Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24499 Trifolium pratense HOM05D001656 ORTHO05D003489 1.1e-145 520.0 264 100.0
Glyma.17G191900 Glycine max HOM05D001656 ORTHO05D003489 2.0e-67 260.0 224 63.8
Lalb_Chr11g0064671 Lupinus albus HOM05D001656 ORTHO05D003489 1.3e-66 257.3 221 62.9
Medtr1g007420 Medicago truncatula HOM05D001656 ORTHO05D003489 2.9e-66 256.1 206 67.5
VMungo0647G0957 Vigna mungo HOM05D001656 ORTHO05D003489 7.0e-65 251.5 210 65.2
Phvul.001G063050 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 8.6e-63 244.6 234 60.3
Glyma.06G090300 Glycine max HOM05D001656 ORTHO05D003489 4.4e-59 232.3 249 52.6
Lalb_Chr23g0269821 Lupinus albus HOM05D001656 ORTHO05D003489 5.8e-59 231.9 221 57.9
arahy.Tifrunner.gnm1.ann1.MCUW0T Arachis hypogaea HOM05D001656 ORTHO05D003489 4.9e-58 228.8 288 48.3
Glyma.04G088300 Glycine max HOM05D001656 ORTHO05D003489 8.3e-58 228.0 252 51.6
Lj1g0003271 Lotus japonicus HOM05D001656 ORTHO05D003489 3.2e-57 226.1 206 59.2
VMungo1309G1010 Vigna mungo HOM05D001656 ORTHO05D003489 3.2e-57 226.1 227 54.6
arahy.Tifrunner.gnm1.ann1.EW8P9I Arachis hypogaea HOM05D001656 ORTHO05D003489 5.4e-57 225.3 292 47.6
TPR.G12394 Trifolium pratense HOM05D001656 ORTHO05D003489 2.5e-54 216.5 202 59.9
CANSAT25G1280 Cannabis sativa HOM05D001656 ORTHO05D003489 7.3e-54 214.9 213 54.5
Psat2g123240 Pisum sativum HOM05D001656 ORTHO05D003489 1.6e-53 213.8 191 59.7
MD08G1211000 Malus domestica HOM05D001656 ORTHO05D003489 8.1e-53 211.5 225 51.6
Prupe.1G542900 Prunus persica HOM05D001656 ORTHO05D003489 8.1e-53 211.5 227 52.0
TWI36G0018 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.4e-52 210.7 227 52.4
MD15G1398300 Malus domestica HOM05D001656 ORTHO05D003489 2.3e-52 209.9 225 52.0
Atru.chr13.918 Acer truncatum HOM05D001656 ORTHO05D003489 5.2e-52 208.8 225 54.7
CiPaw.15G153400 Carya illinoinensis HOM05D001656 ORTHO05D003489 6.8e-52 208.4 214 53.3
QL12p040546 Quercus lobata HOM05D001656 ORTHO05D003489 6.8e-52 208.4 207 52.7
vmacro14265 Vaccinium macrocarpon HOM05D001656 ORTHO05D003489 8.9e-52 208.0 205 54.6
Cfa020712 Carpinus fangiana HOM05D001656 ORTHO05D003489 3.4e-51 206.1 203 53.7
Cc04_g16130 Coffea canephora HOM05D001656 ORTHO05D003489 5.8e-51 205.3 210 54.8
Phvul.009G113900 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 5.8e-51 205.3 227 51.1
Actinidia11666 Actinidia chinensis HOM05D001656 ORTHO05D003489 7.6e-51 204.9 194 56.2
Nitab4.5_0002875g0070 Nicotiana tabacum HOM05D001656 ORTHO05D003489 9.9e-51 204.5 205 55.1
TWI56G0670 Tripterygium wilfordii HOM05D001656 ORTHO05D003489 1.3e-50 204.1 227 51.1
TAR625G1477 Trochodendron aralioides HOM05D001656 ORTHO05D003489 1.3e-50 204.1 211 52.1
PGR031G1306 Punica granatum HOM05D001656 ORTHO05D003489 1.7e-50 203.8 208 53.4
GSVIVG01029697001 Vitis vinifera HOM05D001656 ORTHO05D003489 2.9e-50 203.0 190 57.4
Actinidia23982 Actinidia chinensis HOM05D001656 ORTHO05D003489 6.4e-50 201.8 194 55.7
HanXRQChr11g0344231 Helianthus annuus HOM05D001656 ORTHO05D003489 8.4e-50 201.4 211 53.1
Eucgr.F02184 Eucalyptus grandis HOM05D001656 ORTHO05D003489 1.1e-49 201.1 227 49.3
