Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24180 Trifolium pratense HOM05D000029 ORTHO05D025859 6.3e-75 284.3 169 100.0
Medtr5g087340 Medicago truncatula HOM05D000029 ORTHO05D002586 9.1e-42 174.1 134 71.6
TPR.G31191 Trifolium pratense HOM05D000029 ORTHO05D002586 1.6e-41 173.3 135 76.3
Medtr5g087360 Medicago truncatula HOM05D000029 ORTHO05D002586 2.3e-40 169.5 134 71.6
TPR.G29911 Trifolium pratense HOM05D000029 ORTHO05D002586 3.0e-37 159.1 134 70.1
Medtr7g092880 Medicago truncatula HOM05D000029 ORTHO05D002586 5.0e-32 141.7 134 60.4
Medtr5g087350 Medicago truncatula HOM05D000029 ORTHO05D002586 2.5e-31 139.4 134 61.9
Ca_06142_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 1.2e-30 137.1 133 63.2
Lj3g0017714 Lotus japonicus HOM05D000029 ORTHO05D002586 1.2e-28 130.6 137 56.2
Medtr2g105680 Medicago truncatula HOM05D000029 ORTHO05D002586 1.7e-27 126.7 137 54.7
TPR.G31787 Trifolium pratense HOM05D000029 ORTHO05D002586 3.7e-27 125.6 137 54.0
arahy.Tifrunner.gnm1.ann1.UC5N5L Arachis hypogaea HOM05D000029 ORTHO05D002586 1.9e-26 123.2 138 52.9
TPR.G1170 Trifolium pratense HOM05D000029 ORTHO05D002586 7.0e-26 121.3 136 61.8
arahy.Tifrunner.gnm1.ann1.DUEZ3B Arachis hypogaea HOM05D000029 ORTHO05D002586 3.5e-25 119.0 139 50.4
Cfa021397 Carpinus fangiana HOM05D000029 ORTHO05D002586 1.0e-24 117.5 136 49.3
TAR559G0001 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.7e-24 116.7 138 47.8
Glyma.15G001500 Glycine max HOM05D000029 ORTHO05D002586 3.0e-24 115.9 139 50.4
QL10p030477 Quercus lobata HOM05D000029 ORTHO05D002586 6.6e-24 114.8 136 47.8
Psat5g046760 Pisum sativum HOM05D000029 ORTHO05D002586 1.5e-23 113.6 139 52.5
DCAR_026433 Daucus carota HOM05D001342 ORTHO05D002586 1.9e-23 113.2 134 49.3
TPR.G3503 Trifolium pratense HOM05D000029 ORTHO05D002586 7.3e-23 111.3 138 49.3
Ca_00985_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 9.5e-23 110.9 139 51.1
Ca_00999_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 9.5e-23 110.9 139 51.1
Haze_18878 Corylus avellana HOM05D000029 ORTHO05D002586 1.6e-22 110.2 136 46.3
arahy.Tifrunner.gnm1.ann1.6EK4ED Arachis hypogaea HOM05D000029 ORTHO05D002586 4.7e-22 108.6 137 49.6
Manes.04G099100 Manihot esculenta HOM05D000029 ORTHO05D002586 8.0e-22 107.8 136 46.3
TAR625G0481 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.1e-21 107.5 138 45.7
Manes.04G099300 Manihot esculenta HOM05D000029 ORTHO05D002586 1.8e-21 106.7 136 45.6
Medtr5g087370 Medicago truncatula HOM05D000029 ORTHO05D002586 1.8e-21 106.7 109 62.4
TPR.G29903 Trifolium pratense HOM05D000029 ORTHO05D002586 2.3e-21 106.3 84 67.9
MBI16_g00669_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002586 4.0e-21 105.5 138 43.5
MD17G1144300 Malus domestica HOM05D000029 ORTHO05D002586 5.2e-21 105.1 136 47.1
Sed0005839 Sechium edule HOM05D000029 ORTHO05D002586 1.5e-20 103.6 138 46.4
TWI12G0471 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 1.5e-20 103.6 138 41.3
PSO063G2705 Papaver somniferum HOM05D000029 ORTHO05D002586 2.0e-20 103.2 140 47.1
arahy.Tifrunner.gnm1.ann1.1L0XSC Arachis hypogaea HOM05D000029 ORTHO05D002586 3.4e-20 102.4 139 46.8
