Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2419 Trifolium pratense HOM05D004634 ORTHO05D005502 3.4e-142 508.4 283 100.0
Psat6g232600 Pisum sativum HOM05D004634 ORTHO05D005502 5.5e-124 448.0 256 92.6
Ca_03299_v3 Cicer arietinum L. HOM05D004634 ORTHO05D005502 2.0e-121 439.5 256 90.6
Medtr1g112860 Medicago truncatula HOM05D004634 ORTHO05D005502 2.2e-120 436.0 256 91.4
arahy.Tifrunner.gnm1.ann1.1RV92X Arachis hypogaea HOM05D004634 ORTHO05D005502 2.5e-108 396.0 271 81.5
arahy.Tifrunner.gnm1.ann1.X9NSEY Arachis hypogaea HOM05D004634 ORTHO05D005502 3.2e-108 395.6 271 81.5
Glyma.20G106600 Glycine max HOM05D004634 ORTHO05D005502 4.2e-108 395.2 255 83.5
Glyma.10G283100 Glycine max HOM05D004634 ORTHO05D005502 1.6e-107 393.3 255 82.7
Lj5g0018549 Lotus japonicus HOM05D004634 ORTHO05D005502 4.7e-107 391.7 255 81.6
Lalb_Chr21g0307021 Lupinus albus HOM05D004634 ORTHO05D005502 4.7e-107 391.7 257 81.7
VMungo0720G0537 Vigna mungo HOM05D004634 ORTHO05D005502 6.1e-107 391.3 255 81.6
Phvul.007G018100 Phaseolus vulgaris HOM05D004634 ORTHO05D005502 1.4e-106 390.2 255 82.0
Dinv41921 Davidia involucrata HOM05D004634 ORTHO05D005502 9.4e-100 367.5 242 78.9
Cpa.g.sc20.107 Carica papaya HOM05D004634 ORTHO05D005502 3.6e-99 365.5 257 75.5
FAN15G1522 Fragaria x ananassa HOM05D004634 ORTHO05D005502 6.1e-99 364.8 255 76.5
FAN24G0083 Fragaria x ananassa HOM05D004634 ORTHO05D005502 6.1e-99 364.8 255 76.5
FAN20G2203 Fragaria x ananassa HOM05D004634 ORTHO05D005502 8.0e-99 364.4 255 76.5
COL.COLO4_17371 Corchorus olitorius HOM05D004634 ORTHO05D005502 2.3e-98 362.8 258 76.7
FAN27G3200 Fragaria x ananassa HOM05D004634 ORTHO05D005502 3.0e-98 362.5 255 76.1
QL11p051507 Quercus lobata HOM05D004634 ORTHO05D005502 1.5e-97 360.1 245 76.7
Cfa005282 Carpinus fangiana HOM05D004634 ORTHO05D005502 3.4e-97 359.0 248 77.0
Sabra04G0119200 Salix brachista HOM05D004634 ORTHO05D005502 4.4e-97 358.6 233 82.0
MD05G1124500 Malus domestica HOM05D004634 ORTHO05D005502 9.8e-97 357.5 256 74.2
RcHm_v2.0_Chr6g0278771 Rosa chinensis HOM05D004634 ORTHO05D005502 2.8e-96 355.9 255 74.5
Dinv14123 Davidia involucrata HOM05D004634 ORTHO05D005502 6.3e-96 354.8 249 76.3
FvH4_2g15590 Fragaria vesca HOM05D004634 ORTHO05D005502 6.3e-96 354.8 270 72.2
Actinidia21473 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.1e-95 354.0 240 78.3
TWI31G0086 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.4e-95 353.6 256 75.0
CSS0049403 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 1.8e-95 353.2 229 81.7
CANSAT25G1088 Cannabis sativa HOM05D004634 ORTHO05D005502 2.4e-95 352.8 235 80.0
