Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24298 Trifolium pratense HOM05D000082 ORTHO05D000038 3.3e-249 864.8 491 100.0
Medtr7g074170 Medicago truncatula HOM05D000082 ORTHO05D000038 7.4e-185 651.0 534 67.4
Ca_07797_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 1.1e-169 600.5 556 63.3
Psat3g117600 Pisum sativum HOM05D000082 ORTHO05D000038 4.5e-158 562.0 592 55.9
Glyma.09G271200 Glycine max HOM05D000082 ORTHO05D000038 1.8e-154 550.1 564 56.0
Glyma.18G218200 Glycine max HOM05D000082 ORTHO05D000038 2.3e-149 533.1 573 53.2
Phvul.008G078700 Phaseolus vulgaris HOM05D000082 ORTHO05D000038 4.2e-148 528.9 593 51.3
VMungo1383G1936 Vigna mungo HOM05D000082 ORTHO05D000038 9.2e-143 511.1 590 53.1
Lj1g0014143 Lotus japonicus HOM05D000082 ORTHO05D000038 4.9e-136 488.8 565 52.6
Lalb_Chr03g0043911 Lupinus albus HOM05D000082 ORTHO05D000038 9.6e-100 368.2 565 45.5
Haze_21210 Corylus avellana HOM05D000082 ORTHO05D000038 1.3e-80 304.7 554 39.2
Manes.09G121100 Manihot esculenta HOM05D000082 ORTHO05D000038 6.5e-80 302.4 563 40.5
Cfa016995 Carpinus fangiana HOM05D000082 ORTHO05D000038 1.1e-79 301.6 543 38.5
TWI74G1162 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 3.2e-79 300.1 572 39.5
CSS0002713 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 2.1e-78 297.4 567 41.4
Dinv16933 Davidia involucrata HOM05D000082 ORTHO05D000038 1.9e-76 290.8 551 38.8
CiPaw.09G223900 Carya illinoinensis HOM05D000082 ORTHO05D000038 5.7e-76 289.3 538 39.8
MD04G1178400 Malus domestica HOM05D000082 ORTHO05D000038 2.2e-75 287.3 593 38.6
Prupe.6G298400 Prunus persica HOM05D000082 ORTHO05D000038 1.1e-74 285.0 583 39.5
Thecc.04G146700 Theobroma cacao HOM05D000082 ORTHO05D000038 9.0e-74 282.0 529 38.4
RcHm_v2.0_Chr3g0459741 Rosa chinensis HOM05D000082 ORTHO05D000038 2.0e-73 280.8 544 38.6
MD12G1193900 Malus domestica HOM05D000082 ORTHO05D000038 1.0e-72 278.5 569 37.3
Rhsim05G0234000 Rhododendron simsii HOM05D000082 ORTHO05D000038 1.3e-72 278.1 555 39.8
Lj3P939T83 Lonicera japonica HOM05D000082 ORTHO05D000038 1.7e-72 277.7 521 37.8
QL07p031384 Quercus lobata HOM05D000082 ORTHO05D000038 1.7e-72 277.7 556 38.7
Actinidia29007 Actinidia chinensis HOM05D000082 ORTHO05D000038 3.2e-71 273.5 579 38.2
FAN02G2107 Fragaria x ananassa HOM05D000082 ORTHO05D000038 3.2e-71 273.5 624 35.6
Gorai.005G002000 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.5e-71 272.7 531 38.0
Duzib151G0874 Durio zibethinus HOM05D000082 ORTHO05D000038 1.2e-70 271.6 529 37.2
CSS0018145 Camellia sinensis var. sinensis HOM05D000082 ORTHO05D000038 4.6e-70 269.6 567 39.2