MELO3C025794.2 Cucumis melo HOM05D000029 ORTHO05D002586 5.8e-20 101.7 140 47.1
COL.COLO4_22867 Corchorus olitorius HOM05D001909 ORTHO05D007079 1.7e-19 100.1 141 41.1
TWI39G1249 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 3.7e-19 99.0 136 42.6
MELO3C025795.2 Cucumis melo HOM05D000029 ORTHO05D002586 4.9e-19 98.6 138 44.2
Cc04_g00430 Coffea canephora HOM05D000029 ORTHO05D002586 8.3e-19 97.8 125 47.2
Hund21921 Selenicereus undatus HOM05D000029 ORTHO05D002586 8.3e-19 97.8 132 40.9
Rhsim08G0247000 Rhododendron simsii HOM05D000029 ORTHO05D002586 1.1e-18 97.4 133 42.1
CiPaw.16G093800 Carya illinoinensis HOM05D000029 ORTHO05D002586 1.4e-18 97.1 121 47.1
PSO017G5321 Papaver somniferum HOM05D000029 ORTHO05D002586 1.4e-18 97.1 102 52.0
Phvul.007G137800 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 1.4e-18 97.1 134 48.5
Psat5g299600 Pisum sativum HOM05D000029 ORTHO05D002586 1.9e-18 96.7 138 45.7
Duzib235G1298 Durio zibethinus HOM05D000029 ORTHO05D002586 2.4e-18 96.3 141 37.6
Phvul.005G184700 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 3.2e-18 95.9 118 51.7
CsaV3_3G031210 Cucumis sativus L. HOM05D000029 ORTHO05D002586 4.1e-18 95.5 140 45.7
CsaV3_UNG227850 Cucumis sativus L. HOM05D000029 ORTHO05D002586 4.1e-18 95.5 140 45.7
TPR.G29920 Trifolium pratense HOM05D000029 ORTHO05D002586 4.1e-18 95.5 134 49.3
Lj5C25T13 Lonicera japonica HOM05D000029 ORTHO05D002586 7.0e-18 94.7 132 43.2
MD09G1158300 Malus domestica HOM05D000029 ORTHO05D002586 7.0e-18 94.7 136 42.6
Sed0011450 Sechium edule HOM05D000029 ORTHO05D002586 9.2e-18 94.4 138 44.2
Nitab4.5_0002885g0070 Nicotiana tabacum HOM05D000029 ORTHO05D002586 1.2e-17 94.0 133 40.6
Aqoxy6G02042 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 1.6e-17 93.6 139 46.0
Aqoxy6G02372 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 3.5e-17 92.4 137 43.8
PSO724G0700 Papaver somniferum HOM05D000029 ORTHO05D002586 4.6e-17 92.0 89 53.9
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.0e-16 90.9 134 47.0
VMungo0720G1393 Vigna mungo HOM05D000029 ORTHO05D002586 1.0e-16 90.9 134 46.3
CsaV3_3G031220 Cucumis sativus L. HOM05D000029 ORTHO05D002586 3.9e-16 89.0 138 41.3
CsaV3_UNG227870 Cucumis sativus L. HOM05D000029 ORTHO05D002586 3.9e-16 89.0 138 41.3
Phvul.011G166400 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 1.1e-15 87.4 135 42.2
CSS0039856 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002586 1.5e-15 87.0 130 41.5
VMungo1080G0163 Vigna mungo HOM05D000029 ORTHO05D002586 1.9e-15 86.7 141 43.3
SalBow6G1033 Salvia bowleyana HOM05D000029 ORTHO05D002586 5.6e-15 85.1 137 39.4
ClCG07G014170 Citrullus lanatus HOM05D000029 ORTHO05D002586 7.3e-15 84.7 140 42.9
RcHm_v2.0_Chr2g0150241 Rosa chinensis HOM05D000029 ORTHO05D002586 9.5e-15 84.3 139 40.3
TWI23G0691 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 9.5e-15 84.3 137 38.0
vmacro18700 Vaccinium macrocarpon HOM05D000029 ORTHO05D002586 9.5e-15 84.3 134 40.3
Glyma.20G194400 Glycine max HOM05D000029 ORTHO05D002586 1.2e-14 84.0 134 44.8
