Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 4.3e-63 244.6 132 100.0
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 2.2e-19 99.4 69 78.3
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.2e-19 99.4 69 78.3
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.2e-19 99.4 69 78.3
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 2.2e-19 99.4 69 78.3
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 3.9e-16 88.6 69 72.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 8.8e-16 87.4 69 72.5
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 8.8e-16 87.4 69 72.5
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 8.8e-16 87.4 69 72.5
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 8.8e-16 87.4 69 72.5
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 1.1e-15 87.0 69 72.5
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 1.5e-15 86.7 71 67.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 6.3e-14 81.3 71 64.8
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 6.3e-14 81.3 71 64.8
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 8.2e-14 80.9 71 66.2
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 1.1e-13 80.5 69 69.6
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.1e-13 80.5 70 65.7
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.1e-13 80.5 71 64.8
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 1.1e-13 80.5 71 64.8
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.4e-13 80.1 72 65.3
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 2.4e-13 79.3 69 68.1
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.3e-13 78.2 71 62.0
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.3e-13 78.2 71 63.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.3e-13 78.2 71 63.4
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 5.3e-13 78.2 71 63.4
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 5.3e-13 78.2 71 63.4
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 7.0e-13 77.8 76 63.2
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 9.1e-13 77.4 71 62.0
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 1.6e-12 76.6 61 73.8
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 1.6e-12 76.6 61 73.8
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 1.6e-12 76.6 61 73.8
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 1.6e-12 76.6 61 73.8
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.6e-12 76.6 61 73.8
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.6e-12 76.6 61 73.8
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.6e-12 76.6 61 73.8
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 1.6e-12 76.6 71 62.0
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 2.0e-12 76.3 71 62.0
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 7.7e-12 74.3 61 72.1
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 1.3e-11 73.6 71 60.6
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.7e-11 73.2 53 73.6
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 2.9e-11 72.4 71 62.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 3.8e-11 72.0 56 75.0
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.8e-11 72.0 71 62.0
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 3.8e-11 72.0 71 60.6
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 3.8e-11 72.0 71 62.0
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.9e-10 69.7 71 57.7
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 3.2e-10 68.9 70 60.0
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.2e-10 68.6 71 57.7
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.2e-10 68.6 71 57.7
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.2e-10 67.8 51 74.5
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 9.4e-10 67.4 57 71.9
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 1.2e-09 67.0 71 59.2
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 2.7e-09 65.9 69 58.0
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.7e-09 65.9 71 57.7
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.8e-08 63.2 69 63.8
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.8e-08 63.2 72 55.6
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 1.8e-08 63.2 56 67.9
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 1.8e-08 63.2 56 67.9
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 1.8e-08 63.2 56 67.9
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 1.8e-08 63.2 56 67.9
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 1.8e-08 63.2 56 67.9
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 1.8e-08 63.2 56 67.9
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.3e-08 62.8 71 52.1
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 4.0e-08 62.0 71 57.7
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 8.8e-08 60.8 77 49.4
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 1.2e-07 60.5 63 65.1
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 4.4e-07 58.5 69 53.6
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 4.4e-07 58.5 69 53.6
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 4.4e-07 58.5 69 53.6
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 4.4e-07 58.5 69 53.6
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 4.8e-06 55.1 53 64.2


User provided reference genes

Program Settings