Gohir.D02G001500 Gossypium hirsutum HOM05D000082 ORTHO05D000038 6.1e-70 269.2 533 38.5
FAN14G1480 Fragaria x ananassa HOM05D000082 ORTHO05D000038 7.9e-70 268.9 625 35.0
FAN05G2246 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.8e-69 267.7 624 35.1
FAN09G1965 Fragaria x ananassa HOM05D000082 ORTHO05D000038 1.8e-69 267.7 624 35.4
FvH4_6g09350 Fragaria vesca HOM05D000082 ORTHO05D000038 2.3e-69 267.3 625 35.0
vmacro20398 Vaccinium macrocarpon HOM05D000082 ORTHO05D000038 3.9e-69 266.5 552 38.6
Cpa.g.sc1460.1 Carica papaya HOM05D000082 ORTHO05D000038 1.5e-68 264.6 553 37.4
ClCG04G006120 Citrullus lanatus HOM05D000082 ORTHO05D000038 1.3e-67 261.5 571 33.3
Hund19735 Selenicereus undatus HOM05D000082 ORTHO05D000038 1.7e-67 261.2 510 37.1
Gohir.A02G001200 Gossypium hirsutum HOM05D000082 ORTHO05D000038 4.8e-67 259.6 531 36.9
Nn5g26771 Nelumbo nucifera HOM05D000082 ORTHO05D000038 1.8e-66 257.7 566 35.5
Potri.006G112100 Populus trichocarpa HOM05D000082 ORTHO05D000038 1.2e-65 255.0 554 36.5
EL10Ac7g17144 Beta vulgaris HOM05D000082 ORTHO05D000038 7.7e-65 252.3 534 35.2
Eucgr.K01302 Eucalyptus grandis HOM05D000082 ORTHO05D000038 2.9e-64 250.4 567 35.4
Sabra06G0087400 Salix brachista HOM05D000082 ORTHO05D000038 4.2e-63 246.5 555 34.8
TAR623G1503 Trochodendron aralioides HOM05D000082 ORTHO05D000038 1.2e-62 245.0 566 36.2
Dinv25371 Davidia involucrata HOM05D000082 ORTHO05D000038 7.9e-62 242.3 556 36.9
PSO339G4294 Papaver somniferum HOM05D000082 ORTHO05D000038 1.5e-60 238.0 604 32.6
PGR031G2862 Punica granatum HOM05D000082 ORTHO05D000038 4.4e-60 236.5 569 34.3
Sc20g0007300 Simmondsia chinensis HOM05D000082 ORTHO05D000038 9.7e-60 235.3 539 34.1
PSO384G3041 Papaver somniferum HOM05D000082 ORTHO05D000038 1.3e-59 235.0 603 33.7
Sc20g0007570 Simmondsia chinensis HOM05D000082 ORTHO05D000038 1.7e-59 234.6 539 34.0
Hma1.2p1_0174F.1_g076580 Hydrangea macrophylla HOM05D000082 ORTHO05D000038 1.1e-58 231.9 585 33.5
MELO3C025263.2 Cucumis melo HOM05D000082 ORTHO05D000038 5.3e-58 229.6 553 32.5
Atru.chr8.57 Acer truncatum HOM05D000082 ORTHO05D000038 7.7e-57 225.7 610 32.3
Nitab4.5_0000195g0030 Nicotiana tabacum HOM05D000082 ORTHO05D000038 1.7e-56 224.6 544 33.5
AUR62029811 Chenopodium quinoa HOM05D000082 ORTHO05D000038 3.8e-56 223.4 550 32.7
CsaV3_4G027440 Cucumis sativus L. HOM05D000082 ORTHO05D000038 3.8e-56 223.4 556 32.7
Sed0005682 Sechium edule HOM05D000082 ORTHO05D000038 5.0e-56 223.0 546 31.5
THA.LOC104823336 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 8.5e-56 222.2 543 32.0
Sabra04G0157900 Salix brachista HOM05D000082 ORTHO05D000038 1.5e-55 221.5 563 33.0
