Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24118 Trifolium pratense HOM05D003144 ORTHO05D003539 3.0e-54 214.9 108 100.0
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 9.0e-43 176.8 105 84.8
VMungo1215G0425 Vigna mungo HOM05D003144 ORTHO05D003539 4.3e-37 157.9 106 73.6
Glyma.01G171800 Glycine max HOM05D003144 ORTHO05D003539 2.8e-36 155.2 106 72.6
Lj4g0005388 Lotus japonicus HOM05D003144 ORTHO05D003539 3.7e-36 154.8 94 80.9
Phvul.002G033600 Phaseolus vulgaris HOM05D003144 ORTHO05D003539 5.3e-35 151.0 106 70.8
Glyma.11G071400 Glycine max HOM05D003144 ORTHO05D003539 6.9e-35 150.6 106 69.8
Hma1.2p1_1297F.1_g274090 Hydrangea macrophylla HOM05D003144 ORTHO05D003539 3.8e-33 144.8 98 69.4
CiPaw.02G020200 Carya illinoinensis HOM05D003144 ORTHO05D003539 6.5e-33 144.1 98 70.4
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 8.5e-33 143.7 101 65.3
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 1.9e-32 142.5 106 67.0
RcHm_v2.0_Chr2g0100911 Rosa chinensis HOM05D003144 ORTHO05D003539 1.6e-31 139.4 98 68.4
GSVIVG01018921001 Vitis vinifera HOM05D003144 ORTHO05D003539 1.6e-31 139.4 99 64.6
FvH4_1g12790 Fragaria vesca HOM05D003144 ORTHO05D003539 2.7e-31 138.7 98 64.3
FAN23G2566 Fragaria x ananassa HOM05D003144 ORTHO05D003539 3.6e-31 138.3 100 65.0
Rhsim08G0119800 Rhododendron simsii HOM05D003144 ORTHO05D003539 1.0e-30 136.7 99 65.7
MD15G1256700 Malus domestica HOM05D003144 ORTHO05D003539 1.8e-30 136.0 98 64.3
Nn1g04916 Nelumbo nucifera HOM05D003144 ORTHO05D003539 2.3e-30 135.6 98 66.3
QL06p047123 Quercus lobata HOM05D003144 ORTHO05D003539 3.9e-30 134.8 104 64.4
COL.COLO4_22036 Corchorus olitorius HOM05D003144 ORTHO05D003539 5.1e-30 134.4 98 67.3
Dinv13496 Davidia involucrata HOM05D003144 ORTHO05D003539 5.1e-30 134.4 98 67.3
FAN26G2828 Fragaria x ananassa HOM05D003144 ORTHO05D003539 6.7e-30 134.0 98 62.2
Lalb_Chr09g0322171 Lupinus albus HOM05D003144 ORTHO05D003539 6.7e-30 134.0 106 61.3
arahy.Tifrunner.gnm1.ann1.U5PEZY Arachis hypogaea HOM05D003144 ORTHO05D003539 8.8e-30 133.7 106 61.3
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 1.1e-29 133.3 98 62.2
TPR.G24094 Trifolium pratense HOM05D003144 ORTHO05D003539 1.1e-29 133.3 93 73.1
arahy.Tifrunner.gnm1.ann1.SCCL3I Arachis hypogaea HOM05D003144 ORTHO05D003539 1.5e-29 132.9 106 61.3
TAR628G0922 Trochodendron aralioides HOM05D003144 ORTHO05D003539 1.5e-29 132.9 98 65.3
FAN19G1139 Fragaria x ananassa HOM05D003144 ORTHO05D003539 1.9e-29 132.5 100 62.0
Prupe.7G158200 Prunus persica HOM05D003144 ORTHO05D003539 1.9e-29 132.5 98 65.3
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 2.5e-29 132.1 97 66.0
MD02G1143500 Malus domestica HOM05D003144 ORTHO05D003539 7.4e-29 130.6 96 63.5
Thecc.01G031300 Theobroma cacao HOM05D003144 ORTHO05D003539 7.4e-29 130.6 98 63.3
Haze_15060 Corylus avellana HOM05D003144 ORTHO05D003539 9.7e-29 130.2 98 61.2