Nn8g40364 Nelumbo nucifera HOM05D000029 ORTHO05D002586 1.6e-14 83.6 116 44.0
Lalb_Chr24g0393671 Lupinus albus HOM05D000029 ORTHO05D002586 2.8e-14 82.8 103 49.5
Prupe.3G167800 Prunus persica HOM05D000029 ORTHO05D002586 2.8e-14 82.8 142 39.4
MSTRG.22507 Avicennia marina HOM05D000029 ORTHO05D002586 3.6e-14 82.4 131 41.2
arahy.Tifrunner.gnm1.ann1.MB3Q2U Arachis hypogaea HOM05D000029 ORTHO05D002586 8.1e-14 81.3 137 43.8
Hund21922 Selenicereus undatus HOM05D000029 ORTHO05D002586 1.1e-13 80.9 132 36.4
VMungo1127G0087 Vigna mungo HOM05D000029 ORTHO05D002586 1.1e-13 80.9 113 46.0
HPP92_010757 Vanilla planifolia HOM05D000029 ORTHO05D002586 1.8e-13 80.1 130 39.2
FAN14G3707 Fragaria x ananassa HOM05D000029 ORTHO05D002586 2.3e-13 79.7 139 38.1
TPR.G15448 Trifolium pratense HOM05D000029 ORTHO05D025859 2.3e-13 79.7 72 65.3
PSO478G5170 Papaver somniferum HOM05D000029 ORTHO05D002586 3.1e-13 79.3 102 47.1
FvH4_6g37430 Fragaria vesca HOM05D000029 ORTHO05D002586 4.0e-13 79.0 139 38.1
Aqoxy7G03163 Aquilegia oxysepala HOM05D000109 ORTHO05D002586 5.2e-13 78.6 138 40.6
FAN02G2390 Fragaria x ananassa HOM05D000029 ORTHO05D002586 5.2e-13 78.6 140 39.3
TPR.G23757 Trifolium pratense HOM05D000029 ORTHO05D025859 5.2e-13 78.6 76 64.5
TAR625G0533 Trochodendron aralioides HOM05D000029 ORTHO05D002586 5.2e-13 78.6 138 39.1
HPP92_010756 Vanilla planifolia HOM05D000029 ORTHO05D002586 5.2e-13 78.6 135 37.0
ATR0580G151 Amborella trichopoda HOM05D000029 ORTHO05D002586 6.8e-13 78.2 137 35.0
Nn2g12617 Nelumbo nucifera HOM05D000029 ORTHO05D002586 6.8e-13 78.2 115 42.6
arahy.Tifrunner.gnm1.ann1.UUXJ7Q Arachis hypogaea HOM05D000029 ORTHO05D002586 8.9e-13 77.8 136 39.7
Gohir.A10G007600 Gossypium hirsutum HOM05D000029 ORTHO05D002586 8.9e-13 77.8 140 32.9
Os08g0446200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D002586 8.9e-13 77.8 140 39.3
Hund21923 Selenicereus undatus HOM05D000029 ORTHO05D002586 8.9e-13 77.8 131 35.1
FAN09G2714 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.2e-12 77.4 139 38.1
Ah.14g085770 Amaranthus hybridus HOM05D000029 ORTHO05D002586 1.5e-12 77.0 143 36.4
Migut.I01152 Erythranthe guttata HOM05D000029 ORTHO05D002586 1.5e-12 77.0 135 37.8
FAN05G1949 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.5e-12 77.0 139 38.1
SGA_v2.0_scaffold71G24014 Striga asiatica HOM05D000029 ORTHO05D002586 1.5e-12 77.0 133 36.1
Sed0009650 Sechium edule HOM05D000029 ORTHO05D002586 2.6e-12 76.3 140 41.4
EL10Ac4g10016 Beta vulgaris HOM05D000029 ORTHO05D002586 3.4e-12 75.9 128 36.7
THA.LOC104823328 Tarenaya hassleriana HOM05D000029 ORTHO05D002586 3.4e-12 75.9 138 39.9
FAN02G3136 Fragaria x ananassa HOM05D000029 ORTHO05D002586 4.4e-12 75.5 140 38.6
GSVIVG01016126001 Vitis vinifera HOM05D000029 ORTHO05D002586 7.5e-12 74.7 137 35.0
Eucgr.F04005 Eucalyptus grandis HOM05D000029 ORTHO05D002586 1.7e-11 73.6 137 40.1
Potri.008G009300 Populus trichocarpa HOM05D000029 ORTHO05D002586 2.9e-11 72.8 137 36.5
ECA232G4700 Erigeron canadensis HOM05D000029 ORTHO05D002586 4.9e-11 72.0 85 42.4
Peaxi162Scf00038g02434 Petunia axillaris HOM05D000029 ORTHO05D002586 4.9e-11 72.0 119 38.7
