Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24368 Trifolium pratense HOM05D002063 ORTHO05D002075 4.4e-90 334.7 183 100.0
TPR.G6806 Trifolium pratense HOM05D002063 ORTHO05D002075 1.3e-46 190.3 104 95.2
Medtr4g065073 Medicago truncatula HOM05D002063 ORTHO05D002075 1.7e-33 146.7 133 70.7
Medtr8g086460 Medicago truncatula HOM05D002063 ORTHO05D002075 1.7e-33 146.7 133 70.7
Psat7g070160 Pisum sativum HOM05D002063 ORTHO05D002075 3.3e-21 105.9 133 54.1
Glyma.05G159000 Glycine max HOM05D002063 ORTHO05D002075 5.3e-19 98.6 164 43.3
Lj4g0025797 Lotus japonicus HOM05D002063 ORTHO05D002075 7.6e-18 94.7 127 49.6
Glyma.08G116800 Glycine max HOM05D002063 ORTHO05D002075 1.3e-17 94.0 167 40.7
Phvul.002G239200 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 1.2e-15 87.4 171 39.8
Glyma.13G229000 Glycine max HOM05D002063 ORTHO05D002075 2.7e-15 86.3 175 38.9
Glyma.15G083500 Glycine max HOM05D002063 ORTHO05D002075 6.0e-15 85.1 172 39.5
Medtr2g016190 Medicago truncatula HOM05D002063 ORTHO05D002075 3.0e-14 82.8 71 63.4
Phvul.006G175400 Phaseolus vulgaris HOM05D002063 ORTHO05D002075 3.9e-14 82.4 176 39.2
VMungo0251G3479 Vigna mungo HOM05D002063 ORTHO05D002075 3.9e-14 82.4 173 36.4
VMungo0540G2378 Vigna mungo HOM05D002063 ORTHO05D002075 3.9e-14 82.4 178 37.6
Lalb_Chr07g0186431 Lupinus albus HOM05D002063 ORTHO05D002075 5.1e-14 82.0 169 43.2
TPR.G11764 Trifolium pratense HOM05D002063 ORTHO05D002075 8.7e-14 81.3 182 38.5
Lalb_Chr18g0054571 Lupinus albus HOM05D002063 ORTHO05D002075 1.1e-13 80.9 180 41.7
Ca_13072_v3 Cicer arietinum L. HOM05D000037 ORTHO05D002075 1.9e-13 80.1 178 36.0
Lj6g0027755 Lotus japonicus HOM05D002063 ORTHO05D002075 3.3e-13 79.3 174 36.2
Psat1g197800 Pisum sativum HOM05D002063 ORTHO05D002075 3.3e-13 79.3 178 41.0
arahy.Tifrunner.gnm1.ann1.67CBH9 Arachis hypogaea HOM05D002063 ORTHO05D002075 4.8e-12 75.5 130 50.8
arahy.Tifrunner.gnm1.ann1.90CUL1 Arachis hypogaea HOM05D002063 ORTHO05D002075 3.4e-10 69.3 73 58.9
Ciclev10014532m.g Citrus clementina HOM05D002063 ORTHO05D002075 1.3e-09 67.4 75 44.0
MD10G1278900 Malus domestica HOM05D002063 ORTHO05D002075 1.3e-09 67.4 107 39.3
Thecc.06G169400 Theobroma cacao HOM05D002063 ORTHO05D002075 2.9e-09 66.2 74 48.6
arahy.Tifrunner.gnm1.ann1.BM19ED Arachis hypogaea HOM05D002063 ORTHO05D002075 8.5e-09 64.7 192 31.2
CiPaw.09G070400 Carya illinoinensis HOM05D002063 ORTHO05D002075 8.5e-09 64.7 77 46.8
Duzib061G0001 Durio zibethinus HOM05D002063 ORTHO05D002075 8.5e-09 64.7 174 32.8
Gohir.D10G037200 Gossypium hirsutum HOM05D002063 ORTHO05D002075 8.5e-09 64.7 75 50.7
Gorai.011G039100 Gossypium raimondii HOM05D002063 ORTHO05D002075 8.5e-09 64.7 75 50.7
MD05G1299600 Malus domestica HOM05D002063 ORTHO05D002075 8.5e-09 64.7 164 32.3
Manes.17G056500 Manihot esculenta HOM05D002063 ORTHO05D002075 8.5e-09 64.7 178 33.7
Potri.004G057800 Populus trichocarpa HOM05D002063 ORTHO05D002075 8.5e-09 64.7 78 52.6
Sabra11G0048600 Salix brachista HOM05D002063 ORTHO05D002075 8.5e-09 64.7 78 50.0
Lj3g0021532 Lotus japonicus HOM05D002063 ORTHO05D002075 1.1e-08 64.3 84 45.2
FAN25G1222 Fragaria x ananassa HOM05D002063 ORTHO05D002075 1.9e-08 63.5 130 36.2
Medtr2g093020 Medicago truncatula HOM05D002063 ORTHO05D002075 1.9e-08 63.5 140 34.3
Gohir.A10G036500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 2.5e-08 63.2 171 35.7
FvH4_3g07680 Fragaria vesca HOM05D002063 ORTHO05D002075 3.2e-08 62.8 130 36.2
FAN11G1180 Fragaria x ananassa HOM05D002063 ORTHO05D002075 3.2e-08 62.8 130 36.2
