Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24192 Trifolium pratense HOM05D003277 ORTHO05D003275 6.8e-63 243.8 123 100.0
Psat7g252120 Pisum sativum HOM05D003277 ORTHO05D003275 1.2e-46 189.9 123 82.9
Medtr4g012510 Medicago truncatula HOM05D003277 ORTHO05D003275 1.7e-45 186.0 122 82.0
TPR.G39760 Trifolium pratense HOM05D003277 ORTHO05D003275 1.8e-42 176.0 124 79.0
Psat7g252160 Pisum sativum HOM05D003277 ORTHO05D003275 1.9e-41 172.6 124 79.0
Medtr4g012350 Medicago truncatula HOM05D003277 ORTHO05D003275 2.4e-39 165.6 123 74.0
Medtr4g012490 Medicago truncatula HOM05D003277 ORTHO05D003275 2.6e-38 162.2 123 72.4
Psat7g252200 Pisum sativum HOM05D003277 ORTHO05D003275 3.4e-38 161.8 124 75.0
Lalb_Chr25g0279671 Lupinus albus HOM05D003277 ORTHO05D003275 5.8e-38 161.0 115 73.9
Psat7g251560 Pisum sativum HOM05D003277 ORTHO05D003275 9.9e-38 160.2 119 73.9
Glyma.08G206600 Glycine max HOM05D003277 ORTHO05D003275 1.3e-37 159.8 118 73.7
Medtr4g012390 Medicago truncatula HOM05D003277 ORTHO05D003275 5.5e-36 154.5 123 70.7
Psat7g251680 Pisum sativum HOM05D003277 ORTHO05D003275 5.5e-36 154.5 119 71.4
Psat7g251760 Pisum sativum HOM05D003277 ORTHO05D003275 7.1e-36 154.1 119 72.3
Psat7g251800 Pisum sativum HOM05D003277 ORTHO05D003275 1.2e-35 153.3 124 71.0
Psat7g251640 Pisum sativum HOM05D003277 ORTHO05D003275 6.0e-35 151.0 119 70.6
Medtr4g012460 Medicago truncatula HOM05D003277 ORTHO05D003275 7.9e-35 150.6 119 70.6
Glyma.07G006000 Glycine max HOM05D003277 ORTHO05D003275 1.0e-34 150.2 118 69.5
TPR.G39761 Trifolium pratense HOM05D003277 ORTHO05D003275 2.3e-34 149.1 124 70.2
Psat7g251720 Pisum sativum HOM05D003277 ORTHO05D003275 8.7e-34 147.1 120 69.2
VMungo0331G0823 Vigna mungo HOM05D003277 ORTHO05D003275 4.3e-33 144.8 106 72.6
Phvul.010G150400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.3e-32 143.3 114 69.3
Medtr4g012330 Medicago truncatula HOM05D003277 ORTHO05D003275 1.4e-31 139.8 124 67.7
Glyma.15G014600 Glycine max HOM05D003277 ORTHO05D003275 2.9e-29 132.1 107 66.4
Lj3g0000153 Lotus japonicus HOM05D003277 ORTHO05D003275 6.5e-29 131.0 108 67.6
Glyma.13G359300 Glycine max HOM05D003277 ORTHO05D003275 1.4e-28 129.8 108 65.7
Lalb_Chr04g0262721 Lupinus albus HOM05D003277 ORTHO05D003275 1.4e-28 129.8 104 66.3
Lalb_Chr04g0262701 Lupinus albus HOM05D003277 ORTHO05D003275 4.6e-27 124.8 105 65.7
Phvul.005G171100 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 8.2e-24 114.0 108 56.5
arahy.Tifrunner.gnm1.ann1.9450TA Arachis hypogaea HOM05D003277 ORTHO05D003275 1.4e-18 96.7 151 46.4
VMungo1080G1196 Vigna mungo HOM05D003111 ORTHO05D003502 1.4e-18 96.7 67 74.6
arahy.Tifrunner.gnm1.ann1.RIWW0V Arachis hypogaea HOM05D003277 ORTHO05D003275 1.8e-18 96.3 150 46.7
Atru.chr1.3275 Acer truncatum HOM05D003277 ORTHO05D003275 2.3e-18 95.9 94 57.4
arahy.Tifrunner.gnm1.ann1.YJAD7Q Arachis hypogaea HOM05D003277 ORTHO05D003275 3.9e-18 95.1 67 77.6
Ciclev10026796m.g Citrus clementina HOM05D003277 ORTHO05D003275 4.3e-17 91.7 104 51.9