Gorai.011G008200 Gossypium raimondii HOM05D000029 ORTHO05D002586 6.4e-11 71.6 140 31.4
Lalb_Chr17g0347411 Lupinus albus HOM05D000029 ORTHO05D002586 1.4e-10 70.5 61 65.6
Prupe.3G167900 Prunus persica HOM05D000029 ORTHO05D002586 1.9e-10 70.1 138 37.7
FAN05G3853 Fragaria x ananassa HOM05D000029 ORTHO05D002586 2.4e-10 69.7 139 36.7
AUR62006627 Chenopodium quinoa HOM05D000029 ORTHO05D002586 3.2e-10 69.3 80 48.8
Ah.04g159190 Amaranthus hybridus HOM05D000029 ORTHO05D002586 5.4e-10 68.6 87 44.8
Gohir.D10G007500 Gossypium hirsutum HOM05D000029 ORTHO05D002586 5.4e-10 68.6 140 30.0
AUR62000279 Chenopodium quinoa HOM05D000029 ORTHO05D002586 7.1e-10 68.2 80 48.8
Hma1.2p1_1104F.1_g257410 Hydrangea macrophylla HOM05D000029 ORTHO05D002586 7.1e-10 68.2 131 36.6
Dinv37802 Davidia involucrata HOM05D000029 ORTHO05D002586 9.2e-10 67.8 112 38.4
Lalb_Chr02g0150951 Lupinus albus HOM05D000029 ORTHO05D002586 1.2e-09 67.4 139 40.3
Sabra08G0005300 Salix brachista HOM05D000029 ORTHO05D002586 1.2e-09 67.4 136 36.0
Ciclev10024756m.g Citrus clementina HOM05D000029 ORTHO05D002586 4.6e-09 65.5 87 43.7
FAN09G1043 Fragaria x ananassa HOM05D000029 ORTHO05D002586 7.8e-09 64.7 140 36.4
CsaV3_3G031200 Cucumis sativus L. HOM05D001181 ORTHO05D001678 1.0e-08 64.3 94 43.6
CsaV3_UNG227840 Cucumis sativus L. HOM05D001181 ORTHO05D001678 1.0e-08 64.3 94 43.6
Zm00001eb040920 Zea mays HOM05D000029 ORTHO05D002586 1.0e-08 64.3 141 34.8
Glyma.10G195700 Glycine max HOM05D000029 ORTHO05D002586 1.3e-08 63.9 106 44.3
Aa31LG4G3350 Aethionema arabicum HOM05D000029 ORTHO05D002586 2.3e-08 63.2 136 37.5
Medtr1g090520 Medicago truncatula HOM05D000029 ORTHO05D002586 3.0e-08 62.8 132 39.4
Manes.16G045200 Manihot esculenta HOM05D000029 ORTHO05D002586 3.9e-08 62.4 137 34.3
Potri.008G007600 Populus trichocarpa HOM05D000029 ORTHO05D002586 3.9e-08 62.4 104 38.5
Sc12g0007710 Simmondsia chinensis HOM05D000029 ORTHO05D002586 8.6e-08 61.2 60 53.3
BraA07t30636Z Brassica rapa HOM05D000029 ORTHO05D002586 1.1e-07 60.8 128 35.2
CAN.G790.29 Capsicum annuum HOM05D000029 ORTHO05D002586 1.1e-07 60.8 89 40.4
Thecc.06G016200 Theobroma cacao HOM05D000029 ORTHO05D002586 1.9e-07 60.1 137 30.7
CANSAT01G2271 Cannabis sativa HOM05D000029 ORTHO05D002586 4.3e-07 58.9 129 34.9
ClCG10G009190 Citrullus lanatus HOM05D000033 ORTHO05D010114 1.2e-06 57.4 103 37.9
ECA247G0406 Erigeron canadensis HOM05D000029 ORTHO05D002586 1.6e-06 57.0 92 37.0
EL10Ac8g19461 Beta vulgaris HOM05D000029 ORTHO05D002586 2.1e-06 56.6 109 34.9
HanXRQChr04g0097591 Helianthus annuus HOM05D000311 ORTHO05D000183 2.1e-06 56.6 83 41.0
Peaxi162Scf00263g00614 Petunia axillaris HOM05D000029 ORTHO05D002519 2.1e-06 56.6 125 33.6
Eucgr.F04007 Eucalyptus grandis HOM05D000029 ORTHO05D002586 2.8e-06 56.2 138 34.8
FAN28G2276 Fragaria x ananassa HOM05D000071 ORTHO05D000029 2.8e-06 56.2 128 35.9
Solyc03g064010.4 Solanum lycopersicum HOM05D000033 ORTHO05D007591 6.2e-06 55.1 92 39.1
Sopen03g017660 Solanum pennellii HOM05D000033 ORTHO05D007591 6.2e-06 55.1 92 39.1


User provided reference genes

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