Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 0.0e+00 1143.3 604 100.0
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 0.0e+00 1079.3 602 93.7
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.0e-309 1065.1 605 92.4
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 7.7e-301 1036.6 607 90.1
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.8e-295 1018.1 602 88.9
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.4e-294 1015.8 606 88.3
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.2e-293 1012.7 602 88.5
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 7.2e-291 1003.4 602 87.5
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 2.0e-288 995.3 602 86.5
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.8e-287 991.5 605 86.4
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 6.3e-287 990.3 605 86.3
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 8.3e-287 989.9 605 86.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.8e-286 988.8 605 86.4
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 9.8e-272 939.9 604 83.1
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 4.1e-270 934.5 598 80.8
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.3e-268 928.7 604 81.6
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 6.6e-268 927.2 596 81.0
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.1e-267 926.4 590 81.5
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 7.3e-267 923.7 591 81.7
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.5e-267 923.3 590 81.9
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 4.7e-266 921.0 602 81.7
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.1e-265 918.3 590 81.4
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.0e-265 917.9 601 79.7
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.6e-264 915.2 590 81.2
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.4e-264 914.8 590 80.8
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 4.4e-264 914.4 601 79.5
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 7.5e-264 913.7 590 79.8
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 7.5e-264 913.7 597 79.7
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.9e-263 911.8 590 80.5
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.2e-262 908.3 602 80.9
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 5.4e-262 907.5 601 79.2
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.9e-260 901.4 599 79.0
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 5.6e-259 897.5 602 78.4
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 2.1e-258 895.6 602 77.6
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.8e-258 895.2 592 78.9
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 3.6e-258 894.8 590 80.5
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.8e-257 892.5 598 77.1
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.0e-257 891.3 565 81.1
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 5.2e-257 891.0 590 78.8
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 2.6e-256 888.6 590 78.6
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 2.6e-256 888.6 597 77.7
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 4.4e-256 887.9 590 79.3
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.7e-255 885.9 592 78.0
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.2e-255 885.6 590 78.6
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 2.9e-255 885.2 592 78.0
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.1e-254 883.2 589 77.8
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.4e-254 882.9 598 76.9
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.9e-254 882.5 598 77.1
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.4e-254 880.9 598 76.4
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 7.1e-254 880.6 593 77.6
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.6e-253 879.4 596 77.0
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.8e-253 877.1 591 77.8
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.0e-252 876.7 700 68.3
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.6e-250 868.2 590 77.1
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 2.4e-249 865.5 593 76.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 5.2e-249 864.4 597 75.7
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 6.9e-249 864.0 590 75.6
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.2e-248 863.2 591 76.0
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 4.4e-248 861.3 634 71.6
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 5.8e-248 860.9 593 75.5
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.7e-247 859.4 598 75.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 2.2e-247 859.0 601 74.5
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 3.8e-247 858.2 593 75.4
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 6.4e-247 857.4 593 75.0
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 8.4e-247 857.1 594 74.7
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 8.4e-247 857.1 593 75.2
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.2e-245 853.2 590 76.4
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.1e-245 852.4 593 74.9
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 6.0e-245 850.9 592 74.7
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 7.8e-245 850.5 591 75.0
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.3e-244 849.7 593 75.0
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 5.1e-244 847.8 582 75.3
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 5.1e-244 847.8 592 74.7
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 6.6e-244 847.4 592 73.5
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 4.3e-243 844.7 695 66.0
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 5.6e-243 844.3 592 74.3
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.8e-242 842.0 600 73.3
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.4e-241 839.7 598 73.6
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 5.3e-241 837.8 599 73.0
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.0e-241 837.0 591 74.6
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.5e-240 836.3 567 76.2
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.6e-240 835.5 596 73.7
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.6e-240 835.5 597 73.9
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.2e-239 832.4 590 73.2
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 6.4e-239 830.9 568 76.4
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 6.4e-239 830.9 591 73.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-238 830.1 582 74.4
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.1e-238 830.1 566 76.3
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 4.2e-238 828.2 508 82.5
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 5.4e-238 827.8 589 74.2
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 9.3e-238 827.0 594 74.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 3.5e-237 825.1 600 73.3
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 7.9e-237 823.9 600 73.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.3e-236 823.2 582 75.3
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.8e-236 822.8 597 73.7
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 5.6e-235 817.8 613 71.8
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 2.8e-234 815.5 604 72.2
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.2e-234 814.3 602 71.9
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 8.1e-234 813.9 592 74.3
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 5.3e-233 811.2 592 72.1
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.4e-232 808.5 591 74.3
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 5.8e-232 807.7 590 71.2
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.2e-231 805.8 593 72.7
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.9e-231 804.7 590 71.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 9.3e-230 800.4 576 75.0
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.2e-229 800.0 576 74.8
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 6.0e-229 797.7 602 69.6
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 3.9e-228 795.0 590 69.7
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 3.3e-227 792.0 576 74.3
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.1e-225 785.4 511 78.3
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.1e-222 776.9 599 70.1
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.2e-221 773.5 606 69.0
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 7.2e-214 747.7 564 70.0
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.1e-213 746.1 580 68.4
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.9e-211 739.6 594 66.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.9e-208 728.0 593 66.3
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 3.8e-207 725.3 598 66.2
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 8.2e-202 707.6 601 65.2
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.0e-200 703.0 602 63.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.3e-194 683.7 524 68.9
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.4e-185 653.7 505 69.9
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 5.7e-179 631.7 433 76.9
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.1e-177 625.5 448 73.4
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.3e-170 604.0 478 66.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 2.2e-170 603.2 507 66.3
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 7.0e-161 571.6 391 78.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 3.3e-158 562.8 372 76.3
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 5.6e-158 562.0 528 59.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.1e-150 537.7 579 58.0
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 6.4e-138 495.4 519 52.6
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.6e-135 485.3 400 67.0
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 5.6e-126 455.7 331 74.0
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.2e-122 443.7 309 75.4
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.8e-111 407.5 252 83.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.9e-105 387.5 517 46.2
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.4e-92 344.7 229 78.2
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 3.4e-91 340.1 560 40.5
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 4.5e-91 339.7 229 76.0
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-76 292.0 210 69.0
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.6e-75 288.1 192 77.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.2e-61 241.1 257 51.4
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.1e-56 224.6 132 88.6
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.8e-56 224.2 242 46.7
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.9e-45 187.6 266 43.6
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 7.3e-41 172.9 132 67.4
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.9e-29 134.4 136 56.6
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.5e-25 121.3 187 42.2
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.2e-24 119.0 105 61.9
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 4.4e-22 110.5 103 59.2
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.4e-22 110.5 252 36.9
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-18 97.8 50 88.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.3e-16 92.4 83 59.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-14 84.7 52 82.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-11 75.9 55 67.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 4.6e-11 73.9 74 54.1
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 6.0e-11 73.6 74 54.1
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.9e-10 70.9 74 52.7
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 2.8e-08 64.7 57 54.4
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.1e-07 62.8 59 55.9
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 3.4e-06 57.8 86 45.3
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 3.4e-06 57.8 51 66.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 4.5e-06 57.4 51 43.1


User provided reference genes

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