Dinv18177 Davidia involucrata HOM05D001656 ORTHO05D003489 1.9e-49 200.3 205 53.2
Nn5g28753 Nelumbo nucifera HOM05D001656 ORTHO05D003489 1.9e-49 200.3 215 51.6
Gorai.010G030400 Gossypium raimondii HOM05D001656 ORTHO05D003489 2.4e-49 199.9 227 49.8
MBI17_g13522_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D003489 3.2e-49 199.5 211 52.1
ClCG08G009120 Citrullus lanatus HOM05D001656 ORTHO05D003489 4.1e-49 199.1 225 51.6
THA.LOC104816780 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 4.1e-49 199.1 225 50.7
Sed0023766 Sechium edule HOM05D001656 ORTHO05D003489 5.4e-49 198.7 190 56.8
MSTRG.4393 Avicennia marina HOM05D001656 ORTHO05D003489 9.2e-49 198.0 210 51.9
Gohir.A06G028500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 9.2e-49 198.0 227 49.8
AT1G58350 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 1.2e-48 197.6 213 51.2
Gohir.D06G027300 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.2e-48 197.6 227 49.3
Medtr3g110690 Medicago truncatula HOM05D001656 ORTHO05D003489 1.2e-48 197.6 191 59.7
CSS0003613 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 1.6e-48 197.2 210 52.4
MELO3C026510.2 Cucumis melo HOM05D001656 ORTHO05D003489 1.6e-48 197.2 225 51.1
CsaV3_6G036010 Cucumis sativus L. HOM05D001656 ORTHO05D003489 1.6e-48 197.2 188 57.4
Solyc03g113640.4 Solanum lycopersicum HOM05D001656 ORTHO05D003489 2.1e-48 196.8 192 54.7
PGSC0003DMG400024574 Solanum tuberosum HOM05D001656 ORTHO05D003489 2.7e-48 196.4 205 53.7
THA.LOC104820058 Tarenaya hassleriana HOM05D001656 ORTHO05D003489 2.7e-48 196.4 218 50.5
CAN.G853.38 Capsicum annuum HOM05D001656 ORTHO05D003489 3.5e-48 196.1 205 53.7
RcHm_v2.0_Chr7g0232361 Rosa chinensis HOM05D001656 ORTHO05D003489 3.5e-48 196.1 208 54.8
Ciclev10000310m.g Citrus clementina HOM05D001656 ORTHO05D003489 4.6e-48 195.7 187 59.9
Rhsim01G0193900 Rhododendron simsii HOM05D001656 ORTHO05D003489 4.6e-48 195.7 220 50.0
Sopen03g032680 Solanum pennellii HOM05D001656 ORTHO05D003489 1.0e-47 194.5 205 52.7
PSO675G3868 Papaver somniferum HOM05D001656 ORTHO05D003489 1.3e-47 194.1 192 53.6
ECA248G3915 Erigeron canadensis HOM05D001656 ORTHO05D003489 1.7e-47 193.7 203 53.2
Thhalv10023308m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 1.7e-47 193.7 206 50.5
Manes.03G069648 Manihot esculenta HOM05D001656 ORTHO05D003489 1.7e-47 193.7 218 51.4
PSO541G1368 Papaver somniferum HOM05D001656 ORTHO05D003489 1.7e-47 193.7 192 53.1
Sc13g0010550 Simmondsia chinensis HOM05D001656 ORTHO05D003489 1.7e-47 193.7 206 51.0
SGA_v2.0_scaffold114G31863 Striga asiatica HOM05D001656 ORTHO05D003489 1.7e-47 193.7 205 49.8
Atru.chr6.982 Acer truncatum HOM05D001656 ORTHO05D003489 2.3e-47 193.4 185 57.3
Oeu041590.1 Olea europaea HOM05D001656 ORTHO05D003489 2.3e-47 193.4 190 53.7
Aqoxy6G00378 Aquilegia oxysepala HOM05D001656 ORTHO05D003489 3.0e-47 193.0 203 51.2
TAR250G0004 Trochodendron aralioides HOM05D001656 ORTHO05D003489 3.0e-47 193.0 184 57.1
VMungo0540G0892 Vigna mungo HOM05D001656 ORTHO05D003489 3.0e-47 193.0 214 50.9