Potri.005G120400 Populus trichocarpa HOM05D003144 ORTHO05D003539 2.8e-28 128.6 98 62.2
Aqoxy6G01164 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 4.8e-28 127.9 105 60.0
MSTRG.2483 Avicennia marina HOM05D003144 ORTHO05D003539 4.8e-28 127.9 98 61.2
Gohir.A12G063500 Gossypium hirsutum HOM05D003144 ORTHO05D003539 1.1e-27 126.7 98 63.3
Eucgr.H03322 Eucalyptus grandis HOM05D003144 ORTHO05D003539 1.4e-27 126.3 97 63.9
Duzib264G0171 Durio zibethinus HOM05D003144 ORTHO05D003539 1.8e-27 125.9 98 63.3
Dinv40014 Davidia involucrata HOM05D003144 ORTHO05D003539 2.4e-27 125.6 91 68.1
Gohir.D12G063300 Gossypium hirsutum HOM05D003144 ORTHO05D003539 3.1e-27 125.2 98 63.3
Gorai.008G066600 Gossypium raimondii HOM05D003144 ORTHO05D003539 3.1e-27 125.2 98 63.3
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 3.1e-27 125.2 97 57.7
Sabra07G0018700 Salix brachista HOM05D003144 ORTHO05D003539 3.1e-27 125.2 99 61.6
Thecc.01G030700 Theobroma cacao HOM05D003144 ORTHO05D003539 3.1e-27 125.2 98 60.2
Nn1g04920 Nelumbo nucifera HOM05D003144 ORTHO05D003539 4.1e-27 124.8 93 65.6
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 4.1e-27 124.8 99 60.6
Sed0003710 Sechium edule HOM05D003144 ORTHO05D003539 5.3e-27 124.4 100 57.0
Oeu027432.1 Olea europaea HOM05D003144 ORTHO05D003539 9.1e-27 123.6 100 61.0
Ciclev10026261m.g Citrus clementina HOM05D003144 ORTHO05D003539 1.5e-26 122.9 99 60.6
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 2.0e-26 122.5 92 66.3
Psat4g094920 Pisum sativum HOM05D003144 ORTHO05D003539 2.6e-26 122.1 93 65.6
MELO3C007843.2 Cucumis melo HOM05D003144 ORTHO05D003539 3.4e-26 121.7 100 57.0
Nitab4.5_0000136g0260 Nicotiana tabacum HOM05D003144 ORTHO05D003539 3.4e-26 121.7 98 56.1
CsaV3_6G046460 Cucumis sativus L. HOM05D003144 ORTHO05D003539 4.5e-26 121.3 100 56.0
Nitab4.5_0008397g0010 Nicotiana tabacum HOM05D003144 ORTHO05D003539 5.9e-26 120.9 98 55.1
Sabra05G0099200 Salix brachista HOM05D003144 ORTHO05D003539 5.9e-26 120.9 97 59.8
PGR102G0163 Punica granatum HOM05D003144 ORTHO05D003539 1.0e-25 120.2 95 61.1
unitig_736.g22638 Utricularia gibba HOM05D003144 ORTHO05D003539 1.0e-25 120.2 99 56.6
CiPaw.01G044800 Carya illinoinensis HOM05D003144 ORTHO05D003539 1.3e-25 119.8 87 71.3
CiPaw.01G045400 Carya illinoinensis HOM05D003144 ORTHO05D003539 1.3e-25 119.8 87 71.3
Cc07_g09870 Coffea canephora HOM05D003144 ORTHO05D003539 1.7e-25 119.4 92 58.7
PSO675G8035 Papaver somniferum HOM05D003144 ORTHO05D003539 1.7e-25 119.4 97 59.8
CiPaw.01G045600 Carya illinoinensis HOM05D003144 ORTHO05D003539 2.2e-25 119.0 87 71.3
ClCG01G019760 Citrullus lanatus HOM05D003144 ORTHO05D003539 2.2e-25 119.0 100 56.0
Peaxi162Scf00366g00815 Petunia axillaris HOM05D003144 ORTHO05D003539 2.2e-25 119.0 98 55.1
Peaxi162Scf00008g03417 Petunia axillaris HOM05D003144 ORTHO05D003539 3.8e-25 118.2 93 59.1
CiPaw.01G045100 Carya illinoinensis HOM05D003144 ORTHO05D003539 6.5e-25 117.5 87 70.1
