Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 6.1e-78 294.3 170 100.0
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 5.8e-36 154.8 161 72.0
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 8.9e-29 131.0 153 64.1
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 4.4e-28 128.6 179 59.2
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 2.7e-25 119.4 180 57.8
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 6.6e-24 114.8 184 52.2
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 1.6e-22 110.2 179 55.3
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 8.9e-21 104.4 196 48.5
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 1.6e-17 93.6 189 47.6
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 3.0e-16 89.4 193 46.1
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 5.1e-16 88.6 181 47.0
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 4.3e-15 85.5 189 44.4
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 7.3e-15 84.7 196 44.4
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 1.6e-14 83.6 182 42.9
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.1e-14 83.2 127 51.2
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 4.8e-14 82.0 127 51.2
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.1e-13 80.9 159 49.1
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 1.4e-13 80.5 145 51.7
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 1.8e-13 80.1 183 39.3
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 2.4e-13 79.7 160 43.1
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 2.4e-13 79.7 147 51.7
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.2e-12 77.4 173 46.8
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 1.5e-12 77.0 176 47.7
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 2.6e-12 76.3 159 47.2
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 2.6e-12 76.3 166 43.4
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.5e-12 75.5 142 52.8
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 5.8e-12 75.1 150 46.0
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 1.3e-11 73.9 171 40.4
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.9e-11 72.8 150 44.7
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 3.8e-11 72.4 131 39.7
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 6.4e-11 71.6 155 46.5
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 8.4e-11 71.2 153 43.8
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 1.4e-10 70.5 155 41.9
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 2.4e-10 69.7 159 45.9
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 2.4e-10 69.7 173 43.9
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 4.2e-10 68.9 169 34.3
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.2e-09 67.4 151 42.4
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 1.2e-09 67.4 158 39.2
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.6e-09 67.0 151 43.0
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 4.6e-09 65.5 152 41.4
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 7.9e-09 64.7 145 46.9
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 7.9e-09 64.7 155 32.3
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 7.9e-09 64.7 157 46.5
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 1.3e-08 63.9 155 43.9
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 1.3e-08 63.9 155 43.9
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.3e-08 63.9 155 47.7
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 1.3e-08 63.9 130 32.3
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.8e-08 63.5 158 47.5
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 2.3e-08 63.2 170 41.8
DCAR_019289 Daucus carota HOM05D008046 ORTHO05D004477 3.0e-08 62.8 132 45.5
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 3.0e-08 62.8 176 46.6
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.0e-08 62.8 159 47.2
Eucgr.B00040 Eucalyptus grandis HOM05D008046 ORTHO05D004477 3.9e-08 62.4 159 39.6
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.9e-08 62.4 149 48.3
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 5.1e-08 62.0 136 33.1
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 8.7e-08 61.2 151 41.7
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.1e-07 60.8 135 40.7
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 1.5e-07 60.5 130 33.8
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.5e-07 60.5 158 36.1
CSS0043643 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.9e-07 60.1 134 49.3
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 3.3e-07 59.3 156 44.2
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 3.3e-07 59.3 138 50.0
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 5.6e-07 58.5 161 41.0
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 5.6e-07 58.5 161 41.0
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 5.6e-07 58.5 161 42.9
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 5.6e-07 58.5 111 54.1
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 7.4e-07 58.2 143 39.9
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 7.4e-07 58.2 161 42.9
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 7.4e-07 58.2 161 41.0
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.6e-06 57.0 143 41.3
THA.LOC104809723 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 2.8e-06 56.2 57 52.6
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 6.2e-06 55.1 146 33.6
ClCG11G014290 Citrullus lanatus HOM05D026294 ORTHO05D004477 6.2e-06 55.1 164 38.4
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 6.2e-06 55.1 161 33.5
Sc26g0000200 Simmondsia chinensis HOM05D013332 ORTHO05D004477 6.2e-06 55.1 147 30.6
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 6.2e-06 55.1 61 47.5
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 8.1e-06 54.7 147 43.5
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 8.1e-06 54.7 154 40.3


User provided reference genes

Program Settings