AL2G17870 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 3.9e-47 192.6 213 50.2
FAN04G0452 Fragaria x ananassa HOM05D001656 ORTHO05D003489 5.1e-47 192.2 200 54.5
Glyma.08G077100 Glycine max HOM05D001656 ORTHO05D003489 5.1e-47 192.2 217 50.7
Peaxi162Scf00017g02238 Petunia axillaris HOM05D001656 ORTHO05D003489 5.1e-47 192.2 205 52.7
Cpa.g.sc160.10 Carica papaya HOM05D001656 ORTHO05D003489 6.6e-47 191.8 218 51.4
Sp2g05240 Schrenkiella parvula HOM05D001656 ORTHO05D003489 6.6e-47 191.8 210 50.0
Thecc.08G080200 Theobroma cacao HOM05D001656 ORTHO05D003489 6.6e-47 191.8 201 52.7
Duzib116G0138 Durio zibethinus HOM05D001656 ORTHO05D003489 8.6e-47 191.4 227 48.0
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.1e-46 191.0 200 54.0
Phvul.006G210700 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.5e-46 190.7 212 51.4
Ca_03352_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 1.9e-46 190.3 113 83.2
Duzib093G0139 Durio zibethinus HOM05D001656 ORTHO05D003489 1.9e-46 190.3 216 49.5
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.9e-46 190.3 200 54.0
Aa31LG2G10790 Aethionema arabicum HOM05D001656 ORTHO05D003489 2.5e-46 189.9 231 46.3
BraA09t37464Z Brassica rapa HOM05D001656 ORTHO05D003489 3.3e-46 189.5 200 52.0
Ciclev10000361m.g Citrus clementina HOM05D001656 ORTHO05D003489 3.3e-46 189.5 180 57.2
Lsat_1_v5_gn_1_69641 Lactuca sativa HOM05D001656 ORTHO05D003489 3.3e-46 189.5 209 51.2
VMungo0251G2951 Vigna mungo HOM05D001656 ORTHO05D003489 3.3e-46 189.5 219 47.9
FvH4_5g33540 Fragaria vesca HOM05D001656 ORTHO05D003489 4.3e-46 189.1 198 54.0
BcaC04g22145 Brassica carinata HOM05D001656 ORTHO05D003489 7.3e-46 188.3 200 51.5
Carub.0002s0620 Capsella rubella HOM05D001656 ORTHO05D003489 7.3e-46 188.3 209 49.8
Gohir.A01G125100 Gossypium hirsutum HOM05D001656 ORTHO05D003489 7.3e-46 188.3 227 45.4
Gorai.002G137500 Gossypium raimondii HOM05D001656 ORTHO05D003489 7.3e-46 188.3 227 45.4
Gohir.D01G112700 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.2e-45 187.6 227 45.4
CSS0033770 Camellia sinensis var. sinensis HOM05D001656 ORTHO05D003489 1.6e-45 187.2 201 51.2
A09p18330 Brassica napus HOM05D001656 ORTHO05D003489 3.6e-45 186.0 201 51.7
Nn1g06077 Nelumbo nucifera HOM05D001656 ORTHO05D003489 3.6e-45 186.0 195 51.8
C09p22870 Brassica napus HOM05D001656 ORTHO05D003489 8.1e-45 184.9 201 51.2
BolC9t55207H Brassica oleracea HOM05D001656 ORTHO05D003489 8.1e-45 184.9 201 51.2
HPP92_009299 Vanilla planifolia HOM05D001656 ORTHO05D003489 8.1e-45 184.9 212 47.6
Phvul.002G204000 Phaseolus vulgaris HOM05D001656 ORTHO05D003489 1.4e-44 184.1 223 47.5
Sabra19G0088800 Salix brachista HOM05D001656 ORTHO05D003489 1.8e-44 183.7 215 51.2
Migut.D01892 Erythranthe guttata HOM05D001656 ORTHO05D003489 2.4e-44 183.3 208 47.1
Thhalv10006833m.g Eutrema salsugineum HOM05D001656 ORTHO05D003489 4.0e-44 182.6 208 49.0
Lj4g0026988 Lotus japonicus HOM05D001656 ORTHO05D003489 4.0e-44 182.6 213 50.7
Medtr4g094378 Medicago truncatula HOM05D001656 ORTHO05D003489 5.2e-44 182.2 211 51.2
Carub.0001s0941 Capsella rubella HOM05D001656 ORTHO05D003489 6.8e-44 181.8 200 50.5