Potri.011G067000 Populus trichocarpa HOM05D002063 ORTHO05D002075 3.2e-08 62.8 77 48.1
Cpa.g.sc7.77 Carica papaya HOM05D002063 ORTHO05D002075 4.2e-08 62.4 173 31.8
Nn1g04435 Nelumbo nucifera HOM05D002063 ORTHO05D002075 4.2e-08 62.4 169 33.1
RcHm_v2.0_Chr5g0010991 Rosa chinensis HOM05D002063 ORTHO05D002075 4.2e-08 62.4 143 34.3
arahy.Tifrunner.gnm1.ann1.V8BLVD Arachis hypogaea HOM05D002063 ORTHO05D002075 5.5e-08 62.0 195 30.8
Sabra04G0037500 Salix brachista HOM05D002063 ORTHO05D002075 5.5e-08 62.0 78 50.0
AUR62037396 Chenopodium quinoa HOM05D002063 ORTHO05D002075 7.2e-08 61.6 78 46.2
Oeu053234.3 Olea europaea HOM05D002063 ORTHO05D002075 7.2e-08 61.6 149 35.6
Prupe.4G062300 Prunus persica HOM05D002063 ORTHO05D002075 7.2e-08 61.6 170 29.4
Haze_06218 Corylus avellana HOM05D002063 ORTHO05D002075 9.4e-08 61.2 74 45.9
FAN16G0090 Fragaria x ananassa HOM05D002063 ORTHO05D002075 9.4e-08 61.2 108 38.9
Cfa000617 Carpinus fangiana HOM05D002063 ORTHO05D002075 1.2e-07 60.8 75 45.3
AUR62041743 Chenopodium quinoa HOM05D002063 ORTHO05D002075 1.6e-07 60.5 78 46.2
Duzib192G1071 Durio zibethinus HOM05D002063 ORTHO05D002075 1.6e-07 60.5 166 31.3
Gohir.A05G154500 Gossypium hirsutum HOM05D002063 ORTHO05D002075 2.1e-07 60.1 71 45.1
PGR042G2756 Punica granatum HOM05D002063 ORTHO05D002075 2.7e-07 59.7 142 38.7
Atru.chr10.1653 Acer truncatum HOM05D002063 ORTHO05D002075 6.1e-07 58.5 169 34.3
Eucgr.E02752 Eucalyptus grandis HOM05D002063 ORTHO05D002075 6.1e-07 58.5 73 46.6
Oeu024445.3 Olea europaea HOM05D002063 ORTHO05D002075 6.1e-07 58.5 175 29.7
Sc12g0003530 Simmondsia chinensis HOM05D002063 ORTHO05D002075 6.1e-07 58.5 77 46.8
GSVIVG01020715001 Vitis vinifera HOM05D002063 ORTHO05D002075 6.1e-07 58.5 132 37.9
Ah.01g003610 Amaranthus hybridus HOM05D002063 ORTHO05D002075 7.9e-07 58.2 80 38.8
Hund00879 Selenicereus undatus HOM05D002063 ORTHO05D002075 1.0e-06 57.8 77 41.6
Gorai.009G161900 Gossypium raimondii HOM05D002063 ORTHO05D002075 1.4e-06 57.4 162 29.0
Nn1g09178 Nelumbo nucifera HOM05D002063 ORTHO05D002075 2.3e-06 56.6 174 28.7
Gohir.D05G157400 Gossypium hirsutum HOM05D002063 ORTHO05D002075 3.0e-06 56.2 162 28.4
QL05p047487 Quercus lobata HOM05D002063 ORTHO05D002075 3.0e-06 56.2 73 43.8
Ah.01g015800 Amaranthus hybridus HOM05D002063 ORTHO05D002075 3.9e-06 55.8 80 36.2
Dinv16781 Davidia involucrata HOM05D002063 ORTHO05D002075 3.9e-06 55.8 77 44.2
Glyma.06G276800 Glycine max HOM05D002063 ORTHO05D002075 3.9e-06 55.8 79 40.5
Oeu039912.2 Olea europaea HOM05D002063 ORTHO05D002075 3.9e-06 55.8 75 45.3
QL08p041891 Quercus lobata HOM05D002063 ORTHO05D002075 3.9e-06 55.8 174 28.7
GSVIVG01021224001 Vitis vinifera HOM05D002063 ORTHO05D002075 3.9e-06 55.8 83 41.0
arahy.Tifrunner.gnm1.ann1.F9SG0G Arachis hypogaea HOM05D002063 ORTHO05D002075 5.1e-06 55.5 154 33.8
arahy.Tifrunner.gnm1.ann1.HJ4PFL Arachis hypogaea HOM05D002063 ORTHO05D002075 5.1e-06 55.5 154 33.8
CANSAT54G0797 Cannabis sativa HOM05D002063 ORTHO05D002075 6.7e-06 55.1 83 39.8
Medtr8g086480 Medicago truncatula HOM05D002063 ORTHO05D002075 6.7e-06 55.1 61 68.9
MSTRG.16154 Avicennia marina HOM05D002063 ORTHO05D002075 8.8e-06 54.7 96 38.5
Carub.0008s0211 Capsella rubella HOM05D009484 ORTHO05D011605 8.8e-06 54.7 94 38.3
Cfa023598 Carpinus fangiana HOM05D002063 ORTHO05D002075 8.8e-06 54.7 85 41.2
Cc05_g08420 Coffea canephora HOM05D002063 ORTHO05D002075 8.8e-06 54.7 99 33.3


User provided reference genes

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