Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 3.8e-65 251.5 130 100.0
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 7.4e-53 210.7 108 99.1
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 5.3e-51 204.5 108 96.3
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 5.5e-48 194.5 108 90.7
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 4.6e-47 191.4 108 89.8
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.7e-45 184.5 108 86.1
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 3.2e-40 168.7 108 77.8
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 7.9e-39 164.1 108 76.9
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 6.7e-38 161.0 108 74.1
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 8.8e-38 160.6 121 67.8
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.3e-36 156.8 108 73.1
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.3e-36 156.8 108 75.9
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 5.9e-34 147.9 112 65.2
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.1e-32 143.7 115 62.6
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.1e-32 143.7 119 61.3
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 2.1e-31 139.4 108 63.9
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 2.7e-31 139.0 117 60.7
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.6e-31 138.7 108 63.9
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.0e-30 137.1 108 62.0
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 1.4e-30 136.7 108 63.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 3.0e-30 135.6 108 62.0
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 6.7e-30 134.4 108 60.2
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 8.8e-30 134.0 107 66.4
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.5e-29 133.3 108 63.0
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.0e-29 132.9 108 61.1
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 2.0e-29 132.9 108 60.2
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.3e-29 132.1 111 59.5
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 3.3e-29 132.1 108 61.1
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 4.4e-29 131.7 108 61.1
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 4.4e-29 131.7 108 60.2
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 4.4e-29 131.7 108 60.2
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 9.7e-29 130.6 108 61.1
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 9.7e-29 130.6 108 58.3
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.3e-28 130.2 108 60.2
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 1.3e-28 130.2 108 58.3
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 1.7e-28 129.8 108 61.1
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.7e-28 129.8 108 61.1
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.7e-28 129.8 108 61.1
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.2e-28 129.4 110 59.1
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 2.2e-28 129.4 108 58.3
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.2e-28 129.4 108 57.4
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.8e-28 129.0 127 54.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 3.7e-28 128.6 108 60.2
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 4.8e-28 128.3 108 58.3
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 6.3e-28 127.9 108 60.2
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 6.3e-28 127.9 108 58.3
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 6.3e-28 127.9 108 62.0
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 8.2e-28 127.5 108 55.6
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.4e-27 126.7 108 58.3
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 1.4e-27 126.7 108 59.3
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 1.4e-27 126.7 108 59.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.4e-27 126.7 108 57.4
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.4e-27 126.7 108 57.4
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.8e-27 126.3 108 59.3
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.8e-27 126.3 108 56.5
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 2.4e-27 125.9 108 57.4
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 2.4e-27 125.9 108 58.3
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 2.4e-27 125.9 108 58.3
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 3.1e-27 125.6 108 59.3
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.1e-27 125.2 112 54.5
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 5.3e-27 124.8 108 60.2
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 7.0e-27 124.4 110 56.4
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 7.0e-27 124.4 110 56.4
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 9.1e-27 124.0 108 58.3
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 9.1e-27 124.0 108 58.3
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 9.1e-27 124.0 111 55.0
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 9.1e-27 124.0 108 57.4
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 9.1e-27 124.0 108 57.4
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 9.1e-27 124.0 111 55.0
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 9.1e-27 124.0 108 59.3
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.2e-26 123.6 108 61.1
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.2e-26 123.6 108 58.3
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 1.6e-26 123.2 111 54.1
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.0e-26 122.9 108 57.4
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.5e-26 122.1 108 56.5
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 3.5e-26 122.1 108 56.5
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 4.5e-26 121.7 108 56.5
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 5.9e-26 121.3 108 55.6
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 5.9e-26 121.3 108 54.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 5.9e-26 121.3 108 54.6
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 7.7e-26 120.9 108 56.5
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.0e-25 120.6 109 57.8
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.0e-25 120.6 109 56.9
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 1.3e-25 120.2 109 56.9
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.2e-25 119.4 108 53.7
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.2e-25 119.4 108 57.4
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 3.8e-25 118.6 109 56.9
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.8e-25 118.6 108 54.6
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 6.5e-25 117.9 108 52.8
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 6.5e-25 117.9 108 53.7
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 6.5e-25 117.9 108 56.5
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 8.5e-25 117.5 108 53.7
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 1.1e-24 117.1 108 54.6
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.1e-24 117.1 111 50.5
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 1.5e-24 116.7 109 55.0
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.5e-24 116.7 104 56.7
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.9e-24 116.3 109 56.9
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 3.2e-24 115.5 107 53.3
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 3.2e-24 115.5 123 50.4
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.2e-24 115.5 108 53.7
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 4.2e-24 115.2 109 55.0
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 4.2e-24 115.2 108 51.9
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 5.5e-24 114.8 109 55.0
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 5.5e-24 114.8 109 53.2
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 1.2e-23 113.6 109 51.4
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 2.1e-23 112.8 123 50.4
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 6.1e-23 111.3 107 52.3
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 8.0e-23 110.9 112 50.9
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.4e-22 110.2 105 53.3
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 3.0e-22 109.0 108 50.9
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 5.2e-22 108.2 96 58.3
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 6.8e-22 107.8 104 49.0
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 8.8e-22 107.5 108 47.2
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.5e-21 106.7 97 58.8
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 2.0e-21 106.3 87 63.2
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 3.4e-21 105.5 108 47.2
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.4e-21 105.5 108 50.0
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 9.8e-21 104.0 100 56.0
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 9.8e-21 104.0 90 58.9
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.7e-20 103.2 90 60.0
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 3.7e-20 102.1 105 50.5
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.7e-20 102.1 109 47.7
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 6.3e-20 101.3 92 58.7
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 6.3e-20 101.3 94 57.4
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 2.4e-19 99.4 91 57.1
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 3.1e-19 99.0 103 53.4
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 4.1e-19 98.6 108 48.1
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.1e-19 98.6 85 58.8
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.1e-19 98.6 85 58.8
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.6e-18 96.7 86 57.0
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 4.5e-18 95.1 86 55.8
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 7.7e-18 94.4 94 54.3
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.0e-17 94.0 86 59.3
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.0e-17 94.0 86 59.3
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 1.0e-17 94.0 108 48.1
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.3e-17 92.8 106 38.7
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 3.8e-17 92.0 108 43.5
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.8e-17 92.0 86 53.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 6.5e-17 91.3 87 54.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 6.5e-17 91.3 97 47.4
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 8.6e-17 90.9 104 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 8.6e-17 90.9 104 48.1
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.5e-16 90.1 87 54.0
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 2.5e-16 89.4 87 52.9
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 3.3e-16 89.0 95 50.5
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 7.2e-16 87.8 87 52.9
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 3.0e-14 82.4 112 45.5
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.5e-13 80.1 71 50.7
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 3.4e-13 79.0 88 54.5
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 2.2e-12 76.3 109 39.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 3.1e-11 72.4 66 54.5
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 3.5e-10 68.9 109 37.6
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 5.9e-10 68.2 87 46.0
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 7.8e-10 67.8 74 47.3
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 7.8e-10 67.8 94 39.4
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 5.0e-09 65.1 72 44.4
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 5.0e-09 65.1 72 44.4
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.2e-07 60.5 57 50.9


User provided reference genes

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