Potri.019G077700 Populus trichocarpa HOM05D001656 ORTHO05D003489 6.8e-44 181.8 215 50.7
Lalb_Chr18g0060791 Lupinus albus HOM05D001656 ORTHO05D003489 1.5e-43 180.6 214 50.9
Sp1g08640 Schrenkiella parvula HOM05D001656 ORTHO05D003489 1.5e-43 180.6 214 47.2
Lalb_Chr07g0189321 Lupinus albus HOM05D001656 ORTHO05D003489 2.0e-43 180.3 211 51.7
Gohir.D05G217800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.4e-43 179.5 197 48.7
Gorai.009G224600 Gossypium raimondii HOM05D001656 ORTHO05D003489 3.4e-43 179.5 197 48.7
Psat7g095680 Pisum sativum HOM05D001656 ORTHO05D003489 5.8e-43 178.7 224 46.9
SalBow5G0425 Salvia bowleyana HOM05D001656 ORTHO05D003489 5.8e-43 178.7 203 53.2
AL1G20690 Arabidopsis lyrata HOM05D001656 ORTHO05D003489 7.6e-43 178.3 207 48.8
BcaC05g24823 Brassica carinata HOM05D001656 ORTHO05D003489 7.6e-43 178.3 221 46.2
A06p06680 Brassica napus HOM05D001656 ORTHO05D003489 1.7e-42 177.2 218 47.2
CARHR010100 Cardamine hirsuta HOM05D001656 ORTHO05D003489 2.9e-42 176.4 224 43.3
Ca_00099_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 4.9e-42 175.6 213 47.9
Glyma.15G049300 Glycine max HOM05D001656 ORTHO05D003489 4.9e-42 175.6 191 52.4
unitig_744.g24393 Utricularia gibba HOM05D001656 ORTHO05D003489 4.9e-42 175.6 189 50.3
SalBow3G0204 Salvia bowleyana HOM05D001656 ORTHO05D003489 6.4e-42 175.3 220 45.9
AT1G09980 Arabidopsis thaliana HOM05D001656 ORTHO05D003489 8.4e-42 174.9 207 48.3
Ca_18321_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 1.1e-41 174.5 211 49.3
Glyma.08G183400 Glycine max HOM05D001656 ORTHO05D003489 1.1e-41 174.5 196 49.5
Migut.I00076 Erythranthe guttata HOM05D001656 ORTHO05D003489 2.4e-41 173.3 192 49.5
Sabra13G0090300 Salix brachista HOM05D001656 ORTHO05D003489 3.2e-41 172.9 201 52.2
EL10Ac3g05154 Beta vulgaris HOM05D001656 ORTHO05D003489 5.4e-41 172.2 205 45.9
BraA06t23882Z Brassica rapa HOM05D001656 ORTHO05D003489 5.4e-41 172.2 218 46.3
Aa31LG1G4900 Aethionema arabicum HOM05D001656 ORTHO05D003489 9.3e-41 171.4 201 49.3
BcaC07g41848 Brassica carinata HOM05D001656 ORTHO05D003489 9.3e-41 171.4 204 50.5
A09p65220 Brassica napus HOM05D001656 ORTHO05D003489 9.3e-41 171.4 208 49.5
BolC8t52452H Brassica oleracea HOM05D001656 ORTHO05D003489 9.3e-41 171.4 204 50.5
BraA09t41867Z Brassica rapa HOM05D001656 ORTHO05D003489 9.3e-41 171.4 208 49.5
C08p49170 Brassica napus HOM05D001656 ORTHO05D003489 1.6e-40 170.6 189 52.4
Gohir.D06G026800 Gossypium hirsutum HOM05D001656 ORTHO05D003489 1.6e-40 170.6 207 48.8
C05p08150 Brassica napus HOM05D001656 ORTHO05D003489 2.1e-40 170.2 220 45.0
BolC5t29567H Brassica oleracea HOM05D001656 ORTHO05D003489 2.1e-40 170.2 220 45.0
TPR.G23822 Trifolium pratense HOM05D001656 ORTHO05D003489 2.1e-40 170.2 198 50.0
Lj6g0015393 Lotus japonicus HOM05D001656 ORTHO05D003489 3.5e-40 169.5 211 48.3
ATR0820G193 Amborella trichopoda HOM05D001656 ORTHO05D003489 1.0e-39 167.9 235 46.4
Potri.013G104400 Populus trichocarpa HOM05D001656 ORTHO05D003489 1.7e-39 167.2 238 47.5
CDE06G2450 Ceratophyllum demersum HOM05D001656 ORTHO05D003489 3.9e-39 166.0 179 52.5