Duzib235G0396 Durio zibethinus HOM05D003277 ORTHO05D003275 2.2e-16 89.4 108 50.9
Thecc.06G088500 Theobroma cacao HOM05D003277 ORTHO05D003275 6.3e-16 87.8 103 48.5
Migut.I00868 Erythranthe guttata HOM05D003277 ORTHO05D003275 7.7e-14 80.9 101 50.5
QL05p023505 Quercus lobata HOM05D003277 ORTHO05D003275 1.7e-13 79.7 89 51.7
Ca_01117_v3 Cicer arietinum L. HOM05D003111 ORTHO05D003502 2.9e-13 79.0 113 48.7
Cc04_g03410 Coffea canephora HOM05D003277 ORTHO05D003275 5.0e-13 78.2 69 60.9
Gohir.D05G129700 Gossypium hirsutum HOM05D003277 ORTHO05D003275 5.0e-13 78.2 87 48.3
Gorai.009G133500 Gossypium raimondii HOM05D003277 ORTHO05D003275 5.0e-13 78.2 87 48.3
Migut.D01029 Erythranthe guttata HOM05D003277 ORTHO05D003275 8.5e-13 77.4 109 45.9
Actinidia32754 Actinidia chinensis HOM05D003277 ORTHO05D003275 1.1e-12 77.0 99 47.5
COL.COLO4_30383 Corchorus olitorius HOM05D003277 ORTHO05D003275 1.4e-12 76.6 91 51.6
Cc02_g27850 Coffea canephora HOM05D003277 ORTHO05D003275 1.9e-12 76.3 76 53.9
Haze_16415 Corylus avellana HOM05D003277 ORTHO05D003275 1.9e-12 76.3 91 44.0
Haze_16418 Corylus avellana HOM05D003277 ORTHO05D003275 1.9e-12 76.3 91 45.1
Gohir.A05G130300 Gossypium hirsutum HOM05D003277 ORTHO05D003275 2.5e-12 75.9 87 47.1
PGSC0003DMG400005684 Solanum tuberosum HOM05D003277 ORTHO05D003275 2.5e-12 75.9 103 49.5
Nn2g11767 Nelumbo nucifera HOM05D003277 ORTHO05D003275 3.2e-12 75.5 71 57.7
Cfa002072 Carpinus fangiana HOM05D003277 ORTHO05D003275 4.2e-12 75.1 90 48.9
Oeu033486.1 Olea europaea HOM05D003277 ORTHO05D003275 4.2e-12 75.1 103 45.6
Solyc03g120170.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 5.5e-12 74.7 103 48.5
SalBow2G1122 Salvia bowleyana HOM05D003277 ORTHO05D003275 7.2e-12 74.3 86 48.8
SGA_v2.0_scaffold5G02589 Striga asiatica HOM05D003277 ORTHO05D003275 7.2e-12 74.3 64 62.5
Manes.11G047000 Manihot esculenta HOM05D003277 ORTHO05D003275 9.4e-12 73.9 105 47.6
Oeu063975.1 Olea europaea HOM05D003277 ORTHO05D003275 9.4e-12 73.9 62 64.5
Oeu063976.1 Olea europaea HOM05D003277 ORTHO05D003275 9.4e-12 73.9 62 64.5
Hma1.2p1_0092F.1_g046645 Hydrangea macrophylla HOM05D003277 ORTHO05D003275 1.6e-11 73.2 101 43.6
CSS0031837 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 2.1e-11 72.8 95 45.3
Nn8g39213 Nelumbo nucifera HOM05D003277 ORTHO05D003275 2.1e-11 72.8 118 42.4
Nitab4.5_0000671g0120 Nicotiana tabacum HOM05D003277 ORTHO05D003275 2.1e-11 72.8 91 49.5
Manes.04G123700 Manihot esculenta HOM05D003277 ORTHO05D003275 3.6e-11 72.0 66 60.6
Nitab4.5_0005851g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 4.7e-11 71.6 91 48.4
Peaxi162Scf00015g00042 Petunia axillaris HOM05D003277 ORTHO05D003275 4.7e-11 71.6 91 51.6
TAR624G0051 Trochodendron aralioides HOM05D003277 ORTHO05D003275 4.7e-11 71.6 106 45.3
CAN.G438.69 Capsicum annuum HOM05D003277 ORTHO05D003275 6.1e-11 71.2 71 59.2
MBI04_g08935_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 6.1e-11 71.2 110 43.6
