Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 2.1e-65 252.3 132 100.0
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 1.6e-57 226.1 132 90.9
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 7.9e-57 223.8 132 89.4
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 7.9e-57 223.8 132 89.4
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 9.9e-52 206.8 132 83.3
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 84.1
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 3.8e-51 204.9 132 82.6
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 6.4e-51 204.1 163 72.4
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 8.4e-51 203.8 132 82.6
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 3.2e-50 201.8 132 81.8
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 5.5e-50 201.1 132 81.1
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 5.5e-50 201.1 132 82.6
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.2e-49 199.9 130 79.2
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 1.6e-49 199.5 133 82.0
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 6.0e-49 197.6 133 80.5
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 6.0e-49 197.6 132 79.5
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 6.0e-49 197.6 133 82.0
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 7.9e-49 197.2 133 80.5
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.3e-48 196.4 132 84.1
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 1.3e-48 196.4 134 80.6
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.3e-48 196.4 133 80.5
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 2.3e-48 195.7 132 80.3
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 3.0e-48 195.3 133 80.5
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 3.9e-48 194.9 133 80.5
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 3.9e-48 194.9 133 80.5
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 3.9e-48 194.9 133 80.5
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 3.9e-48 194.9 133 80.5
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 78.8
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 3.9e-48 194.9 133 79.7
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 5.1e-48 194.5 127 81.9
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 5.1e-48 194.5 132 78.8
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 5.1e-48 194.5 133 79.7
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.7e-48 194.1 128 81.2
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.7e-48 193.7 133 80.5
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 8.7e-48 193.7 133 79.7
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.1e-47 193.4 134 78.4
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 1.5e-47 193.0 133 80.5
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.5e-47 193.0 134 80.6
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 1.9e-47 192.6 132 76.5
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 2.5e-47 192.2 134 80.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.5e-47 192.2 133 79.7
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.5e-47 192.2 133 79.7
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 3.3e-47 191.8 132 75.8
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 3.3e-47 191.8 132 75.8
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 4.3e-47 191.4 134 78.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 76.5
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 78.0
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 77.3
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.3e-47 191.4 133 78.9
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 76.5
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 5.6e-47 191.0 132 76.5
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 7.4e-47 190.7 132 81.1
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 7.4e-47 190.7 134 79.9
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 7.4e-47 190.7 134 79.9
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 7.4e-47 190.7 134 79.9
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 7.4e-47 190.7 134 79.9
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 7.4e-47 190.7 130 80.8
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 7.4e-47 190.7 133 78.9
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 7.4e-47 190.7 133 78.2
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.3e-46 189.9 135 77.0
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.3e-46 189.9 133 78.2
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.6e-46 189.5 134 78.4
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 1.6e-46 189.5 134 78.4
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.6e-46 189.5 133 78.2
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 1.6e-46 189.5 137 74.5
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.6e-46 189.5 132 73.5
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 1.6e-46 189.5 133 78.9
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 2.1e-46 189.1 129 77.5
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 2.1e-46 189.1 133 78.9
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.1e-46 189.1 133 78.9
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 2.8e-46 188.7 134 78.4
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 2.8e-46 188.7 132 79.5
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 2.8e-46 188.7 133 79.7
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.8e-46 188.7 132 75.0
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.7e-46 188.3 132 76.5
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 4.8e-46 188.0 131 77.1
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 4.8e-46 188.0 132 75.8
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 6.2e-46 187.6 132 75.8
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 8.2e-46 187.2 132 76.5
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 8.2e-46 187.2 133 78.2
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.1e-45 186.8 132 76.5
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.8e-45 186.0 133 76.7
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.8e-45 186.0 132 74.2
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.4e-45 185.7 130 78.5
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 2.4e-45 185.7 134 76.9
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.1e-45 185.3 132 75.8
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 4.0e-45 184.9 132 74.2
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 5.3e-45 184.5 132 75.0
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 5.3e-45 184.5 132 75.0
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 6.9e-45 184.1 133 75.9
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 6.9e-45 184.1 132 77.3
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 6.9e-45 184.1 133 76.7
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 9.0e-45 183.7 130 77.7
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 9.0e-45 183.7 132 73.5
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.2e-44 183.3 133 74.4
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.5e-44 183.0 132 71.2
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 3.4e-44 181.8 134 75.4
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 4.5e-44 181.4 132 71.2
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.5e-44 181.4 132 74.2
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 5.8e-44 181.0 131 75.6
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 1.0e-43 180.3 132 74.2
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 1.0e-43 180.3 131 73.3
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 1.0e-43 180.3 131 73.3
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 1.7e-43 179.5 132 74.2
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 2.2e-43 179.1 133 74.4
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 2.9e-43 178.7 133 74.4
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 2.9e-43 178.7 136 72.1
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 3.8e-43 178.3 104 89.4
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 6.5e-43 177.6 131 74.8
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 8.4e-43 177.2 132 72.7
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.1e-42 176.8 133 74.4
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.4e-42 176.4 131 71.8
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.9e-42 176.0 122 76.2
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 2.5e-42 175.6 133 71.4
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 2.5e-42 175.6 131 71.8
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 2.5e-42 175.6 134 72.4
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 3.2e-42 175.3 133 74.4
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 7.1e-42 174.1 132 74.2
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 1.2e-41 173.3 132 72.7
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.7e-41 172.2 132 73.5
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.5e-41 171.8 134 71.6
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 6.0e-41 171.0 133 73.7
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 1.3e-40 169.9 131 70.2
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.3e-40 169.9 131 71.8
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.3e-40 169.1 105 83.8
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 2.3e-40 169.1 125 72.8
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 9.7e-39 163.7 122 72.1
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 1.6e-38 162.9 130 66.9
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 2.2e-38 162.5 124 71.0
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.3e-38 161.0 127 69.3
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.4e-37 159.8 128 67.2
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 5.3e-37 157.9 131 67.2
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 4.5e-36 154.8 132 65.2
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 2.5e-34 149.1 129 65.1
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.1e-31 140.2 78 92.3
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 9.7e-31 137.1 133 62.4
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 9.7e-31 137.1 133 59.4
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 5.3e-29 131.3 136 58.1
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.5e-23 113.2 133 47.4
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 3.7e-22 108.6 76 75.0
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 7.7e-20 100.9 106 55.7
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 1.3e-11 73.6 48 77.1
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.7e-11 73.2 64 60.9
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.0e-08 63.9 92 41.3
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 2.3e-08 62.8 78 44.9


User provided reference genes

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