Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G243 Trifolium pratense HOM05D003616 ORTHO05D004289 3.9e-66 254.6 123 100.0
Medtr3g114070 Medicago truncatula HOM05D003616 ORTHO05D004289 2.6e-54 215.3 108 95.4
Ca_15480_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 8.4e-53 210.3 107 92.5
Psat5g012880 Pisum sativum HOM05D003616 ORTHO05D004289 7.1e-52 207.2 105 94.3
Lj1g0017366 Lotus japonicus HOM05D003616 ORTHO05D004289 9.3e-52 206.8 116 87.9
Lalb_Chr08g0246201 Lupinus albus HOM05D003616 ORTHO05D004289 9.3e-52 206.8 119 87.4
VMungo1309G2159 Vigna mungo HOM05D003616 ORTHO05D004289 3.0e-50 201.8 112 87.5
Glyma.04G023200 Glycine max HOM05D003616 ORTHO05D004289 3.9e-50 201.4 112 86.6
arahy.Tifrunner.gnm1.ann1.MX1HG7 Arachis hypogaea HOM05D003616 ORTHO05D004289 1.1e-49 199.9 119 82.4
arahy.Tifrunner.gnm1.ann1.TXJ4LD Arachis hypogaea HOM05D003616 ORTHO05D004289 1.1e-49 199.9 119 82.4
Phvul.009G009900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 4.3e-49 198.0 112 87.5
GSVIVG01009954001 Vitis vinifera HOM05D003616 ORTHO05D004289 1.4e-47 193.0 107 86.0
FAN27G0470 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.2e-46 189.9 108 84.3
FvH4_2g38150 Fragaria vesca HOM05D003616 ORTHO05D004289 2.0e-46 189.1 108 84.3
RcHm_v2.0_Chr6g0303331 Rosa chinensis HOM05D003616 ORTHO05D004289 2.6e-46 188.7 108 84.3
MD08G1010100 Malus domestica HOM05D003616 ORTHO05D004289 7.6e-46 187.2 107 82.2
FAN15G3669 Fragaria x ananassa HOM05D003616 ORTHO05D004289 9.9e-46 186.8 108 83.3
Potri.005G242500 Populus trichocarpa HOM05D003616 ORTHO05D004289 2.9e-45 185.3 107 82.2
vmacro07569 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 4.9e-45 184.5 113 78.8
Cfa013983 Carpinus fangiana HOM05D003616 ORTHO05D004289 1.9e-44 182.6 114 78.1
CiPaw.07G146600 Carya illinoinensis HOM05D003616 ORTHO05D004289 1.9e-44 182.6 107 79.4
Prupe.1G362400 Prunus persica HOM05D003616 ORTHO05D004289 1.9e-44 182.6 107 80.4
Lj4A21T62 Lonicera japonica HOM05D003616 ORTHO05D004289 3.2e-44 181.8 109 79.8
Rhsim06G0018600 Rhododendron simsii HOM05D003616 ORTHO05D004289 3.2e-44 181.8 109 79.8
Sc02g0008690 Simmondsia chinensis HOM05D003616 ORTHO05D004289 3.2e-44 181.8 107 79.4
CSS0016648 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 4.2e-44 181.4 107 80.4
Cc10_g01410 Coffea canephora HOM05D003616 ORTHO05D004289 4.2e-44 181.4 107 80.4
Eucgr.H00953 Eucalyptus grandis HOM05D003616 ORTHO05D004289 5.4e-44 181.0 106 80.2
Eucgr.H00955 Eucalyptus grandis HOM05D003616 ORTHO05D004289 5.4e-44 181.0 106 80.2
