Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24603 Trifolium pratense HOM05D000041 ORTHO05D015368 1.1e-56 223.0 112 100.0
TPR.G23886 Trifolium pratense HOM05D000041 ORTHO05D000061 5.1e-41 171.0 110 80.0
Medtr4g095042 Medicago truncatula HOM05D000041 ORTHO05D000061 9.7e-40 166.8 112 76.8
TPR.G23850 Trifolium pratense HOM05D000041 ORTHO05D000061 4.2e-35 151.4 113 70.8
Medtr4g095032 Medicago truncatula HOM05D000041 ORTHO05D000061 2.7e-34 148.7 112 70.5
Medtr4g095018 Medicago truncatula HOM05D000041 ORTHO05D000061 7.9e-34 147.1 110 73.6
Medtr4g095022 Medicago truncatula HOM05D000041 ORTHO05D000061 1.4e-33 146.4 114 71.9
Psat4g084080 Pisum sativum HOM05D000041 ORTHO05D000061 2.1e-26 122.5 113 61.1
Medtr4g095012 Medicago truncatula HOM05D000041 ORTHO05D000061 1.3e-23 113.2 114 63.2
Lj4g0003677 Lotus japonicus HOM05D000041 ORTHO05D000061 1.3e-20 103.2 112 52.7
Lj4g0026926 Lotus japonicus HOM05D000041 ORTHO05D000061 1.3e-20 103.2 112 52.7
Glyma.17G166200 Glycine max HOM05D000041 ORTHO05D000061 1.7e-20 102.8 112 52.7
Glyma.05G100000 Glycine max HOM05D000041 ORTHO05D000061 2.9e-20 102.1 110 54.5
Phvul.003G239400 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 3.8e-20 101.7 109 54.1
Phvul.003G239500 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 1.2e-18 96.7 109 53.2
VMungo0251G3770 Vigna mungo HOM05D000041 ORTHO05D000061 1.0e-17 93.6 109 51.4
Phvul.003G239300 Phaseolus vulgaris HOM05D000041 ORTHO05D000061 1.4e-17 93.2 101 55.4
VMungo0251G1395 Vigna mungo HOM05D000041 ORTHO05D000061 9.7e-16 87.0 109 51.4
Lalb_Chr05g0226151 Lupinus albus HOM05D000041 ORTHO05D000061 2.7e-13 79.0 112 50.9
Haze_15341 Corylus avellana HOM05D000041 ORTHO05D000061 5.9e-13 77.8 112 46.4
MD02G1018900 Malus domestica HOM05D000041 ORTHO05D000061 1.0e-12 77.0 104 47.1
Duzib147G0517 Durio zibethinus HOM05D000041 ORTHO05D000061 2.2e-12 75.9 109 40.4
RcHm_v2.0_Chr2g0106801 Rosa chinensis HOM05D000041 ORTHO05D000061 2.2e-12 75.9 105 43.8
Glyma.05G099900 Glycine max HOM05D000041 ORTHO05D000061 2.9e-12 75.5 95 49.5
Gohir.D12G071600 Gossypium hirsutum HOM05D000041 ORTHO05D000061 3.8e-12 75.1 109 44.0
Gorai.008G078800 Gossypium raimondii HOM05D000041 ORTHO05D000061 5.0e-12 74.7 109 44.0
MD15G1289500 Malus domestica HOM05D000041 ORTHO05D000061 5.0e-12 74.7 104 47.1
Prupe.6G227800 Prunus persica HOM05D000041 ORTHO05D000061 5.0e-12 74.7 104 43.3
Prupe.6G228100 Prunus persica HOM05D000041 ORTHO05D000061 5.0e-12 74.7 104 43.3
RcHm_v2.0_Chr2g0106751 Rosa chinensis HOM05D000041 ORTHO05D000061 5.0e-12 74.7 105 43.8
RcHm_v2.0_Chr2g0106771 Rosa chinensis HOM05D000041 ORTHO05D000061 5.0e-12 74.7 105 43.8
Gohir.A12G073900 Gossypium hirsutum HOM05D000041 ORTHO05D000061 6.5e-12 74.3 109 42.2
Sabra05G0115100 Salix brachista HOM05D000041 ORTHO05D000061 1.9e-11 72.8 102 42.2
Thecc.01G064200 Theobroma cacao HOM05D000041 ORTHO05D000061 1.9e-11 72.8 109 40.4
Potri.005G143200 Populus trichocarpa HOM05D000041 ORTHO05D000061 3.2e-11 72.0 102 42.2
CSS0025802 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 7.2e-11 70.9 107 42.1
CSS0037805 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 7.2e-11 70.9 108 47.2
CiPaw.01G012100 Carya illinoinensis HOM05D000041 ORTHO05D000061 9.4e-11 70.5 114 43.9