Potri.001G180500 Populus trichocarpa HOM05D003277 ORTHO05D003275 6.1e-11 71.2 111 44.1
Sopen06g025000 Solanum pennellii HOM05D003277 ORTHO05D003275 6.1e-11 71.2 61 63.9
CANSAT56G1808 Cannabis sativa HOM05D003277 ORTHO05D003275 1.0e-10 70.5 112 44.6
Sopen03g039050 Solanum pennellii HOM05D003277 ORTHO05D003275 1.0e-10 70.5 103 47.6
Lalb_Chr04g0262691 Lupinus albus HOM05D003277 ORTHO05D003275 1.4e-10 70.1 59 66.1
PGSC0003DMG400016508 Solanum tuberosum HOM05D003277 ORTHO05D003275 1.8e-10 69.7 61 62.3
Potri.003G055100 Populus trichocarpa HOM05D003277 ORTHO05D003275 3.0e-10 68.9 103 43.7
Gorai.001G004600 Gossypium raimondii HOM05D003277 ORTHO05D003275 3.9e-10 68.6 61 59.0
Lalb_Chr25g0279751 Lupinus albus HOM05D003277 ORTHO05D003275 3.9e-10 68.6 54 64.8
Nitab4.5_0002859g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 3.9e-10 68.6 67 55.2
Gohir.A07G006900 Gossypium hirsutum HOM05D003277 ORTHO05D003275 6.7e-10 67.8 61 59.0
Solyc06g066710.1 Solanum lycopersicum HOM05D003277 ORTHO05D003275 6.7e-10 67.8 60 61.7
Nitab4.5_0014613g0010 Nicotiana tabacum HOM05D003277 ORTHO05D003275 8.8e-10 67.4 67 56.7
vmacro18910 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 8.8e-10 67.4 83 48.2
Gohir.D07G005000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.1e-09 67.0 61 57.4
Sabra01G0146300 Salix brachista HOM05D003277 ORTHO05D003275 1.5e-09 66.6 96 44.8
MBI01_g34157_MAGBIO Magnolia biondii HOM05D003277 ORTHO05D003275 3.3e-09 65.5 96 40.6
COL.COLO4_34902 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.4e-09 65.1 60 51.7
Thecc.09G112200 Theobroma cacao HOM05D003277 ORTHO05D003275 4.4e-09 65.1 87 46.0
VMungo0251G2336 Vigna mungo HOM05D003277 ORTHO05D003275 4.4e-09 65.1 57 61.4
Cfa003268 Carpinus fangiana HOM05D003277 ORTHO05D003275 7.4e-09 64.3 63 55.6
Glyma.05G231600 Glycine max HOM05D003277 ORTHO05D003275 9.7e-09 63.9 84 47.6
Manes.16G066800 Manihot esculenta HOM05D003277 ORTHO05D003275 9.7e-09 63.9 64 54.7
Prupe.3G070700 Prunus persica HOM05D003277 ORTHO05D003275 9.7e-09 63.9 99 43.4
CSS0013613 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 1.3e-08 63.5 91 42.9
SalBow2G2751 Salvia bowleyana HOM05D003277 ORTHO05D003275 1.3e-08 63.5 68 51.5
Sc09g0008990 Simmondsia chinensis HOM05D003277 ORTHO05D003275 1.3e-08 63.5 65 55.4
vmacro18909 Vaccinium macrocarpon HOM05D003277 ORTHO05D003275 1.3e-08 63.5 79 43.0
ATR1120G137 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.7e-08 63.2 107 39.3
Haze_21824 Corylus avellana HOM05D003277 ORTHO05D003275 1.7e-08 63.2 63 55.6
Dinv36618 Davidia involucrata HOM05D003277 ORTHO05D003275 1.7e-08 63.2 70 54.3
Phvul.002G313800 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.7e-08 63.2 58 62.1
Zm00001eb122140 Zea mays HOM05D003277 ORTHO05D003275 1.7e-08 63.2 72 48.6
Haze_25704 Corylus avellana HOM05D000750 ORTHO05D000714 2.2e-08 62.8 63 54.0
FvH4_1g05060 Fragaria vesca HOM05D003277 ORTHO05D003275 2.2e-08 62.8 106 42.5