PSO339G2437 Papaver somniferum HOM05D003144 ORTHO05D003539 6.5e-25 117.5 97 59.8
PSO675G6275 Papaver somniferum HOM05D003144 ORTHO05D003539 6.5e-25 117.5 97 59.8
SalBow8G4131 Salvia bowleyana HOM05D003144 ORTHO05D003539 6.5e-25 117.5 97 53.6
Migut.H02525 Erythranthe guttata HOM05D003144 ORTHO05D003539 8.5e-25 117.1 98 56.1
HPP92_013478 Vanilla planifolia HOM05D003144 ORTHO05D003539 1.1e-24 116.7 94 59.6
SalBow8G0597 Salvia bowleyana HOM05D003144 ORTHO05D003539 2.5e-24 115.5 97 53.6
PSO541G4762 Papaver somniferum HOM05D003144 ORTHO05D003539 3.2e-24 115.2 97 58.8
Solyc02g062570.4 Solanum lycopersicum HOM05D003144 ORTHO05D003539 3.2e-24 115.2 98 56.1
PGSC0003DMG400015511 Solanum tuberosum HOM05D003144 ORTHO05D003539 4.2e-24 114.8 98 59.2
Atru.chr3.630 Acer truncatum HOM05D003144 ORTHO05D003539 5.5e-24 114.4 98 58.2
PGSC0003DMG402003606 Solanum tuberosum HOM05D003144 ORTHO05D003539 5.5e-24 114.4 98 51.0
Sc03g0003130 Simmondsia chinensis HOM05D003144 ORTHO05D003539 9.4e-24 113.6 98 58.2
Medtr8g077120 Medicago truncatula HOM05D003144 ORTHO05D003539 1.2e-23 113.2 72 81.9
Solyc02g062580.3 Solanum lycopersicum HOM05D003144 ORTHO05D003539 1.2e-23 113.2 98 59.2
Sopen02g013600 Solanum pennellii HOM05D003144 ORTHO05D003539 1.6e-23 112.8 98 57.1
SalBow1G1618 Salvia bowleyana HOM05D003144 ORTHO05D003539 2.1e-23 112.5 92 54.3
Hund13998 Selenicereus undatus HOM05D003144 ORTHO05D003539 2.1e-23 112.5 98 55.1
Lj4A205T21 Lonicera japonica HOM05D003144 ORTHO05D003539 2.7e-23 112.1 95 58.9
CANSAT01G2043 Cannabis sativa HOM05D003144 ORTHO05D003539 3.6e-23 111.7 99 56.6
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 3.6e-23 111.7 94 56.4
PSO541G6245 Papaver somniferum HOM05D003144 ORTHO05D003539 3.6e-23 111.7 97 57.7
TWI09G1569 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 3.6e-23 111.7 95 58.9
CAN.G53.3 Capsicum annuum HOM05D003144 ORTHO05D003539 4.7e-23 111.3 98 56.1
EL10As8g23913 Beta vulgaris HOM05D003144 ORTHO05D003539 6.1e-23 110.9 98 53.1
Solyc02g084970.4 Solanum lycopersicum HOM05D003144 ORTHO05D003539 1.0e-22 110.2 98 50.0
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.8e-22 109.4 98 51.0
Sopen00g011620 Solanum pennellii HOM05D003144 ORTHO05D003539 3.0e-22 108.6 98 55.1
Sopen02g013590 Solanum pennellii HOM05D003144 ORTHO05D003539 3.0e-22 108.6 98 55.1
CAN.G358.47 Capsicum annuum HOM05D003144 ORTHO05D003539 3.9e-22 108.2 98 48.0
AL8G45090 Arabidopsis lyrata HOM05D003144 ORTHO05D003539 1.1e-21 106.7 98 54.1
Peaxi162Scf00366g00819 Petunia axillaris HOM05D003144 ORTHO05D003539 3.3e-21 105.1 95 55.8
Sed0014839 Sechium edule HOM05D003144 ORTHO05D003539 3.3e-21 105.1 106 50.0
Ah.03g141130 Amaranthus hybridus HOM05D003144 ORTHO05D003539 7.4e-21 104.0 98 51.0
CDE11G1071 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 7.4e-21 104.0 93 49.5