Manes.05G186300 Manihot esculenta HOM05D001656 ORTHO05D003489 6.6e-39 165.2 208 47.6
Manes.18G053500 Manihot esculenta HOM05D001656 ORTHO05D003489 6.6e-39 165.2 215 47.4
Zm00001eb407660 Zea mays HOM05D001656 ORTHO05D003489 8.7e-39 164.9 195 47.2
AUR62005970 Chenopodium quinoa HOM05D001656 ORTHO05D003489 1.1e-38 164.5 205 44.4
AUR62028100 Chenopodium quinoa HOM05D001656 ORTHO05D003489 1.1e-38 164.5 218 43.6
Os12g0164800 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D003489 5.6e-38 162.2 190 45.3
arahy.Tifrunner.gnm1.ann1.AB9876 Arachis hypogaea HOM05D001656 ORTHO05D003489 2.8e-37 159.8 191 49.7
arahy.Tifrunner.gnm1.ann1.0H8WKK Arachis hypogaea HOM05D001656 ORTHO05D003489 6.2e-37 158.7 214 46.7
Hund09724 Selenicereus undatus HOM05D001656 ORTHO05D003489 3.1e-36 156.4 236 43.2
Gohir.A05G214500 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.5e-32 142.9 173 45.7
Ah.07g204550 Amaranthus hybridus HOM05D001656 ORTHO05D003489 3.0e-31 139.8 183 42.1
Nitab4.5_0000642g0240 Nicotiana tabacum HOM05D001656 ORTHO05D003489 9.6e-30 134.8 182 46.2
ECA238G2565 Erigeron canadensis HOM05D001656 ORTHO05D003489 1.3e-26 124.4 217 40.6
GSVIVG01014971001 Vitis vinifera HOM05D001656 ORTHO05D003489 2.2e-26 123.6 104 55.8
AagrBONN_evm.TU.Sc2ySwM_362.276 Anthoceros agrestis HOM05D001656 ORTHO05D003489 3.2e-25 119.8 178 41.6
Ca_15557_v3 Cicer arietinum L. HOM05D001656 ORTHO05D003489 7.1e-25 118.6 83 67.5
SEGI_30798 Sequoiadendron giganteum HOM05D001656 ORTHO05D003489 7.1e-25 118.6 157 43.9
Gohir.D06G025900 Gossypium hirsutum HOM05D001656 ORTHO05D003489 3.5e-24 116.3 114 54.4
DCAR_005504 Daucus carota HOM05D001656 ORTHO05D003489 1.8e-23 114.0 139 49.6
SMO353G0380 Selaginella moellendorffii HOM05D001656 ORTHO05D003489 3.7e-21 106.3 173 39.3
COL.COLO4_35358 Corchorus olitorius HOM05D001656 ORTHO05D003489 1.4e-20 104.4 128 45.3
Haze_19010 Corylus avellana HOM05D001656 ORTHO05D003489 2.4e-20 103.6 62 74.2
Zm00001eb202450 Zea mays HOM05D001656 ORTHO05D003489 1.3e-18 97.8 129 46.5
SHI20938 Sapria himalayana HOM05D001656 ORTHO05D003489 6.5e-18 95.5 61 65.6
arahy.Tifrunner.gnm1.ann1.Z08EY9 Arachis hypogaea HOM05D001656 ORTHO05D003489 6.0e-16 89.0 53 75.5
arahy.Tifrunner.gnm1.ann1.G0H17A Arachis hypogaea HOM05D001656 ORTHO05D003489 1.1e-14 84.7 49 75.5
Lsat_1_v5_gn_5_90280 Lactuca sativa HOM05D001656 ORTHO05D003489 2.8e-13 80.1 82 48.8
Cpa.g.sc2.34 Carica papaya HOM05D001656 ORTHO05D003489 3.7e-13 79.7 51 66.7
Gohir.D06G026833 Gossypium hirsutum HOM05D001656 ORTHO05D003489 4.8e-13 79.3 54 66.7
Cpa.g.sc2.37 Carica papaya HOM05D001656 ORTHO05D003489 8.2e-13 78.6 81 50.6
arahy.Tifrunner.gnm1.ann1.GQ6E1B Arachis hypogaea HOM05D001656 ORTHO05D003489 6.9e-12 75.5 52 65.4
CBR_g50209 Chara braunii HOM05D001656 ORTHO05D003489 9.3e-09 65.1 160 30.6
SHI20937 Sapria himalayana HOM05D001656 ORTHO05D003489 2.1e-08 63.9 86 46.5
Lsat_1_v5_gn_1_25940 Lactuca sativa HOM05D001656 ORTHO05D003489 1.8e-07 60.8 52 55.8


User provided reference genes

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