Aa31LG5G11310 Aethionema arabicum HOM05D000082 ORTHO05D000038 7.2e-55 219.2 539 32.5
Aqoxy2G00708 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 7.2e-55 219.2 575 31.8
Oeu026927.2 Olea europaea HOM05D000082 ORTHO05D000038 9.4e-55 218.8 550 33.5
AL6G10050 Arabidopsis lyrata HOM05D000082 ORTHO05D000038 4.7e-54 216.5 512 32.6
THA.LOC104816149 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 1.0e-53 215.3 536 33.4
AT5G01980 Arabidopsis thaliana HOM05D000082 ORTHO05D000038 2.3e-53 214.2 524 32.8
Ciclev10013556m.g Citrus clementina HOM05D000082 ORTHO05D000038 1.1e-52 211.8 468 37.0
MBI03_g36293_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 1.5e-52 211.5 562 32.0
Peaxi162Scf00732g00009 Petunia axillaris HOM05D000082 ORTHO05D000038 7.5e-52 209.1 543 32.2
AUR62006455 Chenopodium quinoa HOM05D000082 ORTHO05D000038 1.1e-50 205.3 536 32.1
Nitab4.5_0004009g0050 Nicotiana tabacum HOM05D000082 ORTHO05D000038 9.1e-50 202.2 498 34.1
Thhalv10015834m.g Eutrema salsugineum HOM05D000082 ORTHO05D000038 1.2e-49 201.8 508 31.9
CARHR212330 Cardamine hirsuta HOM05D000082 ORTHO05D000038 2.2e-48 197.6 516 31.2
Carub.0024s0006 Capsella rubella HOM05D000082 ORTHO05D000038 5.0e-48 196.4 508 31.5
DCAR_015321 Daucus carota HOM05D000082 ORTHO05D000038 4.7e-46 189.9 574 33.3
Sp1g38040 Schrenkiella parvula HOM05D000082 ORTHO05D000038 6.1e-46 189.5 519 31.4
CANSAT11G1382 Cannabis sativa HOM05D000082 ORTHO05D000038 5.7e-44 183.0 559 30.1
ECA247G2727 Erigeron canadensis HOM05D000082 ORTHO05D000038 5.7e-44 183.0 507 31.2
HanXRQChr15g0464551 Helianthus annuus HOM05D000082 ORTHO05D000038 1.8e-42 177.9 496 31.0
PGSC0003DMG400027763 Solanum tuberosum HOM05D000082 ORTHO05D000038 1.6e-38 164.9 513 30.6
Migut.J00008 Erythranthe guttata HOM05D000082 ORTHO05D000038 3.6e-38 163.7 524 30.3
HPP92_014356 Vanilla planifolia HOM05D000082 ORTHO05D000038 3.6e-38 163.7 520 29.8
Lsat_1_v5_gn_9_39880 Lactuca sativa HOM05D000082 ORTHO05D000038 2.3e-37 161.0 499 31.7
Oeu027181.1 Olea europaea HOM05D000082 ORTHO05D000038 2.2e-35 154.5 507 29.8
CDE04G2410 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 6.3e-35 152.9 539 29.1
MSTRG.5479 Avicennia marina HOM05D000082 ORTHO05D000038 7.0e-34 149.4 306 35.3
ATR1127G161 Amborella trichopoda HOM05D000082 ORTHO05D000038 9.2e-34 149.1 570 27.7
BcaB04g17230 Brassica carinata HOM05D000082 ORTHO05D000038 2.7e-33 147.5 493 28.0
HanXRQChr10g0286201 Helianthus annuus HOM05D000082 ORTHO05D000038 1.1e-31 142.1 411 32.1
Os11g0119200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 2.1e-30 137.9 522 27.2