Thhalv10004725m.g Eutrema salsugineum HOM05D003144 ORTHO05D003539 7.4e-21 104.0 98 52.0
Carub.0008s2807 Capsella rubella HOM05D003144 ORTHO05D003539 1.3e-20 103.2 98 52.0
Manes.01G138300 Manihot esculenta HOM05D003144 ORTHO05D003539 1.3e-20 103.2 95 54.7
CARHR281300 Cardamine hirsuta HOM05D003144 ORTHO05D003539 1.7e-20 102.8 98 51.0
CDE06G2543 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 1.7e-20 102.8 98 52.0
BcaC03g18414 Brassica carinata HOM05D003144 ORTHO05D003539 2.2e-20 102.4 98 51.0
BcaC03g18420 Brassica carinata HOM05D003144 ORTHO05D003539 2.2e-20 102.4 98 51.0
HanXRQChr16g0530671 Helianthus annuus HOM05D003144 ORTHO05D003539 2.8e-20 102.1 81 59.3
THA.LOC104819202 Tarenaya hassleriana HOM05D003144 ORTHO05D003539 2.8e-20 102.1 96 52.1
Zm00001eb188310 Zea mays HOM05D003144 ORTHO05D003539 2.8e-20 102.1 96 53.1
BcaB07g29666 Brassica carinata HOM05D003144 ORTHO05D003539 3.7e-20 101.7 98 51.0
A07p17510 Brassica napus HOM05D003144 ORTHO05D003539 3.7e-20 101.7 98 52.0
C02p64930 Brassica napus HOM05D003144 ORTHO05D003539 4.8e-20 101.3 98 50.0
Sp2g30280 Schrenkiella parvula HOM05D003144 ORTHO05D003539 4.8e-20 101.3 98 50.0
Sopen02g029640 Solanum pennellii HOM05D003144 ORTHO05D003539 4.8e-20 101.3 98 48.0
AL5G31280 Arabidopsis lyrata HOM05D003144 ORTHO05D003539 6.3e-20 100.9 98 53.1
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 6.3e-20 100.9 95 46.3
PGSC0003DMG401003606 Solanum tuberosum HOM05D003144 ORTHO05D003539 6.3e-20 100.9 74 56.8
AT3G50920 Arabidopsis thaliana HOM05D003144 ORTHO05D003539 8.2e-20 100.5 98 53.1
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 1.1e-19 100.1 98 45.9
Sp5g11310 Schrenkiella parvula HOM05D003144 ORTHO05D003539 1.4e-19 99.8 98 52.0
Aa31LG1G14970 Aethionema arabicum HOM05D003144 ORTHO05D003539 3.1e-19 98.6 98 46.9
BcaB02g10029 Brassica carinata HOM05D003144 ORTHO05D003539 3.1e-19 98.6 98 50.0
Carub.0005s1731 Capsella rubella HOM05D003144 ORTHO05D003539 3.1e-19 98.6 98 52.0
Thhalv10010693m.g Eutrema salsugineum HOM05D003144 ORTHO05D003539 3.1e-19 98.6 98 50.0
Aqoxy1G03997 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 4.1e-19 98.2 93 51.6
DCAR_025959 Daucus carota HOM05D003144 ORTHO05D003539 6.9e-19 97.4 94 50.0
Os02g0704500 Oryza sativa ssp. japonica HOM05D003144 ORTHO05D003539 6.9e-19 97.4 82 57.3
A09p09990 Brassica napus HOM05D003144 ORTHO05D003539 9.1e-19 97.1 98 51.0
C07p25440 Brassica napus HOM05D003144 ORTHO05D003539 1.2e-18 96.7 98 49.0
BcaC06g34705 Brassica carinata HOM05D003144 ORTHO05D003539 2.0e-18 95.9 98 48.0
Aqoxy1G03996 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 3.4e-18 95.1 93 47.3
SalBow1G1785 Salvia bowleyana HOM05D003144 ORTHO05D003539 3.4e-18 95.1 76 52.6
SalBow1G2527 Salvia bowleyana HOM05D003144 ORTHO05D003539 3.4e-18 95.1 76 52.6
CARHR160490 Cardamine hirsuta HOM05D003144 ORTHO05D003539 7.7e-18 94.0 96 51.0
Aa31LG4G19020 Aethionema arabicum HOM05D003144 ORTHO05D003539 1.7e-17 92.8 98 49.0