CiPaw.01G012200 Carya illinoinensis HOM05D000041 ORTHO05D000061 2.1e-10 69.3 111 43.2
QL08p061649 Quercus lobata HOM05D000041 ORTHO05D000061 2.1e-10 69.3 104 46.2
TWI53G1680 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 2.1e-10 69.3 109 41.3
GSVIVG01000209001 Vitis vinifera HOM05D000041 ORTHO05D008933 2.1e-10 69.3 104 44.2
GSVIVG01000210001 Vitis vinifera HOM05D000041 ORTHO05D000061 2.7e-10 68.9 111 42.3
Sabra05G0114300 Salix brachista HOM05D000041 ORTHO05D000061 3.6e-10 68.6 102 40.2
Dinv30041 Davidia involucrata HOM05D000041 ORTHO05D000061 1.0e-09 67.0 106 41.5
Lalb_Chr09g0333971 Lupinus albus HOM05D000041 ORTHO05D000061 1.4e-09 66.6 111 45.9
SalBow5G3765 Salvia bowleyana HOM05D000041 ORTHO05D000061 1.4e-09 66.6 103 40.8
COL.COLO4_11494 Corchorus olitorius HOM05D000041 ORTHO05D000061 2.3e-09 65.9 87 46.0
Ciclev10024896m.g Citrus clementina HOM05D000041 ORTHO05D000061 3.0e-09 65.5 103 39.8
TAR375G0999 Trochodendron aralioides HOM05D000041 ORTHO05D000061 3.0e-09 65.5 108 42.6
GSVIVG01000200001 Vitis vinifera HOM05D000041 ORTHO05D000145 3.0e-09 65.5 108 39.8
Actinidia12013 Actinidia chinensis HOM05D000041 ORTHO05D000061 4.0e-09 65.1 112 45.5
CSS0047132 Camellia sinensis var. sinensis HOM05D000041 ORTHO05D000061 5.2e-09 64.7 114 44.7
FAN28G0325 Fragaria x ananassa HOM05D000041 ORTHO05D000061 5.2e-09 64.7 104 46.2
Ciclev10024905m.g Citrus clementina HOM05D000041 ORTHO05D000061 6.8e-09 64.3 103 39.8
Manes.12G114600 Manihot esculenta HOM05D000041 ORTHO05D000061 6.8e-09 64.3 105 40.0
Manes.12G114700 Manihot esculenta HOM05D000041 ORTHO05D000061 6.8e-09 64.3 107 38.3
Sabra05G0114100 Salix brachista HOM05D000041 ORTHO05D000061 6.8e-09 64.3 100 41.0
QL08p061644 Quercus lobata HOM05D000041 ORTHO05D000061 8.8e-09 63.9 99 40.4
RcHm_v2.0_Chr2g0106811 Rosa chinensis HOM05D000041 ORTHO05D000061 8.8e-09 63.9 106 43.4
MSTRG.23710 Avicennia marina HOM05D000041 ORTHO05D000061 1.2e-08 63.5 112 44.6
RcHm_v2.0_Chr2g0106821 Rosa chinensis HOM05D000041 ORTHO05D000061 1.5e-08 63.2 106 45.3
Dinv35246 Davidia involucrata HOM05D000041 ORTHO05D000061 3.4e-08 62.0 98 39.8
Hma1.2p1_0239F.1_g099980 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 3.4e-08 62.0 98 39.8
Prupe.6G228300 Prunus persica HOM05D000041 ORTHO05D000061 4.4e-08 61.6 104 42.3
RcHm_v2.0_Chr1g0324441 Rosa chinensis HOM05D000041 ORTHO05D000061 4.4e-08 61.6 104 42.3
FAN26G1303 Fragaria x ananassa HOM05D000041 ORTHO05D000061 5.7e-08 61.2 103 45.6
RcHm_v2.0_Chr1g0324321 Rosa chinensis HOM05D000041 ORTHO05D000061 5.7e-08 61.2 104 42.3
Ciclev10024841m.g Citrus clementina HOM05D000041 ORTHO05D000061 7.5e-08 60.8 103 37.9
Cc07_g18870 Coffea canephora HOM05D000041 ORTHO05D000061 7.5e-08 60.8 108 39.8
FvH4_1g16860 Fragaria vesca HOM05D000041 ORTHO05D000061 7.5e-08 60.8 104 45.2
FAN19G1414 Fragaria x ananassa HOM05D000041 ORTHO05D000061 7.5e-08 60.8 104 45.2
Sc19g0002960 Simmondsia chinensis HOM05D000041 ORTHO05D000061 7.5e-08 60.8 102 42.2
GSVIVG01000211001 Vitis vinifera HOM05D000041 ORTHO05D000061 1.3e-07 60.1 98 38.8
Haze_15340 Corylus avellana HOM05D000041 ORTHO05D000061 2.8e-07 58.9 99 40.4
Nn6g33313 Nelumbo nucifera HOM05D000041 ORTHO05D000061 2.8e-07 58.9 105 38.1
