Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 2.2e-76 290.0 330 100.0
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.8e-70 270.4 330 97.0
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.0e-68 264.6 327 96.9
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.7e-68 263.8 330 96.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.5e-67 260.0 330 95.5
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 2.7e-66 256.5 330 94.5
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 6.1e-66 255.4 330 94.8
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 3.0e-65 253.1 330 93.6
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 3.9e-65 252.7 330 93.3
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 5.2e-65 252.3 330 94.5
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 5.2e-65 252.3 330 94.5
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 5.2e-65 252.3 330 93.9
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.7e-65 251.9 330 94.2
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 4.5e-61 239.2 330 92.7
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 5.0e-60 235.7 330 92.7
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 1.5e-59 234.2 324 92.0
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 1.5e-59 234.2 325 92.6
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 3.2e-59 233.0 322 91.9
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 4.2e-59 232.6 326 93.6
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 7.2e-59 231.9 323 87.6
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 9.4e-59 231.5 324 92.3
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.6e-58 230.7 332 90.7
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.6e-58 230.7 322 93.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.1e-58 230.3 326 90.8
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.6e-58 229.6 326 92.3
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 3.6e-58 229.6 330 88.5
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 4.7e-58 229.2 322 92.9
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.7e-58 229.2 332 90.7
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 8.0e-58 228.4 323 91.6
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.4e-57 227.6 317 93.4
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.8e-57 227.3 323 91.3
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 2.3e-57 226.9 328 90.5
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 2.3e-57 226.9 328 90.5
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 3.0e-57 226.5 322 91.9
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 3.0e-57 226.5 322 92.9
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 3.0e-57 226.5 322 92.9
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.0e-57 226.1 326 91.1
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 4.0e-57 226.1 325 91.7
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 5.2e-57 225.7 332 81.6
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 5.2e-57 225.7 326 88.3
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.8e-57 225.3 326 91.1
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 8.8e-57 224.9 327 92.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 8.8e-57 224.9 326 91.7
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 8.8e-57 224.9 326 89.9
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-56 224.6 309 94.8
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.2e-56 224.6 321 92.2
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 1.2e-56 224.6 326 88.7
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.5e-56 224.2 309 94.5
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.5e-56 224.2 321 90.0
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.0e-56 223.8 330 89.1
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.6e-56 223.4 310 94.2
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.6e-56 223.4 326 89.9
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.4e-56 222.6 326 90.5
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 5.7e-56 222.2 322 89.8
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 5.7e-56 222.2 323 91.3
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 5.7e-56 222.2 327 90.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 9.8e-56 221.5 312 91.0
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 9.8e-56 221.5 323 92.0
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.7e-55 220.7 319 91.5
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.7e-55 220.7 322 91.9
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 4.8e-55 219.2 329 90.0
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 6.3e-55 218.8 317 91.5
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 8.3e-55 218.4 319 91.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 8.3e-55 218.4 318 90.6
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.4e-54 217.6 325 89.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.8e-54 217.2 330 89.4
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.4e-54 216.9 330 76.4
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.4e-54 216.9 323 91.3
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.4e-54 216.9 312 89.4
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.1e-54 216.5 325 90.5
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.1e-54 216.5 318 89.9
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 3.1e-54 216.5 311 93.6
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 5.4e-54 215.7 306 91.8
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-53 214.5 321 90.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.2e-53 214.5 322 89.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 2.0e-53 213.8 341 61.9
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.0e-53 213.8 338 67.8
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 2.7e-53 213.4 321 91.0
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 4.5e-53 212.6 368 68.5
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 4.5e-53 212.6 328 87.5
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 5.9e-53 212.2 325 88.9
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 5.9e-53 212.2 328 88.4
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 5.9e-53 212.2 312 91.0
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 1.7e-52 210.7 311 92.6
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.7e-52 210.7 311 92.3
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.7e-52 210.7 319 90.3
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.2e-52 210.3 317 91.2
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 2.2e-52 210.3 333 79.9
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 89.3
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 90.9
