Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 5.4e-147 524.2 252 100.0
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 3.0e-129 465.3 252 88.9
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 3.0e-121 438.7 252 83.3
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 6.2e-119 431.0 254 84.3
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 1.1e-112 410.2 253 78.3
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.4e-110 403.3 254 77.6
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.3e-105 386.7 257 74.3
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 4.8e-103 378.3 252 75.4
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.3e-100 370.2 256 71.9
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-100 369.4 246 74.4
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 4.9e-100 368.2 260 72.3
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 8.4e-100 367.5 246 74.4
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 8.4e-92 340.9 257 67.3
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.9e-91 339.7 259 67.6
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.2e-91 339.0 257 66.1
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 4.2e-91 338.6 255 66.7
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 9.3e-91 337.4 260 65.0
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 9.3e-91 337.4 257 66.1
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.7e-90 335.9 257 65.8
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 1.0e-89 334.0 252 66.7
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 1.5e-88 330.1 259 62.5
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 2.5e-88 329.3 251 66.1
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.3e-88 328.6 255 66.3
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 9.6e-88 327.4 255 64.7
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.3e-87 327.0 253 65.2
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.1e-87 326.2 256 63.7
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 2.8e-87 325.9 258 65.5
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 6.2e-87 324.7 253 63.2
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.2e-87 324.3 256 63.3
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 1.1e-86 323.9 255 63.5
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 1.8e-86 323.2 252 63.5
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 5.3e-86 321.6 256 64.5
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 2.0e-85 319.7 259 64.9
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.4e-85 318.9 253 66.4
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 4.5e-85 318.5 253 66.0
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.5e-85 318.5 253 66.0
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.0e-84 317.4 245 65.7
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 1.7e-84 316.6 262 61.5
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 8.4e-84 314.3 259 62.5
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 8.4e-84 314.3 253 62.1
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 4.2e-83 312.0 176 82.4
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.2e-83 312.0 255 62.7
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.5e-83 311.6 264 64.0
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 5.5e-83 311.6 251 62.2
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 9.3e-83 310.8 264 60.2
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 1.6e-82 310.1 243 63.8
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 2.1e-82 309.7 264 61.4
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 6.0e-82 308.1 254 63.0
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 1.3e-81 307.0 172 82.6
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 2.3e-81 306.2 246 62.2
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 2.3e-81 306.2 243 64.2
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 2.3e-81 306.2 257 60.3
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 3.0e-81 305.8 257 61.9
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 3.9e-81 305.4 258 62.8
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 5.1e-81 305.1 258 62.4
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.1e-80 303.9 253 62.1
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 1.5e-80 303.5 257 61.1
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 2.5e-80 302.8 254 60.6
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 3.3e-80 302.4 278 58.3
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 3.3e-80 302.4 259 58.3
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 9.7e-80 300.8 260 58.8
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 2.8e-79 299.3 261 60.2
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 6.3e-79 298.1 259 58.7
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 6.3e-79 298.1 290 54.5
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 8.2e-79 297.7 259 60.6
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 8.2e-79 297.7 262 59.5
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 8.2e-79 297.7 216 68.1
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 8.2e-79 297.7 254 59.4
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 1.1e-78 297.4 250 62.4
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.4e-78 297.0 254 59.4
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 1.8e-78 296.6 246 63.0
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 1.8e-78 296.6 257 59.1
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 2.4e-78 296.2 258 60.1
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.6e-77 292.7 246 63.0
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 2.6e-77 292.7 263 58.9
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 3.4e-77 292.4 254 57.5
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 4.5e-77 292.0 251 59.4
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 1.7e-76 290.0 250 61.2
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.9e-76 289.3 255 59.6
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.9e-76 289.3 255 59.6
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 5.0e-76 288.5 253 59.7
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 8.5e-76 287.7 259 59.8
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 8.5e-76 287.7 254 60.2
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 1.1e-75 287.3 246 59.3