Potri.004G177300 Populus trichocarpa HOM05D004634 ORTHO05D005502 2.4e-95 352.8 233 81.1
Aqoxy6G02026 Aquilegia oxysepala HOM05D004634 ORTHO05D005502 3.1e-95 352.4 239 78.2
Actinidia20523 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.1e-95 352.1 251 76.1
PGR042G2401 Punica granatum HOM05D004634 ORTHO05D005502 4.1e-95 352.1 257 75.9
Hma1.2p1_0163F.1_g072640 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 5.4e-95 351.7 238 77.7
AUR62010016 Chenopodium quinoa HOM05D004634 ORTHO05D005502 1.2e-94 350.5 251 74.5
MD10G1127300 Malus domestica HOM05D004634 ORTHO05D005502 1.6e-94 350.1 239 76.2
EL10Ac9g21345 Beta vulgaris HOM05D004634 ORTHO05D005502 2.0e-94 349.7 250 74.0
AUR62013006 Chenopodium quinoa HOM05D004634 ORTHO05D005502 2.0e-94 349.7 251 74.5
CiPaw.05G084700 Carya illinoinensis HOM05D004634 ORTHO05D005502 5.9e-94 348.2 249 75.9
Ciclev10028955m.g Citrus clementina HOM05D004634 ORTHO05D005502 7.7e-94 347.8 234 79.5
TWI79G0300 Tripterygium wilfordii HOM05D004634 ORTHO05D005502 1.0e-93 347.4 239 77.0
Manes.04G071300 Manihot esculenta HOM05D004634 ORTHO05D005502 2.3e-93 346.3 256 71.1
Manes.11G097500 Manihot esculenta HOM05D004634 ORTHO05D005502 2.3e-93 346.3 258 72.1
Nitab4.5_0003698g0030 Nicotiana tabacum HOM05D004634 ORTHO05D005502 6.5e-93 344.7 238 75.6
Sopen01g053790 Solanum pennellii HOM05D004634 ORTHO05D005502 1.1e-92 344.0 247 73.3
Gohir.A12G036500 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.9e-92 343.2 257 73.2
Peaxi162Scf00362g00529 Petunia axillaris HOM05D004634 ORTHO05D005502 1.9e-92 343.2 247 72.9
CiPaw.06G120500 Carya illinoinensis HOM05D004634 ORTHO05D005502 3.3e-92 342.4 232 79.3
Hma1.2p1_0032F.1_g019265 Hydrangea macrophylla HOM05D004634 ORTHO05D005502 3.3e-92 342.4 262 73.3
Migut.B00062 Erythranthe guttata HOM05D004634 ORTHO05D005502 4.2e-92 342.0 249 72.7
Gorai.008G037300 Gossypium raimondii HOM05D004634 ORTHO05D005502 5.5e-92 341.7 257 72.8
Gohir.D12G036100 Gossypium hirsutum HOM05D004634 ORTHO05D005502 7.2e-92 341.3 257 72.8
vmacro17321 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 7.2e-92 341.3 242 75.2
Duzib132G0372 Durio zibethinus HOM05D004634 ORTHO05D005502 9.5e-92 340.9 257 72.4
Atru.chr5.3387 Acer truncatum HOM05D004634 ORTHO05D005502 1.6e-91 340.1 258 71.3
Eucgr.G01787 Eucalyptus grandis HOM05D004634 ORTHO05D005502 6.1e-91 338.2 230 77.0
Hund06448 Selenicereus undatus HOM05D004634 ORTHO05D005502 6.1e-91 338.2 230 79.1
Ah.01g023190 Amaranthus hybridus HOM05D004634 ORTHO05D005502 8.0e-91 337.8 251 72.5
Rhsim11G0193300 Rhododendron simsii HOM05D004634 ORTHO05D005502 8.0e-91 337.8 251 74.5