Sabra05G0187700 Salix brachista HOM05D003616 ORTHO05D004289 5.4e-44 181.0 108 78.7
MELO3C011352.2 Cucumis melo HOM05D003616 ORTHO05D004289 7.1e-44 180.6 108 75.9
Manes.18G011100 Manihot esculenta HOM05D003616 ORTHO05D004289 7.1e-44 180.6 107 80.4
COL.COLO4_26116 Corchorus olitorius HOM05D003616 ORTHO05D004289 9.3e-44 180.3 109 78.9
CsaV3_2G024290 Cucumis sativus L. HOM05D003616 ORTHO05D004289 9.3e-44 180.3 108 75.9
Dinv39539 Davidia involucrata HOM05D003616 ORTHO05D004289 1.2e-43 179.9 107 78.5
Duzib093G0398 Durio zibethinus HOM05D003616 ORTHO05D004289 1.2e-43 179.9 109 78.0
Atru.chr13.252 Acer truncatum HOM05D003616 ORTHO05D004289 1.6e-43 179.5 109 78.0
TAR629G1297 Trochodendron aralioides HOM05D003616 ORTHO05D004289 4.6e-43 177.9 116 73.3
MSTRG.24236 Avicennia marina HOM05D003616 ORTHO05D004289 6.0e-43 177.6 107 79.4
Oeu007366.1 Olea europaea HOM05D003616 ORTHO05D004289 6.0e-43 177.6 107 78.5
QL02p012220 Quercus lobata HOM05D003616 ORTHO05D004289 6.0e-43 177.6 107 77.6
Manes.14G171500 Manihot esculenta HOM05D003616 ORTHO05D004289 7.9e-43 177.2 107 77.6
Thecc.08G048000 Theobroma cacao HOM05D003616 ORTHO05D004289 1.0e-42 176.8 109 77.1
Ciclev10008944m.g Citrus clementina HOM05D003616 ORTHO05D004289 1.3e-42 176.4 114 74.6
Ciclev10001861m.g Citrus clementina HOM05D003616 ORTHO05D004289 1.8e-42 176.0 109 79.8
HanXRQChr14g0455291 Helianthus annuus HOM05D003616 ORTHO05D004289 2.3e-42 175.6 114 75.4
GSVIVG01008442001 Vitis vinifera HOM05D003616 ORTHO05D004289 2.3e-42 175.6 114 74.6
Oeu026133.1 Olea europaea HOM05D003616 ORTHO05D004289 3.0e-42 175.3 113 76.1
Sed0022788 Sechium edule HOM05D003616 ORTHO05D004289 3.9e-42 174.9 107 74.8
Haze_22668 Corylus avellana HOM05D003616 ORTHO05D004289 5.1e-42 174.5 107 78.5
SGA_v2.0_scaffold25G11209 Striga asiatica HOM05D003616 ORTHO05D004289 5.1e-42 174.5 109 76.1
Gohir.A05G184900 Gossypium hirsutum HOM05D003616 ORTHO05D004289 6.7e-42 174.1 110 77.3
Gohir.D05G187700 Gossypium hirsutum HOM05D003616 ORTHO05D004289 6.7e-42 174.1 110 77.3
TWI12G0315 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 6.7e-42 174.1 109 76.1
Cc02_g37150 Coffea canephora HOM05D003616 ORTHO05D004289 8.7e-42 173.7 114 75.4
Gorai.009G193000 Gossypium raimondii HOM05D003616 ORTHO05D004289 8.7e-42 173.7 110 77.3
Hma1.2p1_0023F.1_g015660 Hydrangea macrophylla HOM05D003616 ORTHO05D004289 8.7e-42 173.7 107 75.7
SGA_v2.0_scaffold92G28201 Striga asiatica HOM05D003616 ORTHO05D004289 8.7e-42 173.7 107 77.6
CANSAT25G0701 Cannabis sativa HOM05D003616 ORTHO05D004289 1.1e-41 173.3 107 77.6
