 ORTHO05D003289 2.0e-13 79.3 107 43.9
MELO3C005775.2 Cucumis melo HOM05D002865 ORTHO05D003289 2.6e-13 79.0 78 52.6
Dinv09786 Davidia involucrata HOM05D002865 ORTHO05D003289 2.6e-13 79.0 109 44.0
Duzib205G0689 Durio zibethinus HOM05D002865 ORTHO05D003289 2.6e-13 79.0 102 47.1
FvH4_4g07840 Fragaria vesca HOM05D002865 ORTHO05D003289 2.6e-13 79.0 107 43.9
FAN04G1202 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.6e-13 79.0 78 53.8
FAN12G2865 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.6e-13 79.0 107 43.9
Atru.chr9.1914 Acer truncatum HOM05D002865 ORTHO05D003289 3.4e-13 78.6 102 47.1
CSS0036805 Camellia sinensis var. sinensis HOM05D002865 ORTHO05D003289 3.4e-13 78.6 80 55.0
FAN07G0927 Fragaria x ananassa HOM05D002865 ORTHO05D003289 3.4e-13 78.6 107 43.9
Gorai.008G257000 Gossypium raimondii HOM05D002865 ORTHO05D003289 3.4e-13 78.6 107 45.8
Sed0008026 Sechium edule HOM05D002865 ORTHO05D003289 3.4e-13 78.6 78 53.8
Eucgr.D01699 Eucalyptus grandis HOM05D002865 ORTHO05D003289 4.4e-13 78.2 102 47.1
COL.COLO4_10768 Corchorus olitorius HOM05D002865 ORTHO05D003289 5.8e-13 77.8 107 43.9
Duzib084G0225 Durio zibethinus HOM05D002865 ORTHO05D003289 5.8e-13 77.8 102 46.1
Sabra01G0062400 Salix brachista HOM05D002865 ORTHO05D003289 5.8e-13 77.8 107 45.8
HPP92_022373 Vanilla planifolia HOM05D002865 ORTHO05D003289 5.8e-13 77.8 98 43.9
FAN22G2270 Fragaria x ananassa HOM05D002865 ORTHO05D003289 9.9e-13 77.0 107 43.0
Gohir.D12G239900 Gossypium hirsutum HOM05D002865 ORTHO05D003289 9.9e-13 77.0 107 44.9
Ciclev10020226m.g Citrus clementina HOM05D002865 ORTHO05D003289 1.3e-12 76.6 78 53.8
FAN17G1400 Fragaria x ananassa HOM05D002865 ORTHO05D003289 2.2e-12 75.9 107 43.0
Gohir.A12G238800 Gossypium hirsutum HOM05D002865 ORTHO05D003289 2.2e-12 75.9 107 43.9
Thecc.03G224100 Theobroma cacao HOM05D002865 ORTHO05D003289 2.2e-12 75.9 102 46.1
TWI15G0059 Tripterygium wilfordii HOM05D002865 ORTHO05D003289 2.9e-12 75.5 80 51.2
Ah.07g197790 Amaranthus hybridus HOM05D002865 ORTHO05D003289 3.8e-12 75.1 73 50.7
Cpa.g.c35773 Carica papaya HOM05D002865 ORTHO05D003289 3.8e-12 75.1 76 52.6
Cpa.g.sc210.6 Carica papaya HOM05D002865 ORTHO05D003289 4.9e-12 74.7 76 52.6
Dinv03435 Davidia involucrata HOM05D002865 ORTHO05D003289 8.4e-12 73.9 107 43.0
PGR031G2734 Punica granatum HOM05D002865 ORTHO05D003289 1.4e-11 73.2 103 43.7
AUR62007031 Chenopodium quinoa HOM05D002865 ORTHO05D003289 1.9e-11 72.8 109 38.5
AUR62019895 Chenopodium quinoa HOM05D002865 ORTHO05D003289 2.4e-11 72.4 73 49.3
Oeu013551.1 Olea europaea HOM05D002865 ORTHO05D003289 2.4e-11 72.4 73 53.4
Aqoxy7G00042 Aquilegia oxysepala HOM05D002865 ORTHO05D003289 4.2e-11 71.6 109 38.5
Cpa.g.c33464 Carica papaya HOM05D002865 ORTHO05D003289 4.2e-11 71.6 76 51.3
Sc01g0010530 Simmondsia chinensis HOM05D002865 ORTHO05D003289 5.4e-11 71.2 76 47.4
Actinidia22193 Actinidia chinensis HOM05D002865 ORTHO05D003289 1.6e-10 69.7 73 53.4
EL10Ac5g12463 Beta vulgaris HOM05D002865 ORTHO05D003289 1.6e-10 69.7 72 47.2
CiPaw.11G114700 Carya illinoinensis HOM05D002865 ORTHO05D003289 1.6e-10 69.7 78 50.0
PGSC0003DMG400032128 Solanum tuberosum HOM05D002865 ORTHO05D003289 1.6e-10 69.7 78 47.4
Solyc01g005670.3 Solanum lycopersicum HOM05D002865 ORTHO05D003289 2.7e-10 68.9 78 47.4
MBI04_g36400_MAGBIO Magnolia biondii HOM05D002865 ORTHO05D003289 3.5e-10 68.6 80 42.5
HanXRQChr17g0534361 Helianthus annuus HOM05D002865 ORTHO05D003289 4.6e-10 68.2 100 42.0