Gohir.A01G170200 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.0e-90 337.4 256 73.0
Gohir.D01G161300 Gossypium hirsutum HOM05D004634 ORTHO05D005502 1.4e-90 337.0 257 72.8
Gorai.002G199900 Gossypium raimondii HOM05D004634 ORTHO05D005502 1.4e-90 337.0 257 72.8
CSS0014782 Camellia sinensis var. sinensis HOM05D004634 ORTHO05D005502 3.0e-90 335.9 242 74.8
GSVIVG01023991001 Vitis vinifera HOM05D004634 ORTHO05D005502 3.0e-90 335.9 218 81.2
Prupe.8G168200 Prunus persica HOM05D004634 ORTHO05D005502 4.0e-90 335.5 244 73.8
HanXRQChr17g0544171 Helianthus annuus HOM05D004634 ORTHO05D005502 5.2e-90 335.1 220 79.1
Duzib052G0999 Durio zibethinus HOM05D004634 ORTHO05D005502 6.8e-90 334.7 256 72.3
Potri.009G137600 Populus trichocarpa HOM05D004634 ORTHO05D005502 6.8e-90 334.7 233 77.7
ECA246G0918 Erigeron canadensis HOM05D004634 ORTHO05D005502 1.5e-89 333.6 244 73.0
Nn5g30833 Nelumbo nucifera HOM05D004634 ORTHO05D005502 3.4e-89 332.4 249 72.3
MSTRG.19978 Avicennia marina HOM05D004634 ORTHO05D005502 4.4e-89 332.0 285 63.9
Rhsim05G0053200 Rhododendron simsii HOM05D004634 ORTHO05D005502 9.8e-89 330.9 259 71.4
CDE05G0405 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 2.2e-88 329.7 253 68.4
Sabra09G0106800 Salix brachista HOM05D004634 ORTHO05D005502 1.1e-87 327.4 233 76.0
ClCG02G003930 Citrullus lanatus HOM05D004634 ORTHO05D005502 1.4e-87 327.0 255 69.0
Migut.N01330 Erythranthe guttata HOM05D004634 ORTHO05D005502 1.4e-87 327.0 240 71.7
Sed0005362 Sechium edule HOM05D004634 ORTHO05D005502 1.4e-87 327.0 238 75.6
SGA_v2.0_scaffold58G20350 Striga asiatica HOM05D004634 ORTHO05D005502 1.4e-87 327.0 248 69.8
Thecc.02G056100 Theobroma cacao HOM05D004634 ORTHO05D005502 4.1e-87 325.5 244 73.0
ClCG02G012070 Citrullus lanatus HOM05D004634 ORTHO05D005502 5.4e-87 325.1 233 75.5
THA.LOC104824757 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 1.6e-86 323.6 231 73.6
MBI05_g00175_MAGBIO Magnolia biondii HOM05D004634 ORTHO05D005502 2.7e-86 322.8 240 71.2
THA.LOC104804086 Tarenaya hassleriana HOM05D004634 ORTHO05D005502 2.7e-86 322.8 259 68.7
Solyc01g111750.4 Solanum lycopersicum HOM05D004634 ORTHO05D005502 5.9e-86 321.6 237 71.3
Carub.0004s0001 Capsella rubella HOM05D004634 ORTHO05D005502 7.8e-86 321.2 275 65.8
CDE05G2434 Ceratophyllum demersum HOM05D004634 ORTHO05D005502 1.0e-85 320.9 253 68.4
TAR381G1727 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.0e-85 320.9 220 75.0
PGSC0003DMG400018041 Solanum tuberosum HOM05D004634 ORTHO05D005502 1.7e-85 320.1 237 71.3