Cpa.g.sc3.395 Carica papaya HOM05D003616 ORTHO05D004289 1.5e-41 172.9 113 73.5
CiPaw.15G143500 Carya illinoinensis HOM05D003616 ORTHO05D004289 1.5e-41 172.9 114 72.8
Nn4g24400 Nelumbo nucifera HOM05D003616 ORTHO05D004289 1.5e-41 172.9 115 73.0
RcHm_v2.0_Chr7g0178351 Rosa chinensis HOM05D003616 ORTHO05D004289 1.5e-41 172.9 116 71.6
THA.LOC104798670 Tarenaya hassleriana HOM05D003616 ORTHO05D004289 1.5e-41 172.9 109 75.2
arahy.Tifrunner.gnm1.ann1.0SP0C0 Arachis hypogaea HOM05D003616 ORTHO05D004289 1.9e-41 172.6 115 71.3
arahy.Tifrunner.gnm1.ann1.YQ88M5 Arachis hypogaea HOM05D003616 ORTHO05D004289 1.9e-41 172.6 115 71.3
Nn3g18380 Nelumbo nucifera HOM05D003616 ORTHO05D004289 1.9e-41 172.6 108 76.9
Solyc04g081740.3 Solanum lycopersicum HOM05D003616 ORTHO05D004289 1.9e-41 172.6 107 77.6
Sopen04g035370 Solanum pennellii HOM05D003616 ORTHO05D004289 1.9e-41 172.6 107 77.6
Thecc.03G055800 Theobroma cacao HOM05D003616 ORTHO05D004289 1.9e-41 172.6 114 72.8
AUR62013931 Chenopodium quinoa HOM05D003616 ORTHO05D004289 2.5e-41 172.2 107 74.8
Duzib084G0113 Durio zibethinus HOM05D003616 ORTHO05D004289 2.5e-41 172.2 114 72.8
Lj5A158G70 Lonicera japonica HOM05D003616 ORTHO05D004289 2.5e-41 172.2 107 75.7
Potri.015G038300 Populus trichocarpa HOM05D003616 ORTHO05D004289 2.5e-41 172.2 114 72.8
Actinidia15440 Actinidia chinensis HOM05D003616 ORTHO05D004289 3.3e-41 171.8 107 75.7
CANSAT80G0515 Cannabis sativa HOM05D003616 ORTHO05D004289 3.3e-41 171.8 116 70.7
FAN08G3458 Fragaria x ananassa HOM05D003616 ORTHO05D004289 3.3e-41 171.8 116 70.7
Potri.012G046600 Populus trichocarpa HOM05D003616 ORTHO05D004289 3.3e-41 171.8 114 71.9
QL10p029638 Quercus lobata HOM05D003616 ORTHO05D004289 3.3e-41 171.8 114 71.1
BcaC03g16480 Brassica carinata HOM05D003616 ORTHO05D004289 4.3e-41 171.4 109 75.2
A02p27080 Brassica napus HOM05D003616 ORTHO05D004289 4.3e-41 171.4 109 75.2
C02p42910 Brassica napus HOM05D003616 ORTHO05D004289 4.3e-41 171.4 109 75.2
BolC2t10330H Brassica oleracea HOM05D003616 ORTHO05D004289 4.3e-41 171.4 109 75.2
BraA02t07726Z Brassica rapa HOM05D003616 ORTHO05D004289 4.3e-41 171.4 109 75.2
FAN04G2471 Fragaria x ananassa HOM05D003616 ORTHO05D004289 4.3e-41 171.4 116 70.7
HanXRQChr07g0204451 Helianthus annuus HOM05D003616 ORTHO05D004289 4.3e-41 171.4 111 72.1
TAR625G0790 Trochodendron aralioides HOM05D003616 ORTHO05D004289 4.3e-41 171.4 114 71.9
Actinidia28138 Actinidia chinensis HOM05D003616 ORTHO05D004289 5.6e-41 171.0 114 71.9
CAN.G311.50 Capsicum annuum HOM05D003616 ORTHO05D004289 5.6e-41 171.0 104 78.8
FvH4_5g17390 Fragaria vesca HOM05D003616 ORTHO05D004289 5.6e-41 171.0 116 70.7