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.9e-52 209.9 312 91.7
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 5.0e-52 209.1 312 91.7
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 5.0e-52 209.1 332 88.9
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.5e-52 208.8 323 87.9
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 8.5e-52 208.4 312 91.3
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 8.5e-52 208.4 318 88.7
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.1e-51 208.0 321 89.7
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.5e-51 207.6 309 92.6
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.5e-51 207.6 309 92.6
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.5e-51 207.6 297 94.6
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.5e-51 207.6 370 65.7
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.9e-51 207.2 311 92.3
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 2.5e-51 206.8 319 90.6
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.2e-51 206.1 251 88.4
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 7.2e-51 205.3 316 90.8
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 9.4e-51 204.9 311 92.0
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.6e-50 204.1 319 90.3
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.1e-50 203.8 310 89.7
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-49 200.7 296 92.6
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 2.3e-49 200.3 251 85.7
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 5.2e-49 199.1 321 76.9
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.2e-49 199.1 318 86.5
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.2e-49 199.1 318 86.5
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 2.0e-48 197.2 325 75.1
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 7.5e-48 195.3 316 89.2
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.7e-47 194.1 345 84.6
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-47 193.7 327 82.0
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 2.2e-47 193.7 327 82.0
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 2.8e-47 193.4 310 90.3
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 6.3e-47 192.2 330 73.3
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.8e-46 190.7 319 85.6
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.8e-46 190.7 345 76.8
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.4e-46 190.3 323 87.9
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 2.4e-46 190.3 243 71.2
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.6e-45 187.6 316 87.0
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.6e-45 187.6 312 85.3
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.5e-45 186.4 327 87.5
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.3e-44 184.5 339 82.0
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.3e-44 183.7 327 82.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 5.0e-44 182.6 330 85.8
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.6e-44 181.8 323 70.6
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 2.5e-43 180.3 327 82.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 7.2e-43 178.7 317 78.2
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 7.2e-43 178.7 327 81.7
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 9.5e-43 178.3 310 88.4
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 9.5e-43 178.3 310 88.1
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.2e-42 177.9 327 76.1
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.4e-41 174.5 331 71.3
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.4e-41 174.5 86 93.0
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.8e-41 174.1 327 82.9
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.4e-40 169.9 259 82.6
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 7.5e-40 168.7 101 82.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 9.8e-40 168.3 99 81.8
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 2.9e-39 166.8 322 52.8
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.7e-39 166.4 96 82.3
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.7e-39 166.4 96 82.3
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.3e-39 165.6 94 83.0
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 6.3e-39 165.6 94 83.0
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.8e-38 164.1 93 83.9
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 3.2e-38 163.3 248 81.5
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.0e-38 162.2 79 93.7
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.6e-37 161.0 86 84.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.0e-37 160.6 105 73.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 2.9e-36 156.8 94 78.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 5.6e-35 152.5 243 80.2
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 2.4e-30 137.1 100 66.0
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 4.1e-30 136.3 335 74.9
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.0e-29 132.5 73 83.6
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 5.0e-28 129.4 304 78.9
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.1e-27 128.3 276 81.9
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.6e-26 124.4 78 76.9
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 3.9e-20 103.2 118 94.1
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.3e-19 99.8 65 73.8
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.1e-18 97.4 73 67.1
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.3e-17 94.0 90 50.0
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 3.1e-17 93.6 50 82.0
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 4.0e-17 93.2 247 69.6
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.2e-17 92.8 259 86.9
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.0e-16 90.9 64 62.5
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 5.8e-16 89.4 119 53.8
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 6.4e-15 85.9 63 61.9
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.5e-13 80.1 43 83.7
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 3.9e-12 76.6 42 85.7
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 6.6e-12 75.9 48 79.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.5e-11 73.9 42 85.7
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.1e-10 70.9 42 83.3
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.5e-08 64.7 85 48.2
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 5.8e-08 62.8 47 66.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.3e-07 61.6 85 45.9
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.9e-07 59.7 32 84.4


User provided reference genes

Program Settings