Aa31LG7G15710 Aethionema arabicum HOM05D004634 ORTHO05D005502 2.3e-85 319.7 258 69.0
MELO3C013335.2 Cucumis melo HOM05D004634 ORTHO05D005502 2.3e-85 319.7 233 71.2
Lj9A400T59 Lonicera japonica HOM05D004634 ORTHO05D005502 2.3e-85 319.7 241 70.1
Sed0028226 Sechium edule HOM05D004634 ORTHO05D005502 2.3e-85 319.7 255 67.1
DCAR_003183 Daucus carota HOM05D004634 ORTHO05D005502 2.9e-85 319.3 226 74.8
CAN.G588.96 Capsicum annuum HOM05D004634 ORTHO05D005502 6.6e-85 318.2 217 76.5
PSO210G1566 Papaver somniferum HOM05D004634 ORTHO05D005502 6.6e-85 318.2 247 69.6
CARHR111820 Cardamine hirsuta HOM05D004634 ORTHO05D005502 8.6e-85 317.8 275 65.1
AL4G10040 Arabidopsis lyrata HOM05D004634 ORTHO05D005502 1.5e-84 317.0 258 67.8
C03p33070 Brassica napus HOM05D004634 ORTHO05D005502 1.5e-84 317.0 251 69.7
Sp4g00110 Schrenkiella parvula HOM05D004634 ORTHO05D005502 1.5e-84 317.0 258 69.0
AT2G20920 Arabidopsis thaliana HOM05D004634 ORTHO05D005502 2.5e-84 316.2 275 65.1
BcaB01g02957 Brassica carinata HOM05D004634 ORTHO05D005502 3.3e-84 315.8 251 69.3
BcaC01g04857 Brassica carinata HOM05D004634 ORTHO05D005502 3.3e-84 315.8 251 69.7
BolC3t15633H Brassica oleracea HOM05D004634 ORTHO05D005502 3.3e-84 315.8 251 69.7
PSO170G0173 Papaver somniferum HOM05D004634 ORTHO05D005502 1.2e-83 313.9 247 68.4
Aa31LG6G16660 Aethionema arabicum HOM05D004634 ORTHO05D005502 6.1e-83 311.6 256 66.4
Zm00001eb003030 Zea mays HOM05D004634 ORTHO05D005502 8.0e-83 311.2 235 69.8
vmacro02287 Vaccinium macrocarpon HOM05D004634 ORTHO05D005502 1.4e-82 310.5 284 63.4
Cc09_g10260 Coffea canephora HOM05D004634 ORTHO05D005502 2.0e-81 306.6 217 75.1
Zm00001eb402730 Zea mays HOM05D004634 ORTHO05D005502 2.0e-81 306.6 235 67.7
Ah.01g008170 Amaranthus hybridus HOM05D004634 ORTHO05D005502 3.4e-81 305.8 245 67.8
Thhalv10000275m.g Eutrema salsugineum HOM05D004634 ORTHO05D005502 3.4e-81 305.8 228 71.9
A03p27430 Brassica napus HOM05D004634 ORTHO05D005502 9.8e-81 304.3 227 72.2
BraA03t11955Z Brassica rapa HOM05D004634 ORTHO05D005502 9.8e-81 304.3 227 72.2
Duzib248G1349 Durio zibethinus HOM05D004634 ORTHO05D005502 9.8e-81 304.3 239 70.7
Oeu015555.1 Olea europaea HOM05D004634 ORTHO05D005502 3.7e-80 302.4 245 67.3
Lsat_1_v5_gn_3_47561 Lactuca sativa HOM05D004634 ORTHO05D005502 2.4e-79 299.7 202 77.2
unitig_744.g24280 Utricularia gibba HOM05D004634 ORTHO05D005502 2.4e-79 299.7 218 74.3
HPP92_001746 Vanilla planifolia HOM05D004634 ORTHO05D005502 4.6e-78 295.4 241 64.7
MELO3C020831.2 Cucumis melo HOM05D004634 ORTHO05D005502 1.3e-77 293.9 241 68.5
Nn6g31925 Nelumbo nucifera HOM05D004634 ORTHO05D005502 3.6e-75 285.8 201 73.1