HanXRQChr17g0534481 Helianthus annuus HOM05D002865 ORTHO05D003289 4.6e-10 68.2 100 42.0
Nitab4.5_0001730g0040 Nicotiana tabacum HOM05D002865 ORTHO05D003289 4.6e-10 68.2 78 47.4
TAR374G1250 Trochodendron aralioides HOM05D002865 ORTHO05D003289 4.6e-10 68.2 104 38.5
Sopen01g001680 Solanum pennellii HOM05D002865 ORTHO05D003289 6.0e-10 67.8 78 47.4
CAN.G282.13 Capsicum annuum HOM05D002865 ORTHO05D003289 7.8e-10 67.4 73 49.3
Nitab4.5_0003163g0080 Nicotiana tabacum HOM05D002865 ORTHO05D003289 7.8e-10 67.4 78 47.4
Peaxi162Scf00349g00063 Petunia axillaris HOM05D002865 ORTHO05D003289 1.0e-09 67.0 78 47.4
CDE12G0790 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 2.3e-09 65.9 77 40.3
DCAR_006495 Daucus carota HOM05D002865 ORTHO05D003289 3.0e-09 65.5 109 39.4
ECA246G1766 Erigeron canadensis HOM05D002865 ORTHO05D003289 3.0e-09 65.5 103 39.8
Os06g0129200 Oryza sativa ssp. japonica HOM05D002865 ORTHO05D003289 3.9e-09 65.1 72 47.2
PSO384G0833 Papaver somniferum HOM05D002865 ORTHO05D003289 5.1e-09 64.7 79 46.8
PSO135G0011 Papaver somniferum HOM05D002865 ORTHO05D003289 8.7e-09 63.9 79 45.6
Cc08_g16580 Coffea canephora HOM05D002865 ORTHO05D003289 1.1e-08 63.5 81 46.9
BcaB01g01540 Brassica carinata HOM05D002865 ORTHO05D003289 2.5e-08 62.4 74 50.0
BcaC04g21079 Brassica carinata HOM05D002865 ORTHO05D003289 3.3e-08 62.0 77 48.1
C09p35980 Brassica napus HOM05D002865 ORTHO05D003289 3.3e-08 62.0 77 48.1
BolC9t56430H Brassica oleracea HOM05D002865 ORTHO05D003289 3.3e-08 62.0 77 48.1
CARHR255800 Cardamine hirsuta HOM05D002865 ORTHO05D003289 3.3e-08 62.0 72 45.8
Zm00001eb378460 Zea mays HOM05D002865 ORTHO05D003289 5.6e-08 61.2 98 35.7
ATR0757G155 Amborella trichopoda HOM05D002865 ORTHO05D003289 1.6e-07 59.7 76 43.4
Thhalv10028868m.g Eutrema salsugineum HOM05D002865 ORTHO05D003289 1.6e-07 59.7 75 45.3
THA.LOC104815194 Tarenaya hassleriana HOM05D002865 ORTHO05D003289 2.8e-07 58.9 78 42.3
Hma1.2p1_0079F.1_g041773 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 4.8e-07 58.2 73 43.8
Hma1.2p1_0079F.1_g041790 Hydrangea macrophylla HOM05D002865 ORTHO05D003289 4.8e-07 58.2 73 43.8
Nn3g21271 Nelumbo nucifera HOM05D002865 ORTHO05D003289 6.2e-07 57.8 53 54.7
CDE04G0085 Ceratophyllum demersum HOM05D002865 ORTHO05D003289 1.1e-06 57.0 77 37.7
Hund11362 Selenicereus undatus HOM05D002865 ORTHO05D003289 1.4e-06 56.6 56 46.4
Manes.09G045700 Manihot esculenta HOM05D002865 ORTHO05D003289 2.4e-06 55.8 81 42.0
PSO782G0568 Papaver somniferum HOM05D002865 ORTHO05D003289 3.1e-06 55.5 51 47.1
MD14G1048100 Malus domestica HOM05D002865 ORTHO05D003289 4.0e-06 55.1 71 42.3
PSO063G4504 Papaver somniferum HOM05D002865 ORTHO05D003289 4.0e-06 55.1 51 47.1
Actinidia37749 Actinidia chinensis HOM05D002865 ORTHO05D003289 5.3e-06 54.7 74 41.9
MD12G1049200 Malus domestica HOM05D002865 ORTHO05D003289 5.3e-06 54.7 71 43.7
TWI74G0042 Tripterygium wilfordii HOM05D002865 ORTHO05D003289 5.3e-06 54.7 76 40.8
Actinidia03886 Actinidia chinensis HOM05D002865 ORTHO05D003289 6.9e-06 54.3 74 40.5
Actinidia03995 Actinidia chinensis HOM05D002865 ORTHO05D003289 6.9e-06 54.3 74 40.5
RcHm_v2.0_Chr3g0475971 Rosa chinensis HOM05D002865 ORTHO05D003289 9.0e-06 53.9 70 41.4
SEGI_32450 Sequoiadendron giganteum HOM05D002865 ORTHO05D003289 9.0e-06 53.9 76 39.5


User provided reference genes

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