FAN18G4023 Fragaria x ananassa HOM05D003616 ORTHO05D004289 5.6e-41 171.0 116 70.7
Carub.0008s0714 Capsella rubella HOM05D003616 ORTHO05D004289 7.4e-41 170.6 109 74.3
Gohir.D02G121200 Gossypium hirsutum HOM05D003616 ORTHO05D004289 7.4e-41 170.6 114 71.9
Gorai.005G133000 Gossypium raimondii HOM05D003616 ORTHO05D004289 7.4e-41 170.6 114 71.9
MD14G1236600 Malus domestica HOM05D003616 ORTHO05D004289 7.4e-41 170.6 116 70.7
SGA_v2.0_scaffold19G08556 Striga asiatica HOM05D003616 ORTHO05D004289 7.4e-41 170.6 107 75.7
Aqoxy2G03601 Aquilegia oxysepala HOM05D003616 ORTHO05D004289 9.6e-41 170.2 107 74.8
Thhalv10027850m.g Eutrema salsugineum HOM05D003616 ORTHO05D004289 9.6e-41 170.2 109 74.3
Lsat_1_v5_gn_2_108180 Lactuca sativa HOM05D003616 ORTHO05D004289 9.6e-41 170.2 114 72.8
AT5G42150 Arabidopsis thaliana HOM05D003616 ORTHO05D004289 1.3e-40 169.9 116 71.6
Glyma.07G102200 Glycine max HOM05D003616 ORTHO05D004289 1.3e-40 169.9 114 71.9
Nitab4.5_0006505g0020 Nicotiana tabacum HOM05D003616 ORTHO05D004289 1.3e-40 169.9 114 72.8
AL8G19670 Arabidopsis lyrata HOM05D003616 ORTHO05D004289 1.6e-40 169.5 109 73.4
AUR62040567 Chenopodium quinoa HOM05D003616 ORTHO05D004289 1.6e-40 169.5 107 73.8
MELO3C017361.2 Cucumis melo HOM05D003616 ORTHO05D004289 1.6e-40 169.5 114 71.9
CsaV3_1G004390 Cucumis sativus L. HOM05D003616 ORTHO05D004289 1.6e-40 169.5 114 71.9
Migut.C00863 Erythranthe guttata HOM05D003616 ORTHO05D004289 1.6e-40 169.5 107 75.7
Eucgr.B01000 Eucalyptus grandis HOM05D003616 ORTHO05D004289 1.6e-40 169.5 114 70.2
PSO700G0251 Papaver somniferum HOM05D003616 ORTHO05D004289 1.6e-40 169.5 106 74.5
BcaB04g19405 Brassica carinata HOM05D003616 ORTHO05D004289 2.1e-40 169.1 109 73.4
CSS0013276 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 2.1e-40 169.1 114 71.9
Sabra12G0032700 Salix brachista HOM05D003616 ORTHO05D004289 2.1e-40 169.1 114 71.1
Atru.chr9.1732 Acer truncatum HOM05D003616 ORTHO05D004289 2.8e-40 168.7 114 70.2
Haze_18855 Corylus avellana HOM05D003616 ORTHO05D004289 2.8e-40 168.7 114 70.2
Migut.N03175 Erythranthe guttata HOM05D003616 ORTHO05D004289 2.8e-40 168.7 107 73.8
Glyma.09G177000 Glycine max HOM05D003616 ORTHO05D004289 2.8e-40 168.7 114 71.9
Gohir.A03G092600 Gossypium hirsutum HOM05D003616 ORTHO05D004289 2.8e-40 168.7 114 71.1
Lalb_Chr22g0353551 Lupinus albus HOM05D003616 ORTHO05D004289 2.8e-40 168.7 112 72.3
PGR083G0078 Punica granatum HOM05D003616 ORTHO05D004289 2.8e-40 168.7 114 71.9
Hund05170 Selenicereus undatus HOM05D003616 ORTHO05D004289 2.8e-40 168.7 107 74.8