Os03g0137300 Oryza sativa ssp. japonica HOM05D004634 ORTHO05D005502 1.5e-73 280.4 206 68.4
CsaV3_2G016230 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.0e-73 280.0 207 72.9
PSO541G4751 Papaver somniferum HOM05D004634 ORTHO05D005502 8.3e-72 274.6 245 61.6
ATR0661G512 Amborella trichopoda HOM05D004634 ORTHO05D005502 1.2e-70 270.8 206 69.4
Lj5A177T58 Lonicera japonica HOM05D004634 ORTHO05D005502 7.3e-68 261.5 217 67.3
PSO675G7052 Papaver somniferum HOM05D004634 ORTHO05D005502 1.5e-65 253.8 245 58.0
Mapoly0158s0035 Marchantia polymorpha HOM05D004634 ORTHO05D005502 3.4e-65 252.7 247 54.7
Haze_02111 Corylus avellana HOM05D004634 ORTHO05D005502 9.9e-65 251.1 162 79.6
TAR376G0880 Trochodendron aralioides HOM05D004634 ORTHO05D005502 4.9e-64 248.8 213 64.8
Sc18g0006360 Simmondsia chinensis HOM05D004634 ORTHO05D005502 4.1e-63 245.7 202 65.8
Pp3c10_20920 Physcomitrium patens HOM05D004634 ORTHO05D005502 9.2e-63 244.6 255 54.1
Pp3c20_20480 Physcomitrium patens HOM05D004634 ORTHO05D005502 6.6e-61 238.4 227 57.3
AagrBONN_evm.TU.Sc2ySwM_344.2768 Anthoceros agrestis HOM05D004634 ORTHO05D005502 1.5e-60 237.3 232 56.5
TAR381G0316 Trochodendron aralioides HOM05D004634 ORTHO05D005502 1.4e-58 230.7 169 70.4
Lj9A397T37 Lonicera japonica HOM05D004634 ORTHO05D005502 2.4e-58 229.9 180 68.3
SMO356G0675 Selaginella moellendorffii HOM05D004634 ORTHO05D005502 7.3e-52 208.4 233 51.9
Actinidia32031 Actinidia chinensis HOM05D004634 ORTHO05D005502 4.7e-51 205.7 138 76.8
CBR_g40579 Chara braunii HOM05D004634 ORTHO05D000002 4.2e-47 192.6 238 43.7
DCAR_003186 Daucus carota HOM05D004634 ORTHO05D005502 1.5e-41 174.1 113 79.6
Atru.chr5.3399 Acer truncatum HOM05D004634 ORTHO05D005502 3.4e-41 172.9 175 58.9
ECA246G0196 Erigeron canadensis HOM05D004634 ORTHO05D005502 9.9e-41 171.4 126 71.4
Actinidia18044 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.3e-40 171.0 157 62.4
Actinidia37338 Actinidia chinensis HOM05D004634 ORTHO05D005502 1.1e-34 151.4 110 73.6
Oeu029649.1 Olea europaea HOM05D004634 ORTHO05D005502 6.4e-32 142.1 117 62.4
MCO05G599 Micromonas commoda HOM05D004634 ORTHO05D005502 3.0e-29 133.3 242 35.5
Sed0025180 Sechium edule HOM05D004634 ORTHO05D005502 9.6e-28 128.3 139 57.6
CsaV3_7G001200 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.4e-26 123.6 153 50.3
CsaV3_7G001190 Cucumis sativus L. HOM05D004634 ORTHO05D005502 2.2e-19 100.5 63 79.4
Actinidia32030 Actinidia chinensis HOM05D004634 ORTHO05D005502 8.2e-19 98.6 69 75.4
Cre03.g190150 Chlamydomonas reinhardtii HOM05D004634 ORTHO05D005502 8.2e-19 98.6 258 33.3
