Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 2495.3 1273 100.0
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 2182.5 1276 88.2
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 2170.2 1330 85.1
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 2159.4 1277 86.3
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 2145.5 1276 86.0
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2123.6 1264 84.9
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 2120.1 1269 84.7
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 2110.5 1264 84.7
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 2104.3 1272 83.8
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 2078.1 1274 83.0
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2063.5 1274 82.2
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2052.3 1272 81.9
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2044.6 1343 78.6
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 2021.9 1272 80.9
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1827.4 1270 73.3
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1817.7 1270 73.5
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1817.4 1278 73.2
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1815.8 1272 73.1
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1812.3 1259 73.4
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1801.6 1272 73.1
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1801.2 1266 73.1
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1801.2 1261 72.7
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1800.8 1271 72.9
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1788.5 1300 71.2
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1785.0 1280 72.0
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1784.6 1279 72.0
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1782.3 1259 72.8
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1781.9 1279 71.6
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1780.8 1258 73.2
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1779.6 1274 71.8
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1765.7 1264 72.0
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1761.9 1264 71.4
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1751.1 1262 71.0
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1744.2 1272 70.5
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1737.6 1280 70.2
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1730.3 1266 70.6
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1729.1 1329 68.8
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1715.7 1260 68.7
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1715.3 1275 68.2
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1272 68.3
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1703.7 1277 68.6
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1701.8 1271 67.7
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1698.7 1261 69.1
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1697.6 1264 67.9
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1271 67.3
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1690.2 1295 66.9
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1685.6 1256 68.1
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1683.7 1257 67.6
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1678.7 1273 67.2
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1676.0 1276 67.8
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1267 69.4
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1673.3 1271 68.8
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1667.1 1284 66.7
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1663.3 1268 67.0
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1660.6 1196 71.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1658.3 1269 66.9
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1656.7 1266 67.9
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1653.3 1276 66.1
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1652.5 1269 67.5
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1651.0 1258 67.2
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1649.0 1266 66.2
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1647.5 1273 65.2
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1645.6 1270 66.9
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1644.4 1322 64.9
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1644.0 1272 65.6
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1639.8 1282 66.5
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1632.1 1264 66.1
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1630.5 1262 65.8
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1623.6 1258 66.6
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1623.2 1266 66.7
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1622.4 1255 67.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1613.6 1259 66.9
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1609.7 1263 66.0
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1608.6 1328 63.3
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1600.9 1253 67.0
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1600.1 1253 66.6
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1600.1 1272 66.4
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1599.3 1272 66.3
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1591.6 1192 68.4
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1590.5 1260 65.2
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1558.1 1272 65.2
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1533.9 1194 67.3
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1531.2 1263 63.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1530.0 1301 62.6
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1525.8 1193 65.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1525.4 1270 62.8
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1517.7 1212 65.7
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1479.9 1027 73.0
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1476.8 1177 64.8
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1456.0 1014 73.2
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1449.5 1278 59.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1447.2 1268 60.3
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1424.5 1261 58.3
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1406.0 1288 57.8
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1379.4 1262 57.6
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1286.9 1045 63.7
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1189.1 889 67.6
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1162.9 1270 49.4
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1162.1 1257 52.3
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1139.8 1272 48.7
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1115.1 890 64.5
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1110.5 972 59.4
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1085.5 958 62.2
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.0e-302 1042.3 795 66.0
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 3.4e-290 1002.3 1227 46.6
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.6e-287 993.4 677 74.9
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 4.3e-285 985.3 818 62.0
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 2.3e-262 909.8 1229 43.7
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.1e-219 768.1 1341 36.8
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 4.4e-213 746.1 555 70.8
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 4.3e-192 676.4 625 58.2
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.0e-185 655.2 1410 34.0
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 4.3e-184 649.8 601 56.2
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 1.9e-176 624.4 1280 33.4
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 4.3e-176 623.2 481 68.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 7.3e-168 595.9 498 63.5
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.0e-153 548.9 666 48.6
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 5.9e-125 453.4 322 70.5
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.7e-124 451.8 1163 30.5
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 4.7e-122 443.7 275 80.4
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 7.9e-122 443.0 717 42.1
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.2e-96 359.4 344 54.4
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.5e-96 359.0 246 76.8
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.0e-89 336.3 272 63.2
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.0e-89 336.3 272 63.2
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 8.6e-84 316.6 231 71.0
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 2.0e-77 295.4 200 73.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 9.5e-75 286.6 251 59.8
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 1.2e-58 233.0 192 65.1
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 8.1e-58 230.3 174 68.4
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 6.6e-52 210.7 161 68.3
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.2e-48 199.9 161 62.7
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.1e-41 176.8 104 78.8
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 3.0e-36 158.7 1226 22.2
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.1e-33 150.2 129 64.3
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.2e-29 136.7 225 42.7
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.7e-29 135.6 92 75.0
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 6.3e-26 124.4 122 60.7
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 6.3e-26 124.4 108 65.7
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 2.5e-22 112.5 115 48.7
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.6e-21 109.8 115 47.0
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 2.3e-20 105.9 161 42.2
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.1e-19 103.6 92 56.5
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 2.5e-19 102.4 62 82.3
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 6.3e-18 97.8 135 38.5
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 1.2e-16 93.6 161 38.5
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.0e-15 90.5 126 41.3
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 2.1e-13 82.8 111 39.6
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 7.4e-11 74.3 66 51.5
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 3.7e-10 72.0 150 39.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.1e-09 68.6 230 27.4
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 9.1e-09 67.4 61 60.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.4e-08 65.5 91 44.0
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.7e-07 63.2 41 78.0
Gohir.A02G122601 Gossypium hirsutum HOM05D004478 ORTHO05D016211 8.5e-07 60.8 59 57.6
Gohir.A05G315500 Gossypium hirsutum HOM05D004478 ORTHO05D016211 1.1e-06 60.5 50 60.0
Gohir.A06G146601 Gossypium hirsutum HOM05D000669 ORTHO05D015433 2.5e-06 59.3 57 52.6
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 3.2e-06 58.9 47 63.8
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 5.5e-06 58.2 38 71.1
Gohir.A13G120100 Gossypium hirsutum HOM05D000181 ORTHO05D016211 5.5e-06 58.2 59 55.9


User provided reference genes

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