ECA172G0001 Erigeron canadensis HOM05D000082 ORTHO05D000038 1.0e-29 135.6 326 32.8
A08p03020 Brassica napus HOM05D000082 ORTHO05D000038 3.0e-29 134.0 501 27.7
BraA08t32336Z Brassica rapa HOM05D000082 ORTHO05D000038 4.0e-29 133.7 501 27.9
BcaB04g17232 Brassica carinata HOM05D000082 ORTHO05D000038 6.8e-29 132.9 387 31.5
BcaC01g01252 Brassica carinata HOM05D000082 ORTHO05D000038 6.8e-29 132.9 498 28.1
C03p89800 Brassica napus HOM05D000082 ORTHO05D000038 6.8e-29 132.9 498 28.1
BolC3t21302H Brassica oleracea HOM05D000082 ORTHO05D000038 2.0e-28 131.3 498 28.5
Zm00001eb195510 Zea mays HOM05D000082 ORTHO05D000038 3.4e-28 130.6 476 29.6
Os12g0118700 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 5.7e-28 129.8 524 26.0
Potri.016G141600 Populus trichocarpa HOM05D000082 ORTHO05D000038 3.7e-27 127.1 359 30.6
GSVIVG01029854001 Vitis vinifera HOM05D000082 ORTHO05D000038 7.8e-25 119.4 231 36.8
CDE06G2707 Ceratophyllum demersum HOM05D000082 ORTHO05D000038 5.0e-24 116.7 256 34.4
RcHm_v2.0_Chr2g0091181 Rosa chinensis HOM05D000082 ORTHO05D000038 9.2e-18 95.9 77 58.4
unitig_22.g6622 Utricularia gibba HOM05D000082 ORTHO05D000038 1.3e-16 92.0 424 25.7
SEGI_01980 Sequoiadendron giganteum HOM05D000082 ORTHO05D000038 3.1e-13 80.9 64 59.4
SGA_v2.0_scaffold37G14579 Striga asiatica HOM05D000082 ORTHO05D000038 3.1e-13 80.9 490 24.7
AagrBONN_evm.TU.Sc2ySwM_368.1483 Anthoceros agrestis HOM05D000082 ORTHO05D000038 1.1e-10 72.4 67 52.2
Mapoly0039s0011 Marchantia polymorpha HOM05D000082 ORTHO05D000038 2.4e-10 71.2 81 46.9
CBR_g23334 Chara braunii HOM05D000082 ORTHO05D000038 2.1e-09 68.2 64 48.4
Ca_27675_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 6.0e-09 66.6 85 41.2
CBR_g49311 Chara braunii HOM05D000082 ORTHO05D000038 7.8e-09 66.2 64 45.3
Atru.chr9.637 Acer truncatum HOM05D000082 ORTHO05D000038 3.0e-08 64.3 207 24.2
Actinidia11477 Actinidia chinensis HOM05D000082 ORTHO05D000038 3.0e-08 64.3 151 37.1
PGR044G2376 Punica granatum HOM05D000082 ORTHO05D000038 3.0e-08 64.3 72 40.3
THA.LOC104806877 Tarenaya hassleriana HOM05D000082 ORTHO05D000038 3.0e-08 64.3 78 44.9
CBR_g23965 Chara braunii HOM05D000082 ORTHO05D000038 3.9e-08 63.9 67 43.3
Gohir.A03G072600 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.9e-08 63.9 73 38.4
Gohir.A13G095910 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.9e-08 63.9 84 34.5
Gohir.D03G099200 Gossypium hirsutum HOM05D000082 ORTHO05D000038 3.9e-08 63.9 78 38.5
Gorai.003G104200 Gossypium raimondii HOM05D000082 ORTHO05D000038 3.9e-08 63.9 78 38.5
Pp3c13_21890 Physcomitrium patens HOM05D000082 ORTHO05D000038 3.9e-08 63.9 69 44.9