BcaNung05718 Brassica carinata HOM05D003144 ORTHO05D003539 1.7e-17 92.8 98 45.9
A02p44530 Brassica napus HOM05D003144 ORTHO05D003539 2.9e-17 92.0 98 46.9
BcaC06g33065 Brassica carinata HOM05D003144 ORTHO05D003539 6.5e-17 90.9 98 50.0
Ca_22327_v3 Cicer arietinum L. HOM05D003144 ORTHO05D003539 8.5e-17 90.5 67 73.1
CAN.G53.4 Capsicum annuum HOM05D003144 ORTHO05D003539 1.1e-16 90.1 98 44.9
Zm00001eb252000 Zea mays HOM05D003144 ORTHO05D003539 2.5e-16 89.0 96 50.0
BcaC04g23127 Brassica carinata HOM05D003144 ORTHO05D003539 3.2e-16 88.6 98 46.9
BcaC06g33334 Brassica carinata HOM05D003144 ORTHO05D003539 3.2e-16 88.6 98 46.9
C07p46050 Brassica napus HOM05D003144 ORTHO05D003539 3.2e-16 88.6 98 46.9
SEGI_19312 Sequoiadendron giganteum HOM05D003144 ORTHO05D003539 4.2e-16 88.2 89 50.6
SEGI_25520 Sequoiadendron giganteum HOM05D003144 ORTHO05D003539 4.2e-16 88.2 89 50.6
AUR62007599 Chenopodium quinoa HOM05D003144 ORTHO05D003539 5.5e-16 87.8 88 48.9
C09p11850 Brassica napus HOM05D003144 ORTHO05D003539 7.2e-16 87.4 98 45.9
Ca_22297_v3 Cicer arietinum L. HOM05D003144 ORTHO05D003539 1.6e-15 86.3 66 71.2
BraA03t13911Z Brassica rapa HOM05D003144 ORTHO05D003539 8.0e-15 84.0 98 44.9
THA.LOC104826672 Tarenaya hassleriana HOM05D003144 ORTHO05D003539 8.0e-15 84.0 98 45.9
A03p48030 Brassica napus HOM05D003144 ORTHO05D003539 3.0e-14 82.0 85 49.4
PSO675G7033 Papaver somniferum HOM05D003144 ORTHO05D003539 3.0e-14 82.0 71 57.7
BolC7t45122H Brassica oleracea HOM05D003144 ORTHO05D003539 6.7e-14 80.9 91 49.5
BcaC06g33333 Brassica carinata HOM05D003144 ORTHO05D003539 1.1e-13 80.1 76 52.6
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 1.1e-13 80.1 97 40.2
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 2.0e-13 79.3 95 52.6
C08p26130 Brassica napus HOM05D003144 ORTHO05D003539 1.8e-11 72.8 93 47.3
BolC8t50231H Brassica oleracea HOM05D003144 ORTHO05D003539 4.1e-11 71.6 92 45.7
Nitab4.5_0001617g0030 Nicotiana tabacum HOM05D003144 ORTHO05D003539 3.5e-10 68.6 55 60.0
A09p44030 Brassica napus HOM05D003144 ORTHO05D003539 2.9e-09 65.5 96 37.5
BraA09t39861Z Brassica rapa HOM05D003144 ORTHO05D003539 2.9e-09 65.5 96 37.5
BcaC07g39560 Brassica carinata HOM05D003144 ORTHO05D003539 6.5e-09 64.3 65 50.8
Aqoxy1G03993 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 1.9e-08 62.8 49 61.2
AT5G66450 Arabidopsis thaliana HOM05D003144 ORTHO05D003539 2.5e-08 62.4 52 59.6
TWI09G0554 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 7.2e-08 60.8 105 36.2
BraA07t29471Z Brassica rapa HOM05D003144 ORTHO05D003539 9.4e-08 60.5 52 59.6
SMO367G0089 Selaginella moellendorffii HOM05D003144 ORTHO05D003539 9.4e-08 60.5 99 32.3
Psat7g022240 Pisum sativum HOM05D003144 ORTHO05D003539 4.7e-07 58.2 51 60.8
RcHm_v2.0_Chr2g0100931 Rosa chinensis HOM05D003144 ORTHO05D003539 1.4e-06 56.6 48 54.2


User provided reference genes

Program Settings