FAN19G2424 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.2e-08 62.8 106 42.5
FAN26G0013 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.2e-08 62.8 106 42.5
Glyma.07G087300 Glycine max HOM05D003277 ORTHO05D003275 2.8e-08 62.4 103 43.7
RcHm_v2.0_Chr6g0305601 Rosa chinensis HOM05D003277 ORTHO05D003275 2.8e-08 62.4 69 50.7
Lalb_Chr25g0279761 Lupinus albus HOM05D003277 ORTHO05D003275 3.7e-08 62.0 56 55.4
ATR1120G144 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.8e-08 61.6 105 39.0
Aqoxy7G01700 Aquilegia oxysepala HOM05D003277 ORTHO05D003275 4.8e-08 61.6 85 44.7
Duzib150G0682 Durio zibethinus HOM05D003277 ORTHO05D003275 4.8e-08 61.6 60 51.7
MD17G1194700 Malus domestica HOM05D003277 ORTHO05D003275 4.8e-08 61.6 111 38.7
Prupe.1G454200 Prunus persica HOM05D003277 ORTHO05D003275 4.8e-08 61.6 69 50.7
Thecc.09G038300 Theobroma cacao HOM05D003277 ORTHO05D003275 4.8e-08 61.6 64 54.7
CSS0048107 Camellia sinensis var. sinensis HOM05D003277 ORTHO05D003275 6.3e-08 61.2 91 42.9
Duzib150G1012 Durio zibethinus HOM05D000818 ORTHO05D003275 6.3e-08 61.2 64 53.1
Lalb_Chr23g0269371 Lupinus albus HOM05D003277 ORTHO05D003275 8.2e-08 60.8 97 46.4
ATR1120G187 Amborella trichopoda HOM05D003277 ORTHO05D003275 1.1e-07 60.5 61 57.4
Actinidia08979 Actinidia chinensis HOM05D005698 ORTHO05D007022 1.4e-07 60.1 71 52.1
CAN.G395.13 Capsicum annuum HOM05D003277 ORTHO05D003275 1.8e-07 59.7 63 54.0
Cfa013333 Carpinus fangiana HOM05D003277 ORTHO05D003275 1.8e-07 59.7 64 53.1
MELO3C003594.2 Cucumis melo HOM05D003277 ORTHO05D003275 1.8e-07 59.7 68 48.5
Gohir.A07G024250 Gossypium hirsutum HOM05D003277 ORTHO05D003275 1.8e-07 59.7 57 54.4
Phvul.009G105000 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 1.8e-07 59.7 65 55.4
Prupe.7G229300 Prunus persica HOM05D003277 ORTHO05D003275 1.8e-07 59.7 66 53.0
Rhsim08G0221600 Rhododendron simsii HOM05D003277 ORTHO05D003275 1.8e-07 59.7 82 45.1
EL10Ac2g02521 Beta vulgaris HOM05D003277 ORTHO05D003275 2.4e-07 59.3 71 45.1
CsaV3_3G047340 Cucumis sativus L. HOM05D002580 ORTHO05D002811 2.4e-07 59.3 68 48.5
FAN20G0113 Fragaria x ananassa HOM05D003277 ORTHO05D003275 2.4e-07 59.3 71 49.3
FvH4_2g36280 Fragaria vesca HOM05D003277 ORTHO05D003275 3.1e-07 58.9 71 49.3
FAN15G2136 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.1e-07 58.9 71 49.3
FAN27G2228 Fragaria x ananassa HOM05D003277 ORTHO05D003275 3.1e-07 58.9 71 49.3
FAN28G0377 Fragaria x ananassa HOM05D000750 ORTHO05D000714 3.1e-07 58.9 105 41.0
Zm00001eb337590 Zea mays HOM05D003277 ORTHO05D003275 3.1e-07 58.9 71 47.9
ATR1120G160 Amborella trichopoda HOM05D003277 ORTHO05D003275 4.1e-07 58.5 61 50.8
COL.COLO4_18709 Corchorus olitorius HOM05D003277 ORTHO05D003275 4.1e-07 58.5 62 50.0
Gohir.D07G027850 Gossypium hirsutum HOM05D003277 ORTHO05D003275 4.1e-07 58.5 57 52.6
Gorai.001G029100 Gossypium raimondii HOM05D003277 ORTHO05D003275 4.1e-07 58.5 57 52.6
Os01g0182300 Oryza sativa ssp. japonica HOM05D003277 ORTHO05D003275 4.1e-07 58.5 79 45.6