Pp3c13_19370 Physcomitrium patens HOM05D000082 ORTHO05D000038 6.6e-08 63.2 69 44.9
Medtr6g079660 Medicago truncatula HOM05D000082 ORTHO05D000038 8.6e-08 62.8 72 40.3
Atru.chr13.269 Acer truncatum HOM05D000082 ORTHO05D000038 1.1e-07 62.4 65 49.2
COL.COLO4_28834 Corchorus olitorius HOM05D000082 ORTHO05D000038 1.1e-07 62.4 84 36.9
SEGI_21297 Sequoiadendron giganteum HOM05D000082 ORTHO05D000038 1.1e-07 62.4 114 32.5
TPR.G19882 Trifolium pratense HOM05D000082 ORTHO05D000038 1.1e-07 62.4 85 37.6
Psat1g121640 Pisum sativum HOM05D000082 ORTHO05D000038 1.5e-07 62.0 72 41.7
MSTRG.3381 Avicennia marina HOM05D000082 ORTHO05D000038 1.9e-07 61.6 81 40.7
Pp3c3_13100 Physcomitrium patens HOM05D000082 ORTHO05D000038 1.9e-07 61.6 69 43.5
AagrBONN_evm.TU.Sc2ySwM_368.37 Anthoceros agrestis HOM05D000082 ORTHO05D000038 3.3e-07 60.8 69 42.0
SMO119G0161 Selaginella moellendorffii HOM05D000082 ORTHO05D000038 3.3e-07 60.8 56 50.0
CAN.G1076.32 Capsicum annuum HOM05D000082 ORTHO05D000038 4.3e-07 60.5 67 47.8
Migut.N03169 Erythranthe guttata HOM05D000082 ORTHO05D000038 4.3e-07 60.5 65 49.2
Manes.05G145800 Manihot esculenta HOM05D000082 ORTHO05D000038 4.3e-07 60.5 63 47.6
Cpa.g.sc26.313 Carica papaya HOM05D000082 ORTHO05D000038 5.6e-07 60.1 66 45.5
Mapoly0111s0022 Marchantia polymorpha HOM05D000082 ORTHO05D000038 5.6e-07 60.1 69 42.0
Oeu032846.1 Olea europaea HOM05D000082 ORTHO05D000038 5.6e-07 60.1 71 40.8
Prupe.5G211100 Prunus persica HOM05D000082 ORTHO05D000038 5.6e-07 60.1 79 34.2
SEGI_01397 Sequoiadendron giganteum HOM05D000082 ORTHO05D000038 5.6e-07 60.1 81 39.5
SEGI_40214 Sequoiadendron giganteum HOM05D000082 ORTHO05D000038 5.6e-07 60.1 81 39.5
CBR_g36486 Chara braunii HOM05D000082 ORTHO05D000038 7.3e-07 59.7 73 39.7
Ca_20753_v3 Cicer arietinum L. HOM05D000082 ORTHO05D000038 7.3e-07 59.7 93 37.6
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 7.3e-07 59.7 74 36.5
arahy.Tifrunner.gnm1.ann1.V9ZUVQ Arachis hypogaea HOM05D000082 ORTHO05D000038 9.5e-07 59.3 79 34.2
Manes.02G061800 Manihot esculenta HOM05D000082 ORTHO05D000038 9.5e-07 59.3 100 39.0
Medtr6g016350 Medicago truncatula HOM05D000082 ORTHO05D000038 9.5e-07 59.3 59 45.8
SGA_v2.0_scaffold47G17499 Striga asiatica HOM05D000082 ORTHO05D000038 9.5e-07 59.3 82 41.5
ECA246G0113 Erigeron canadensis HOM05D000082 ORTHO05D000038 1.2e-06 58.9 67 41.8
Migut.E00686 Erythranthe guttata HOM05D000082 ORTHO05D000038 1.2e-06 58.9 98 35.7
Lj2g0010707 Lotus japonicus HOM05D000082 ORTHO05D000038 1.2e-06 58.9 71 38.0
MBI15_g13729_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 1.2e-06 58.9 89 31.5
