Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24664 Trifolium pratense HOM05D002002 ORTHO05D008797 1.2e-33 146.0 76 100.0
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 2.0e-25 118.6 74 83.8
TPR.G3084 Trifolium pratense HOM05D002002 ORTHO05D012248 2.7e-25 118.2 86 77.9
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 3.5e-25 117.9 86 76.7
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 3.6e-22 107.8 74 79.7
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 4.0e-21 104.4 74 70.3
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 8.9e-21 103.2 74 74.3
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 2.9e-19 98.2 75 74.7
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 2.9e-19 98.2 75 74.7
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 8.3e-19 96.7 74 71.6
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 1.9e-18 95.5 74 68.9
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 3.9e-16 87.8 82 63.4
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 8.6e-16 86.7 74 60.8
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 3.3e-15 84.7 74 58.1
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 8.1e-14 80.1 74 60.8
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 1.1e-13 79.7 74 62.2
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 5.2e-13 77.4 74 54.1
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 1.2e-12 76.3 74 54.1
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 1.5e-12 75.9 74 52.7
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 2.0e-12 75.5 74 56.8
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 2.0e-12 75.5 74 54.1
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 2.6e-12 75.1 72 56.9
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 3.4e-12 74.7 75 58.7
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 9.9e-12 73.2 75 56.0
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 9.9e-12 73.2 74 52.7
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 1.7e-11 72.4 75 57.3
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 2.2e-11 72.0 74 55.4
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 2.9e-11 71.6 74 52.7
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 2.9e-11 71.6 74 52.7
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 2.9e-11 71.6 74 52.7
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 3.8e-11 71.2 74 54.1
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 4.9e-11 70.9 74 55.4
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 4.9e-11 70.9 75 56.0
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 8.4e-11 70.1 74 55.4
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 8.4e-11 70.1 74 51.4
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 1.4e-10 69.3 74 51.4
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 2.4e-10 68.6 74 50.0
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 4.1e-10 67.8 74 50.0
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 7.1e-10 67.0 70 54.3
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 9.2e-10 66.6 75 48.0
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 1.2e-09 66.2 74 52.7
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 2.1e-09 65.5 74 48.6
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 2.1e-09 65.5 74 50.0
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 2.7e-09 65.1 74 44.6
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 2.7e-09 65.1 74 50.0
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 6.0e-09 63.9 74 44.6
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 7.8e-09 63.5 74 50.0
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 1.3e-08 62.8 38 78.9
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 1.7e-08 62.4 74 50.0
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 3.0e-08 61.6 76 50.0
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 3.0e-08 61.6 74 41.9
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.1e-07 59.7 74 44.6
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 1.5e-07 59.3 75 52.0
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 1.5e-07 59.3 65 53.8
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.9e-07 58.9 74 44.6
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 2.5e-07 58.5 76 47.4
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 4.3e-07 57.8 74 41.9
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 7.3e-07 57.0 75 49.3
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 7.3e-07 57.0 76 47.4
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 9.6e-07 56.6 74 44.6
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 9.6e-07 56.6 74 44.6
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 1.6e-06 55.8 74 43.2
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 2.1e-06 55.5 71 46.5
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 6.2e-06 53.9 74 40.5
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 8.1e-06 53.5 76 47.4


User provided reference genes

Program Settings