Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 1.6e-225 785.8 414 100.0
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 7.9e-180 634.0 409 81.9
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 1.4e-168 596.7 413 78.2
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 4.7e-164 581.6 351 83.5
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 4.0e-155 552.0 415 70.1
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 2.2e-153 546.2 415 72.0
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 1.4e-152 543.5 421 68.9
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 4.1e-152 542.0 414 69.8
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 5.5e-149 531.6 422 66.8
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 6.8e-139 498.0 416 65.6
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 3.7e-137 492.3 414 63.0
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 8.3e-137 491.1 414 63.0
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 2.9e-113 412.9 411 55.2
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 1.1e-112 411.0 365 60.3
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 9.2e-112 407.9 381 58.8
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 4.6e-111 405.6 417 54.0
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 2.5e-109 399.8 416 52.6
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 6.2e-108 395.2 378 58.2
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.4e-107 394.0 350 58.0
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 8.9e-107 391.3 415 53.7
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 1.5e-106 390.6 347 57.1
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.7e-105 387.1 347 56.8
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 8.4e-105 384.8 382 54.5
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 8.4e-105 384.8 349 56.7
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 1.9e-104 383.6 413 51.6
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 4.1e-104 382.5 383 56.7
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 7.1e-104 381.7 376 53.7
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 9.2e-104 381.3 416 51.4
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 9.2e-104 381.3 347 56.2
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 9.2e-104 381.3 376 53.7
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 4.6e-103 379.0 418 50.5
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 6.6e-102 375.2 415 51.1
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 1.1e-101 374.4 365 53.7
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 1.9e-101 373.6 376 52.1
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 3.6e-100 369.4 378 53.4
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 6.2e-100 368.6 372 54.0
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 8.1e-100 368.2 382 53.1
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 1.4e-99 367.5 377 53.8
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 5.2e-99 365.5 363 54.0
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 8.9e-99 364.8 418 51.0
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 1.5e-98 364.0 368 54.1
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 3.4e-98 362.8 415 49.6
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 4.4e-98 362.5 373 52.8
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 6.4e-97 358.6 363 55.4
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.4e-96 356.7 383 52.0
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.4e-96 356.7 383 52.0
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 4.2e-96 355.9 375 52.0
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 1.6e-95 354.0 378 51.9
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 2.7e-95 353.2 377 52.5
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 2.5e-93 346.7 387 50.1
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 1.3e-92 344.4 381 50.7
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 8.1e-92 341.7 363 52.1
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 1.2e-90 337.8 364 50.8
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 1.2e-90 337.8 378 50.0
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 1.2e-90 337.8 416 47.8
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 2.0e-90 337.0 369 51.5
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 7.6e-90 335.1 327 53.2
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 1.7e-89 334.0 412 48.1
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 3.8e-89 332.8 409 46.2
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 8.4e-89 331.6 329 56.8
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 1.1e-88 331.3 380 47.1
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 1.1e-88 331.3 370 50.0
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 1.9e-88 330.5 372 50.5
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 1.2e-87 327.8 356 49.2
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 3.5e-87 326.2 320 54.4
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 1.1e-85 321.2 376 48.7
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 3.3e-85 319.7 379 49.1
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 4.8e-84 315.8 357 49.9
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 6.2e-84 315.5 366 49.2
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 1.4e-83 314.3 321 53.0
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 1.8e-83 313.9 377 49.6
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 2.4e-83 313.5 378 48.4
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 9.0e-83 311.6 378 46.8
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 9.9e-82 308.1 380 48.9
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 1.3e-81 307.8 373 49.9
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 1.7e-81 307.4 356 46.6
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 8.4e-81 305.1 345 49.6
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 4.2e-80 302.8 375 46.9
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 3.5e-79 299.7 370 47.0
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 3.5e-79 299.7 370 47.0
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 6.0e-79 298.9 359 48.2
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 1.0e-78 298.1 362 45.6
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 3.9e-78 296.2 370 47.3
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 1.1e-77 294.7 367 46.9
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 1.9e-77 293.9 367 46.9
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 4.8e-76 289.3 359 47.4
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 6.9e-75 285.4 350 48.0
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 3.2e-72 276.6 371 44.2
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.1e-69 268.1 315 52.1
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 1.4e-67 261.2 300 48.3
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 9.0e-67 258.5 299 48.5
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 7.6e-66 255.4 279 49.1
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.0e-62 245.0 360 43.3
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 3.7e-60 236.5 356 38.5
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 4.8e-60 236.1 364 40.7
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 1.9e-56 224.2 362 38.4
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 7.2e-56 222.2 240 53.3
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 7.2e-56 222.2 240 53.3
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 1.5e-53 214.5 367 40.9
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 7.4e-53 212.2 236 50.4
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 4.1e-43 179.9 234 46.2
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 1.9e-40 171.0 329 35.0
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 5.2e-38 162.9 273 38.8
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 6.5e-33 146.0 396 29.5
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.1e-32 145.2 125 60.0
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.1e-32 145.2 125 60.0
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.6e-29 134.0 238 39.5
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 5.7e-29 132.9 145 49.7
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 6.3e-28 129.4 220 40.5
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 7.0e-27 125.9 177 45.2
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 5.9e-26 122.9 339 32.2
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.3e-25 121.7 116 55.2
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 4.2e-24 116.7 157 47.8
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 6.8e-22 109.4 333 28.8
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 1.2e-21 108.6 173 34.1
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 4.9e-20 103.2 129 44.2
Lalb_Chr13g0294981 Lupinus albus HOM05D006726 ORTHO05D008328 1.1e-11 75.5 63 66.7
CBR_g4449 Chara braunii HOM05D006726 ORTHO05D008328 2.8e-07 60.8 137 32.8


User provided reference genes

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