MBI15_g24993_MAGBIO Magnolia biondii HOM05D000082 ORTHO05D000038 1.2e-06 58.9 89 31.5
Dinv34889 Davidia involucrata HOM05D000082 ORTHO05D000038 1.6e-06 58.5 63 39.7
HanXRQChr12g0380161 Helianthus annuus HOM05D000082 ORTHO05D000038 1.6e-06 58.5 106 32.1
Lj2g0011623 Lotus japonicus HOM05D000082 ORTHO05D000038 1.6e-06 58.5 85 37.6
SMO329G0041 Selaginella moellendorffii HOM05D000082 ORTHO05D000038 1.6e-06 58.5 55 52.7
TPR.G15945 Trifolium pratense HOM05D000082 ORTHO05D000038 1.6e-06 58.5 86 34.9
Aqoxy6G02256 Aquilegia oxysepala HOM05D000082 ORTHO05D000038 2.1e-06 58.2 65 46.2
arahy.Tifrunner.gnm1.ann1.Q3JRQN Arachis hypogaea HOM05D000082 ORTHO05D000038 2.1e-06 58.2 79 32.9
Eucgr.H00970 Eucalyptus grandis HOM05D000082 ORTHO05D000038 2.1e-06 58.2 84 41.7
HanXRQChr16g0503341 Helianthus annuus HOM05D000082 ORTHO05D000038 2.1e-06 58.2 78 42.3
SGA_v2.0_scaffold52G19047 Striga asiatica HOM05D000082 ORTHO05D000038 2.1e-06 58.2 68 44.1
TAR622G1312 Trochodendron aralioides HOM05D000082 ORTHO05D000038 2.1e-06 58.2 69 36.2
TAR371G0626 Trochodendron aralioides HOM05D000082 ORTHO05D000038 2.8e-06 57.8 81 34.6
Duzib068G1366 Durio zibethinus HOM05D000082 ORTHO05D000038 3.6e-06 57.4 84 34.5
PSO478G0192 Papaver somniferum HOM05D000082 ORTHO05D000038 3.6e-06 57.4 88 31.8
Prupe.5G243100 Prunus persica HOM05D000082 ORTHO05D000038 3.6e-06 57.4 71 40.8
RcHm_v2.0_Chr7g0177241 Rosa chinensis HOM05D000082 ORTHO05D000038 3.6e-06 57.4 71 40.8
PGSC0003DMG400031865 Solanum tuberosum HOM05D000082 ORTHO05D000038 3.6e-06 57.4 65 46.2
Oeu062194.1 Olea europaea HOM05D000082 ORTHO05D000038 4.7e-06 57.0 77 36.4
Sed0014849 Sechium edule HOM05D000082 ORTHO05D000038 4.7e-06 57.0 91 29.7
TAR371G0911 Trochodendron aralioides HOM05D000082 ORTHO05D000038 4.7e-06 57.0 70 40.0
HPP92_015159 Vanilla planifolia HOM05D000082 ORTHO05D000038 4.7e-06 57.0 78 38.5
TWI81G0924 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 6.2e-06 56.6 72 40.3
TAR371G0676 Trochodendron aralioides HOM05D000082 ORTHO05D000038 6.2e-06 56.6 81 33.3
Ah.01g012590 Amaranthus hybridus HOM05D000082 ORTHO05D000038 8.1e-06 56.2 88 36.4
Migut.H00571 Erythranthe guttata HOM05D000082 ORTHO05D000038 8.1e-06 56.2 79 36.7
Eucgr.H00641 Eucalyptus grandis HOM05D000082 ORTHO05D000038 8.1e-06 56.2 70 37.1
Eucgr.I02088 Eucalyptus grandis HOM05D000082 ORTHO05D000038 8.1e-06 56.2 73 37.0
PSO017G4357 Papaver somniferum HOM05D000082 ORTHO05D000038 8.1e-06 56.2 88 30.7
Sabra12G0025200 Salix brachista HOM05D000082 ORTHO05D000038 8.1e-06 56.2 67 40.3


User provided reference genes

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