Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 3.0e-279 964.5 488 100.0
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.3e-218 763.1 494 82.8
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 6.4e-213 744.2 501 80.0
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 1.6e-203 713.0 502 74.9
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 2.0e-174 616.3 515 66.8
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.1e-172 610.5 510 67.5
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 2.5e-172 609.4 522 62.6
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.5e-172 609.4 502 67.3
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 4.6e-171 605.1 521 62.4
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.8e-168 595.9 494 67.0
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 6.5e-149 531.6 499 60.1
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 3.0e-146 522.7 484 59.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 7.7e-142 508.1 495 57.4
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.2e-139 500.7 493 56.0
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 4.0e-138 495.7 495 56.2
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 6.8e-138 495.0 496 56.9
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 4.4e-137 492.3 491 57.0
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 4.8e-136 488.8 499 55.7
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 3.1e-135 486.1 489 56.4
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 9.1e-135 484.6 501 55.7
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 2.0e-134 483.4 505 55.0
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 4.5e-134 482.3 501 54.9
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.0e-133 481.1 497 55.1
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.3e-133 480.7 497 54.5
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.3e-133 480.7 497 55.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.5e-132 477.2 500 54.2
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 2.5e-132 476.5 499 53.5
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.2e-131 474.2 495 56.0
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 2.7e-131 473.0 437 59.5
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.0e-130 469.5 483 54.2
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 5.2e-130 468.8 498 53.8
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 5.2e-130 468.8 457 56.2
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 2.0e-129 466.8 493 53.3
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 4.4e-129 465.7 493 52.7
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 4.4e-129 465.7 499 54.3
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 9.2e-127 458.0 447 56.8
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 2.0e-126 456.8 501 53.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.5e-126 455.7 503 52.7
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 1.0e-125 454.5 486 52.1
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 3.3e-124 449.5 500 51.2
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.2e-123 447.6 494 52.8
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.6e-123 447.2 466 54.7
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 4.0e-122 442.6 501 52.9
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 3.7e-120 436.0 386 61.4
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 6.4e-120 435.3 512 53.7
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 6.4e-120 435.3 483 53.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 9.2e-119 431.4 458 53.3
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.0e-118 430.3 499 51.9
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 3.5e-118 429.5 467 53.3
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.5e-118 429.5 449 52.3
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.5e-118 429.5 353 66.0
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 4.6e-118 429.1 499 51.7
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 4.6e-118 429.1 405 57.0
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.9e-118 428.7 499 52.1
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.0e-117 427.9 500 52.4
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.0e-117 427.9 405 56.8
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.7e-117 427.2 405 56.5
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.0e-117 426.4 506 48.8
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 3.0e-117 426.4 500 49.6
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 3.0e-117 426.4 489 50.7
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 5.0e-117 425.6 495 50.3
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 3.3e-116 422.9 497 49.1
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.6e-116 422.2 499 51.7
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.8e-115 419.9 498 48.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 3.6e-115 419.5 495 48.7
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 8.0e-115 418.3 500 48.6
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.1e-114 416.4 483 51.6
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 8.3e-112 408.3 403 56.6
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 4.1e-111 406.0 504 47.8
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 7.8e-110 401.7 494 49.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 3.9e-109 399.4 479 50.7
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 3.9e-109 399.4 480 50.6
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 6.6e-109 398.7 462 50.0
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 6.6e-109 398.7 483 50.1
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 5.6e-108 395.6 508 49.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 9.5e-108 394.8 491 49.7
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.8e-107 393.3 414 54.3
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 2.3e-106 390.2 487 50.5
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 7.5e-105 385.2 497 47.3
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.9e-104 383.3 455 47.5
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.9e-104 382.5 497 43.9
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 6.4e-104 382.1 503 44.7
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 2.4e-103 380.2 293 67.6
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 2.4e-103 380.2 493 47.9
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 7.1e-103 378.6 488 45.9
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 9.2e-103 378.3 403 53.1
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 3.5e-102 376.3 493 49.1
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 8.6e-101 371.7 403 52.4
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 8.6e-101 371.7 419 50.6
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 2.5e-100 370.2 403 51.4
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 2.1e-99 367.1 403 50.6
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 8.1e-99 365.2 504 44.6
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 2.3e-98 363.6 505 43.8
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 8.9e-98 361.7 500 45.8
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 2.0e-97 360.5 500 44.2
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.7e-96 357.5 454 46.7
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 9.2e-95 351.7 486 43.2
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.2e-94 351.3 408 49.3
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.6e-94 350.9 403 50.1
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.3e-93 347.8 431 45.7
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 1.5e-92 344.4 236 74.6
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.5e-92 343.6 430 46.5
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 7.3e-92 342.0 510 41.0
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 5.8e-89 332.4 504 42.1
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 7.6e-89 332.0 367 54.2
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 3.2e-87 326.6 507 40.6
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.6e-86 324.3 409 46.9
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 1.3e-85 321.2 491 40.3
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 3.0e-85 320.1 512 40.8
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 4.3e-84 316.2 512 40.8
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 4.3e-84 316.2 513 40.2
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 5.8e-81 305.8 506 40.5
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 5.8e-81 305.8 193 75.6
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.2e-80 303.9 398 48.2
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 2.7e-78 297.0 382 44.8
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 6.0e-78 295.8 197 73.6
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 3.0e-77 293.5 511 38.7
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 3.9e-77 293.1 512 39.1
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.4e-74 284.6 408 41.9
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 2.9e-72 276.9 489 39.1
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.4e-72 275.8 366 44.0
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.1e-71 275.0 512 37.5
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.7e-70 270.4 476 39.5
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 6.7e-69 265.8 476 39.1
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.5e-68 264.6 403 40.7
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.5e-68 264.6 387 41.6
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 2.8e-67 260.4 404 39.6
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 5.8e-65 252.7 170 73.5
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.3e-64 251.5 417 38.6
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 2.9e-64 250.4 358 43.3
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.0e-61 241.9 191 63.9
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.1e-59 234.2 416 38.7
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.0e-57 227.6 518 32.6
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 3.4e-57 226.9 168 70.2
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 3.4e-57 226.9 168 70.2
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.2e-54 218.4 411 38.7
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 4.6e-54 216.5 437 34.1
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.1e-52 211.8 429 33.8
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.5e-52 211.5 483 34.4
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 3.8e-48 196.8 109 82.6
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-47 194.1 381 36.0
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.1e-42 177.2 173 54.3
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 9.1e-42 175.6 174 52.9
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 4.5e-41 173.3 173 52.6
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 3.2e-39 167.2 440 29.5
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.8e-37 161.4 147 55.1
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 6.7e-37 159.5 159 48.4
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 9.7e-36 155.6 342 33.6
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 5.3e-34 149.8 386 31.1
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 8.5e-32 142.5 344 32.3
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 7.2e-31 139.4 257 38.9
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 7.2e-31 139.4 257 38.9
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 2.4e-26 124.4 116 60.3
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 4.8e-19 100.1 271 29.9
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 2.2e-11 74.7 126 34.9


User provided reference genes

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