Cfa019655 Carpinus fangiana HOM05D003616 ORTHO05D004289 3.7e-40 168.3 114 70.2
Prupe.5G233700 Prunus persica HOM05D003616 ORTHO05D004289 3.7e-40 168.3 114 70.2
Sp7g08670 Schrenkiella parvula HOM05D003616 ORTHO05D004289 3.7e-40 168.3 109 73.4
Lsat_1_v5_gn_8_25101 Lactuca sativa HOM05D003616 ORTHO05D004289 4.8e-40 167.9 107 73.8
Lj2g0015525 Lotus japonicus HOM05D003616 ORTHO05D004289 4.8e-40 167.9 114 70.2
MBI04_g06229_MAGBIO Magnolia biondii HOM05D003616 ORTHO05D004289 4.8e-40 167.9 107 74.8
Sed0005025 Sechium edule HOM05D003616 ORTHO05D004289 4.8e-40 167.9 114 70.2
Ca_25333_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 6.2e-40 167.5 114 69.3
ClCG06G014280 Citrullus lanatus HOM05D003616 ORTHO05D004289 6.2e-40 167.5 114 70.2
Dinv17550 Davidia involucrata HOM05D003616 ORTHO05D004289 6.2e-40 167.5 114 71.1
Peaxi162Scf00860g00047 Petunia axillaris HOM05D003616 ORTHO05D004289 6.2e-40 167.5 114 71.1
Psat1g033600 Pisum sativum HOM05D003616 ORTHO05D004289 8.1e-40 167.2 114 69.3
CDE05G1955 Ceratophyllum demersum HOM05D003616 ORTHO05D004289 1.1e-39 166.8 114 71.1
Medtr6g069420 Medicago truncatula HOM05D003616 ORTHO05D004289 1.1e-39 166.8 114 69.3
PSO541G0876 Papaver somniferum HOM05D003616 ORTHO05D004289 1.1e-39 166.8 114 70.2
Phvul.004G150900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 1.1e-39 166.8 114 69.3
Lalb_Chr14g0370571 Lupinus albus HOM05D003616 ORTHO05D004289 1.8e-39 166.0 114 69.3
EL10Ac1g02157 Beta vulgaris HOM05D003616 ORTHO05D004289 2.4e-39 165.6 107 70.1
HanXRQChr06g0183781 Helianthus annuus HOM05D003616 ORTHO05D004289 2.4e-39 165.6 98 80.6
Lsat_1_v5_gn_2_9140 Lactuca sativa HOM05D003616 ORTHO05D004289 2.4e-39 165.6 99 78.8
PSO170G1220 Papaver somniferum HOM05D003616 ORTHO05D004289 2.4e-39 165.6 106 74.5
PSO675G9362 Papaver somniferum HOM05D003616 ORTHO05D004289 2.4e-39 165.6 114 70.2
TPR.G8619 Trifolium pratense HOM05D003616 ORTHO05D004289 2.4e-39 165.6 114 69.3
TWI60G1662 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 3.1e-39 165.2 114 67.5
Aa31LG9G12310 Aethionema arabicum HOM05D003616 ORTHO05D004289 4.0e-39 164.9 107 72.9
CARHR284720 Cardamine hirsuta HOM05D003616 ORTHO05D004289 4.0e-39 164.9 109 71.6
unitig_748.g7720 Utricularia gibba HOM05D003616 ORTHO05D004289 4.0e-39 164.9 109 73.4
SalBow8G4338 Salvia bowleyana HOM05D003616 ORTHO05D004289 5.3e-39 164.5 109 69.7
VMungo0464G1067 Vigna mungo HOM05D003616 ORTHO05D004289 9.0e-39 163.7 114 69.3
TWI15G0798 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 1.2e-38 163.3 114 67.5