Rhsim07G0155500 Rhododendron simsii HOM05D003277 ORTHO05D003275 4.1e-07 58.5 69 49.3
ATR1120G013 Amborella trichopoda HOM05D003277 ORTHO05D003275 7.0e-07 57.8 61 50.8
AUR62011006 Chenopodium quinoa HOM05D000030 ORTHO05D000009 7.0e-07 57.8 71 43.7
ClCG11G013950 Citrullus lanatus HOM05D003277 ORTHO05D003275 7.0e-07 57.8 68 48.5
Gohir.A05G049100 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.0e-07 57.8 64 50.0
Gohir.D05G051000 Gossypium hirsutum HOM05D003277 ORTHO05D003275 7.0e-07 57.8 64 50.0
Gorai.009G052600 Gossypium raimondii HOM05D003277 ORTHO05D003275 7.0e-07 57.8 64 50.0
QL02p085574 Quercus lobata HOM05D003277 ORTHO05D003275 7.0e-07 57.8 63 47.6
RcHm_v2.0_Chr2g0137921 Rosa chinensis HOM05D003277 ORTHO05D003275 7.0e-07 57.8 75 48.0
Ca_15626_v3 Cicer arietinum L. HOM05D003277 ORTHO05D003275 9.1e-07 57.4 70 48.6
Atru.chr7.2298 Acer truncatum HOM05D003277 ORTHO05D003275 1.2e-06 57.0 66 50.0
Carub.0003s1575 Capsella rubella HOM05D015723 ORTHO05D003275 1.2e-06 57.0 88 44.3
FAN23G0772 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.2e-06 57.0 105 41.0
Manes.03G064500 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-06 57.0 61 57.4
Manes.03G064940 Manihot esculenta HOM05D003277 ORTHO05D003275 1.2e-06 57.0 61 57.4
unitig_578.g16687 Utricularia gibba HOM05D003277 ORTHO05D003275 2.6e-06 55.8 109 34.9
HPP92_002801 Vanilla planifolia HOM05D003277 ORTHO05D003275 2.6e-06 55.8 63 49.2
Atru.chr7.1333 Acer truncatum HOM05D003277 ORTHO05D003275 3.4e-06 55.5 63 50.8
Phvul.004G162400 Phaseolus vulgaris HOM05D003277 ORTHO05D003275 3.4e-06 55.5 96 40.6
Ciclev10009982m.g Citrus clementina HOM05D003277 ORTHO05D003275 4.5e-06 55.1 69 43.5
Glyma.04G079300 Glycine max HOM05D003277 ORTHO05D003275 4.5e-06 55.1 67 50.7
Glyma.14G140500 Glycine max HOM05D003277 ORTHO05D003275 4.5e-06 55.1 58 53.4
HanXRQChr10g0313381 Helianthus annuus HOM05D003277 ORTHO05D003275 4.5e-06 55.1 77 48.1
Oeu036629.1 Olea europaea HOM05D003277 ORTHO05D003275 4.5e-06 55.1 56 50.0
TPR.G12111 Trifolium pratense HOM05D003277 ORTHO05D003275 4.5e-06 55.1 57 50.9
arahy.Tifrunner.gnm1.ann1.R7R2S9 Arachis hypogaea HOM05D003277 ORTHO05D003275 5.9e-06 54.7 99 40.4
MELO3C029688.2 Cucumis melo HOM05D003277 ORTHO05D003275 5.9e-06 54.7 62 50.0
Lsat_1_v5_gn_5_130221 Lactuca sativa HOM05D003277 ORTHO05D003275 5.9e-06 54.7 83 42.2
Lj1g0024029 Lotus japonicus HOM05D003277 ORTHO05D003275 5.9e-06 54.7 71 46.5
Sabra06G0191100 Salix brachista HOM05D003277 ORTHO05D003275 5.9e-06 54.7 71 46.5
Sopen12g003020 Solanum pennellii HOM05D003277 ORTHO05D003275 5.9e-06 54.7 116 37.1
BraA01t03867Z Brassica rapa HOM05D015723 ORTHO05D003275 7.7e-06 54.3 89 39.3
Cpa.g.sc205.7 Carica papaya HOM05D003277 ORTHO05D003275 7.7e-06 54.3 62 53.2
CsaV3_1G030570 Cucumis sativus L. HOM05D003277 ORTHO05D003275 7.7e-06 54.3 63 49.2
TAR636G2419 Trochodendron aralioides HOM05D000750 ORTHO05D000714 7.7e-06 54.3 40 67.5


User provided reference genes

Program Settings