Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 0.0e+00 1686.0 1008 100.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 3.4e-59 234.6 545 37.1
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 4.3e-54 217.6 531 34.5
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 7.3e-54 216.9 199 54.8
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.6e-53 215.7 195 56.9
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-52 213.0 236 51.7
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 4.5e-51 207.6 547 33.5
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 3.5e-48 198.0 544 39.2
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.6e-45 189.1 538 34.0
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 5.3e-44 184.1 369 39.0
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.2e-43 183.0 194 48.5
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.5e-43 182.6 170 52.4
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.2e-40 172.9 194 50.5
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.2e-33 148.3 152 52.6
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 3.2e-33 148.3 152 52.6
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.1e-28 133.3 187 38.0
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 1.2e-27 129.8 187 37.4
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 6.9e-20 104.0 165 35.8
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 5.9e-19 100.9 188 36.2
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 6.5e-18 97.4 166 34.9
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.1e-17 96.7 151 38.4
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 4.2e-17 94.7 162 32.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.5e-17 94.4 171 35.7
TPR.G24496 Trifolium pratense HOM05D006236 ORTHO05D003486 5.5e-17 94.4 408 32.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 7.2e-17 94.0 168 32.7
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 1.2e-16 93.2 179 31.8
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 4.6e-16 91.3 162 29.6
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 7.9e-16 90.5 168 31.0
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 1.8e-15 89.4 171 35.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.1e-14 86.7 584 24.8
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 4.4e-14 84.7 108 38.0
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 5.7e-14 84.3 106 39.6
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 7.4e-14 84.0 193 30.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.3e-13 83.2 208 27.9
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.7e-13 82.8 102 37.3
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.7e-13 82.8 189 27.5
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 1.7e-13 82.8 169 30.8
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.2e-13 82.4 110 40.0
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 4.8e-13 81.3 183 33.3
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 6.3e-13 80.9 107 38.3
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 6.3e-13 80.9 118 35.6
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 6.3e-13 80.9 110 37.3
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 8.2e-13 80.5 133 31.6
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 8.2e-13 80.5 229 29.3
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 1.1e-12 80.1 137 34.3
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.4e-12 79.7 146 34.2
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.4e-12 79.7 109 35.8
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.8e-12 79.3 183 32.2
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.8e-12 79.3 164 29.3
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.8e-12 79.3 229 30.6
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 2.4e-12 79.0 119 34.5
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 2.4e-12 79.0 104 38.5
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 5.3e-12 77.8 106 37.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 9.1e-12 77.0 163 31.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.1e-12 77.0 151 31.1
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 9.1e-12 77.0 174 27.0
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.2e-11 76.6 106 37.7
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.5e-11 76.3 168 32.1
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.5e-11 76.3 154 30.5
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.0e-11 75.9 180 30.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.0e-11 75.9 239 28.0
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 2.6e-11 75.5 168 29.8
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 4.5e-11 74.7 153 33.3
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 5.9e-11 74.3 166 31.9
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.0e-10 73.6 161 31.1
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.0e-10 73.6 182 29.7
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.3e-10 73.2 194 27.8
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.7e-10 72.8 181 28.2
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.7e-10 72.8 112 35.7
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.9e-10 72.0 153 30.7
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.9e-10 72.0 140 32.1
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.8e-10 71.6 95 38.9
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 5.0e-10 71.2 164 31.1
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 5.0e-10 71.2 156 30.1
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 5.0e-10 71.2 174 31.6
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 6.5e-10 70.9 145 31.7
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 6.5e-10 70.9 145 31.7
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 6.5e-10 70.9 97 30.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 6.5e-10 70.9 97 30.9
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 1.4e-09 69.7 145 31.0
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.4e-09 69.7 158 33.5
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 1.4e-09 69.7 175 30.3
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.4e-09 69.7 131 29.0
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.4e-09 69.7 132 28.8
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.9e-09 69.3 139 33.8
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.9e-09 69.3 409 25.4
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 3.2e-09 68.6 174 30.5
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 3.2e-09 68.6 290 25.9
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.2e-09 68.6 158 31.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.2e-09 68.2 166 31.3
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 4.2e-09 68.2 218 27.1
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.5e-09 67.8 184 27.7
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 5.5e-09 67.8 156 29.5
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 5.5e-09 67.8 156 29.5
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 5.5e-09 67.8 156 30.1
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 5.5e-09 67.8 52 50.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 5.5e-09 67.8 194 27.3
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.5e-09 67.8 231 27.3
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 5.5e-09 67.8 222 25.7
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.2e-09 67.4 132 34.8
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.2e-09 67.4 145 30.3
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 7.2e-09 67.4 188 27.1
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 7.2e-09 67.4 156 29.5
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 7.2e-09 67.4 156 29.5
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 9.4e-09 67.0 98 34.7
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-08 66.6 125 33.6
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.6e-08 66.2 168 33.3
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.6e-08 66.2 105 33.3
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.6e-08 66.2 103 35.9
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.1e-08 65.9 174 29.9
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.1e-08 65.9 118 28.8
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.1e-08 65.9 118 28.8
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.1e-08 65.9 113 32.7
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 2.7e-08 65.5 111 29.7
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.7e-08 65.5 139 33.1
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.7e-08 65.5 110 32.7
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 2.7e-08 65.5 158 32.9
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.7e-08 64.7 157 28.7
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 4.7e-08 64.7 142 33.1
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 6.1e-08 64.3 168 31.0
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 7.9e-08 63.9 120 33.3
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.9e-08 63.9 169 32.0
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.0e-07 63.5 177 28.8
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.4e-07 63.2 145 30.3
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.4e-07 63.2 221 28.1
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.4e-07 63.2 171 29.2
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.8e-07 62.8 126 27.0
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.8e-07 62.8 110 31.8
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.8e-07 62.8 106 32.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 2.3e-07 62.4 167 30.5
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.3e-07 62.4 167 29.9
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 2.3e-07 62.4 175 29.1
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-07 62.4 110 32.7
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.3e-07 62.4 182 27.5
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 2.3e-07 62.4 104 33.7
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 3.9e-07 61.6 97 35.1
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 5.2e-07 61.2 111 32.4
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 5.2e-07 61.2 142 28.2
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.2e-07 61.2 140 27.1
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 6.7e-07 60.8 160 30.0
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 6.7e-07 60.8 172 29.7
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.8e-07 60.5 125 29.6
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.1e-06 60.1 162 29.0
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 1.5e-06 59.7 100 30.0
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 2.0e-06 59.3 178 25.3
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.0e-06 59.3 97 34.0
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 2.0e-06 59.3 97 34.0
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 2.6e-06 58.9 105 35.2
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.3e-06 58.5 138 30.4
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 3.3e-06 58.5 58 41.4
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 3.3e-06 58.5 117 32.5
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 5.7e-06 57.8 103 34.0


User provided reference genes

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