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 1.4e-75 287.0 267 54.7
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 1.9e-75 286.6 266 56.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 1.9e-75 286.6 257 55.6
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 2.5e-75 286.2 183 72.1
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 3.2e-75 285.8 262 55.7
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 4.2e-75 285.4 252 59.1
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 4.2e-75 285.4 174 75.3
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 7.2e-75 284.6 253 58.9
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 2.7e-74 282.7 216 67.1
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 2.7e-74 282.7 252 59.1
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 3.6e-74 282.3 263 54.4
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 7.9e-74 281.2 260 56.5
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 1.4e-73 280.4 216 66.7
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-73 280.4 178 73.6
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 1.4e-73 280.4 178 73.6
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 1.8e-73 280.0 254 57.5
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 2.3e-73 279.6 180 71.7
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 6.7e-73 278.1 257 58.0
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 2.0e-72 276.6 171 74.3
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 2.0e-72 276.6 218 62.8
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 2.5e-72 276.2 262 54.6
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 2.5e-72 276.2 245 58.8
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 3.3e-72 275.8 182 68.7
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 3.3e-72 275.8 254 55.1
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 3.3e-72 275.8 182 68.7
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 4.3e-72 275.4 251 55.4
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 7.4e-72 274.6 191 67.0
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 9.7e-72 274.2 254 55.9
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.3e-71 273.9 182 69.2
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.3e-71 273.9 259 56.0
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.7e-71 273.5 180 69.4
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 2.2e-71 273.1 256 55.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 2.8e-71 272.7 260 55.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 3.7e-71 272.3 258 56.6
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 4.8e-71 271.9 253 56.1
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 6.3e-71 271.6 185 68.1
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.1e-70 270.8 174 73.0
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 3.1e-70 269.2 148 84.5
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 4.1e-70 268.9 249 56.2
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 5.3e-70 268.5 197 66.0
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 2.9e-68 262.7 148 82.4
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 5.0e-68 261.9 256 55.1
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.0e-65 254.2 231 56.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 1.9e-59 233.4 179 61.5
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 9.4e-59 231.1 221 54.3
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 2.1e-58 229.9 137 77.4
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 4.7e-58 228.8 262 50.0
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 6.1e-58 228.4 260 50.0
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 2.3e-57 226.5 167 61.7
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 2.0e-56 223.4 262 49.2
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 6.3e-55 218.4 167 59.9
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.2e-55 218.0 152 69.7
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 8.2e-55 218.0 110 91.8
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 1.4e-54 217.2 164 61.6
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 8.5e-52 208.0 160 58.1
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 8.5e-52 208.0 149 62.4
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 3.2e-51 206.1 167 56.9
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 7.2e-51 204.9 166 56.0
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 3.0e-49 199.5 254 45.7
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 3.8e-44 182.6 256 44.9
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-42 177.2 207 50.2
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.0e-40 170.2 143 63.6
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 3.0e-33 146.4 83 83.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 1.1e-30 137.9 90 70.0
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 3.2e-30 136.3 145 52.4
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.3e-28 130.2 101 60.4
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 7.3e-27 125.2 63 88.9
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.6e-26 124.0 78 74.4
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.6e-26 124.0 213 31.5
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.6e-26 124.0 82 63.4
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.1e-22 111.3 142 41.5
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 7.0e-22 108.6 78 65.4
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 3.5e-21 106.3 67 76.1
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.5e-19 100.1 86 59.3
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 8.0e-18 95.1 65 64.6
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 7.5e-16 88.6 48 81.2
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 3.5e-13 79.7 39 89.7
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 3.5e-13 79.7 51 70.6
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.9e-11 73.9 51 66.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.9e-11 73.9 51 66.7
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.5e-08 64.3 43 67.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.3e-07 61.2 100 42.0
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 4.9e-07 59.3 36 69.4
arahy.Tifrunner.gnm1.ann1.T252JQ Arachis hypogaea HOM05D004168 ORTHO05D004999 3.2e-06 56.6 40 65.0


User provided reference genes

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