Dinv01013 Davidia involucrata HOM05D004634 ORTHO05D005502 9.1e-10 68.6 51 72.5
Pp3c11_16200 Physcomitrium patens HOM05D000764 ORTHO05D002819 2.0e-09 67.4 233 28.3
TWI60G0248 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 7.7e-09 65.5 200 29.0
Dinv09272 Davidia involucrata HOM05D004634 ORTHO05D005502 1.0e-08 65.1 44 77.3
AUR62032163 Chenopodium quinoa HOM05D000764 ORTHO05D002819 1.3e-08 64.7 191 26.7
PRCOL_00007096 Prasinoderma coloniale HOM05D004634 ORTHO05D005502 3.8e-08 63.2 177 32.8
AUR62036921 Chenopodium quinoa HOM05D000764 ORTHO05D002819 5.0e-08 62.8 191 26.7
TWI81G0887 Tripterygium wilfordii HOM05D000764 ORTHO05D002819 5.0e-08 62.8 200 28.0
BcaC07g41182 Brassica carinata HOM05D004634 ORTHO05D005502 1.4e-07 61.2 59 55.9
Hund02536 Selenicereus undatus HOM05D000764 ORTHO05D002819 1.4e-07 61.2 190 26.8
Sc10g0009640 Simmondsia chinensis HOM05D000764 ORTHO05D002819 4.2e-07 59.7 191 28.3
Phvul.003G180200 Phaseolus vulgaris HOM05D000764 ORTHO05D002819 5.5e-07 59.3 181 28.2
Pp3c15_20170 Physcomitrium patens HOM05D000764 ORTHO05D002819 1.2e-06 58.2 180 28.3
Sed0013361 Sechium edule HOM05D000764 ORTHO05D002819 1.2e-06 58.2 174 29.9
Solyc03g114470.2 Solanum lycopersicum HOM05D000764 ORTHO05D002819 1.2e-06 58.2 191 28.3
Glyma.05G016100 Glycine max HOM05D000764 ORTHO05D002819 1.6e-06 57.8 181 26.5
THA.LOC104800953 Tarenaya hassleriana HOM05D000764 ORTHO05D002819 1.6e-06 57.8 196 26.5
SGA_v2.0_scaffold144G35872 Striga asiatica HOM05D000764 ORTHO05D002819 2.1e-06 57.4 200 26.0
Dinv44658 Davidia involucrata HOM05D004634 ORTHO05D005502 2.7e-06 57.0 41 73.2
Medtr4g112540 Medicago truncatula HOM05D000764 ORTHO05D002819 2.7e-06 57.0 181 26.0
Psat4g044600 Pisum sativum HOM05D000764 ORTHO05D002819 2.7e-06 57.0 181 25.4
EL10Ac5g11218 Beta vulgaris HOM05D000764 ORTHO05D002819 3.6e-06 56.6 191 27.2
Eucgr.K02640 Eucalyptus grandis HOM05D000764 ORTHO05D002819 3.6e-06 56.6 190 27.4
Sopen03g033570 Solanum pennellii HOM05D000764 ORTHO05D002819 3.6e-06 56.6 219 27.4
Potri.012G057700 Populus trichocarpa HOM05D000764 ORTHO05D002819 4.7e-06 56.2 211 27.0
TPR.G23891 Trifolium pratense HOM05D000764 ORTHO05D002819 4.7e-06 56.2 172 27.9
CDE02G0712 Ceratophyllum demersum HOM05D000764 ORTHO05D002819 6.1e-06 55.8 209 25.4
ClCG06G015190 Citrullus lanatus HOM05D000764 ORTHO05D002819 6.1e-06 55.8 174 28.7
Glyma.17G084100 Glycine max HOM05D000764 ORTHO05D002819 7.9e-06 55.5 180 26.1
PGSC0003DMG403024509 Solanum tuberosum HOM05D000764 ORTHO05D002819 7.9e-06 55.5 219 26.9


User provided reference genes

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