HPP92_015015 Vanilla planifolia HOM05D003616 ORTHO05D004289 1.2e-38 163.3 120 70.0
Mapoly0126s0030 Marchantia polymorpha HOM05D003616 ORTHO05D004289 2.0e-38 162.5 114 69.3
PGR031G0359 Punica granatum HOM05D003616 ORTHO05D004289 2.6e-38 162.2 106 72.6
DCAR_003546 Daucus carota HOM05D003616 ORTHO05D004289 4.5e-38 161.4 114 68.4
Sed0021008 Sechium edule HOM05D003616 ORTHO05D004289 5.8e-38 161.0 114 67.5
ATR0626G339 Amborella trichopoda HOM05D003616 ORTHO05D004289 1.3e-37 159.8 116 66.4
ECA238G4543 Erigeron canadensis HOM05D003616 ORTHO05D004289 2.2e-37 159.1 98 78.6
Os04g0244400 Oryza sativa ssp. japonica HOM05D003616 ORTHO05D004289 3.8e-37 158.3 109 67.0
ClCG08G014130 Citrullus lanatus HOM05D003616 ORTHO05D004289 2.4e-36 155.6 95 75.8
ATR0180G023 Amborella trichopoda HOM05D003616 ORTHO05D004289 4.2e-36 154.8 118 65.3
Oeu051168.1 Olea europaea HOM05D003616 ORTHO05D004289 2.1e-35 152.5 89 80.9
CBR_g28548 Chara braunii HOM05D003616 ORTHO05D004289 2.7e-35 152.1 116 62.9
SMO140G0111 Selaginella moellendorffii HOM05D003616 ORTHO05D004289 3.5e-35 151.8 108 67.6
SEGI_35058 Sequoiadendron giganteum HOM05D003616 ORTHO05D004289 6.0e-35 151.0 116 62.1
Pp3c22_13980 Physcomitrium patens HOM05D003616 ORTHO05D004289 7.9e-35 150.6 116 61.2
Ah.11g040000 Amaranthus hybridus HOM05D003616 ORTHO05D004289 3.9e-34 148.3 91 78.0
Pp3c19_15500 Physcomitrium patens HOM05D003616 ORTHO05D004289 1.1e-33 146.7 112 59.8
Zm00001eb086680 Zea mays HOM05D003616 ORTHO05D004289 1.5e-33 146.4 140 53.6
Sabra15G0037200 Salix brachista HOM05D003616 ORTHO05D004289 8.2e-32 140.6 188 44.7
VMungo1309G0063 Vigna mungo HOM05D003616 ORTHO05D004289 6.9e-31 137.5 100 66.0
VMungo1309G1258 Vigna mungo HOM05D003616 ORTHO05D004289 6.5e-29 131.0 100 62.0
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 6.0e-27 124.4 87 71.3
MD15G1010000 Malus domestica HOM05D003616 ORTHO05D004289 6.0e-27 124.4 107 60.7
vmacro17781 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 1.3e-21 106.7 80 66.2
PRCOL_00004876 Prasinoderma coloniale HOM05D003616 ORTHO05D004289 8.8e-18 94.0 110 46.4
Prupe.1G007300 Prunus persica HOM05D003616 ORTHO05D335316 1.7e-16 89.7 74 60.8
Cre07.g319100 Chlamydomonas reinhardtii HOM05D003616 ORTHO05D004289 3.1e-15 85.5 104 44.2
MCO10G259 Micromonas commoda HOM05D003616 ORTHO05D004289 1.5e-14 83.2 122 39.3
Lj9A420T36 Lonicera japonica HOM05D003616 ORTHO05D004289 2.5e-12 75.9 51 68.6
Lsat_1_v5_gn_6_77041 Lactuca sativa HOM05D003616 ORTHO05D232058 4.8e-08 61.6 46 54.3


User provided reference genes

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