Migut.H00389 Erythranthe guttata HOM05D000041 ORTHO05D000061 3.7e-07 58.5 104 44.2
FvH4_1g16861 Fragaria vesca HOM05D000041 ORTHO05D000061 4.8e-07 58.2 106 44.3
FAN26G3016 Fragaria x ananassa HOM05D000041 ORTHO05D000061 4.8e-07 58.2 106 44.3
CiPaw.01G028700 Carya illinoinensis HOM05D000041 ORTHO05D015368 8.3e-07 57.4 99 41.4
Sabra05G0107400 Salix brachista HOM05D000041 ORTHO05D000061 8.3e-07 57.4 100 38.0
CiPaw.01G009900 Carya illinoinensis HOM05D000041 ORTHO05D000061 1.1e-06 57.0 98 34.7
CiPaw.01G010400 Carya illinoinensis HOM05D000041 ORTHO05D000061 1.1e-06 57.0 98 34.7
QL06p039981 Quercus lobata HOM05D000041 ORTHO05D000061 1.1e-06 57.0 109 35.8
TWI39G0046 Tripterygium wilfordii HOM05D000041 ORTHO05D000061 1.1e-06 57.0 100 39.0
CiPaw.01G010300 Carya illinoinensis HOM05D000041 ORTHO05D000061 1.4e-06 56.6 97 35.1
Eucgr.I00779 Eucalyptus grandis HOM05D000041 ORTHO05D000061 1.4e-06 56.6 110 36.4
Actinidia31836 Actinidia chinensis HOM05D000041 ORTHO05D000061 1.8e-06 56.2 111 36.9
CARHR248370 Cardamine hirsuta HOM05D000041 ORTHO05D008933 1.8e-06 56.2 114 36.8
Actinidia16460 Actinidia chinensis HOM05D000041 ORTHO05D000061 2.4e-06 55.8 112 39.3
QL04p054422 Quercus lobata HOM05D000041 ORTHO05D008933 3.1e-06 55.5 114 34.2
Eucgr.I00759 Eucalyptus grandis HOM05D000041 ORTHO05D000061 4.1e-06 55.1 92 38.0
Hma1.2p1_0274F.1_g110200 Hydrangea macrophylla HOM05D000041 ORTHO05D000061 4.1e-06 55.1 108 33.3
Rhsim09G0200300 Rhododendron simsii HOM05D000041 ORTHO05D000061 4.1e-06 55.1 105 37.1
Eucgr.I00756 Eucalyptus grandis HOM05D000041 ORTHO05D000061 5.4e-06 54.7 109 35.8
Eucgr.I00780 Eucalyptus grandis HOM05D000041 ORTHO05D000061 5.4e-06 54.7 107 37.4
MBI04_g39568_MAGBIO Magnolia biondii HOM05D000041 ORTHO05D000061 5.4e-06 54.7 86 39.5
Manes.13G117700 Manihot esculenta HOM05D000041 ORTHO05D000061 5.4e-06 54.7 105 36.2
Nn1g01619 Nelumbo nucifera HOM05D000041 ORTHO05D000061 5.4e-06 54.7 105 33.3
Potri.005G143700 Populus trichocarpa HOM05D000041 ORTHO05D000061 5.4e-06 54.7 110 34.5
Sabra17G0047700 Salix brachista HOM05D000041 ORTHO05D000061 5.4e-06 54.7 100 38.0
TAR374G0738 Trochodendron aralioides HOM05D000041 ORTHO05D008933 5.4e-06 54.7 104 34.6
PGR004G1070 Punica granatum HOM05D000041 ORTHO05D000061 7.0e-06 54.3 89 41.6
PGR142G1062 Punica granatum HOM05D000041 ORTHO05D000061 7.0e-06 54.3 110 40.9
vmacro09818 Vaccinium macrocarpon HOM05D000041 ORTHO05D000061 7.0e-06 54.3 104 37.5
CiPaw.01G011600 Carya illinoinensis HOM05D000041 ORTHO05D000061 9.1e-06 53.9 106 38.7
FvH4_7g30170 Fragaria vesca HOM05D000041 ORTHO05D000061 9.1e-06 53.9 97 36.1
FAN01G2122 Fragaria x ananassa HOM05D000041 ORTHO05D000061 9.1e-06 53.9 97 36.1
FAN06G3147 Fragaria x ananassa HOM05D000041 ORTHO05D000061 9.1e-06 53.9 97 36.1
FAN10G0274 Fragaria x ananassa HOM05D000041 ORTHO05D000061 9.1e-06 53.9 97 36.1
FAN10G0550 Fragaria x ananassa HOM05D000041 ORTHO05D000061 9.1e-06 53.9 97 36.1
Gohir.A11G219633 Gossypium hirsutum HOM05D000041 ORTHO05D000061 9.1e-06 53.9 110 36.4
Lj1C1004T7 Lonicera japonica HOM05D000041 ORTHO05D000061 9.1e-06 53.9 103 35.0
Lj7C84T3 Lonicera japonica HOM05D000041 ORTHO05D000061 9.1e-06 53.9 107 37.4


User provided reference genes

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