Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 8.9e-63 243.4 123 100.0
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 3.4e-54 214.9 123 86.2
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 7.6e-54 213.8 123 87.0
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.7e-53 212.6 123 85.4
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 2.2e-53 212.2 125 88.8
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 7.8e-51 203.8 125 84.0
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 8.1e-48 193.7 126 82.5
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 6.0e-43 177.6 119 78.2
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 3.9e-42 174.9 123 75.6
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 8.7e-42 173.7 123 77.2
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.5e-41 172.9 119 76.5
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 4.3e-41 171.4 119 76.5
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 9.6e-41 170.2 121 72.7
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.3e-40 169.9 122 73.0
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 4.8e-40 167.9 121 72.7
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.4e-39 166.4 119 73.1
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.4e-39 166.4 121 71.1
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.8e-39 166.0 121 70.2
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 2.9e-37 158.7 123 68.3
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 3.8e-37 158.3 123 69.1
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 4.9e-37 157.9 126 64.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.5e-36 154.5 123 65.0
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.1e-35 152.5 124 66.9
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 5.1e-34 147.9 123 63.4
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 5.6e-33 144.4 126 61.9
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 7.4e-33 144.1 126 62.7
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.0e-29 133.7 120 63.3
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 2.2e-29 132.5 127 57.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 1.9e-25 119.4 126 53.2
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 3.3e-25 118.6 124 52.4
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.1e-23 113.6 126 53.2
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.7e-21 106.3 127 52.0
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 6.5e-21 104.4 128 44.5
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 2.7e-19 99.0 123 47.2
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 3.6e-19 98.6 130 42.3
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 6.1e-19 97.8 108 53.7
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.0e-18 97.1 126 50.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.4e-18 96.7 134 47.0
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.8e-18 96.3 123 46.3
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.8e-18 96.3 123 45.5
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.0e-18 95.5 130 45.4
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.0e-18 95.5 134 44.8
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.9e-18 95.1 136 44.1
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 8.8e-18 94.0 121 46.3
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.1e-17 93.6 126 45.2
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.5e-17 92.4 135 45.2
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.5e-17 92.4 135 45.2
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 7.4e-17 90.9 118 47.5
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 7.4e-17 90.9 130 43.8
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 9.7e-17 90.5 126 45.2
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 9.7e-17 90.5 126 45.2
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 9.7e-17 90.5 126 45.2
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 9.7e-17 90.5 126 46.8
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-16 90.1 126 45.2
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-16 90.1 126 45.2
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.3e-16 90.1 126 47.6
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-16 90.1 127 44.9
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-16 90.1 134 44.0
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.8e-16 89.0 131 43.5
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 4.8e-16 88.2 126 44.4
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-15 86.7 133 42.9
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.4e-15 86.7 126 43.7
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.4e-15 86.7 132 43.9
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.8e-15 86.3 125 45.6
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-15 85.9 127 45.7
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-15 85.9 126 44.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-15 85.9 126 45.2
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 2.4e-15 85.9 126 45.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 2.4e-15 85.9 127 45.7
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.4e-15 85.9 126 44.4
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 2.4e-15 85.9 125 42.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.1e-15 85.5 134 44.0
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 4.1e-15 85.1 127 45.7
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-15 85.1 126 44.4
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-15 85.1 127 45.7
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 4.1e-15 85.1 127 45.7
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 4.1e-15 85.1 126 44.4
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 5.3e-15 84.7 127 45.7
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.9e-15 84.3 113 47.8
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 6.9e-15 84.3 126 44.4
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 6.9e-15 84.3 127 45.7
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.9e-15 84.3 127 45.7
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 9.1e-15 84.0 127 45.7
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 9.1e-15 84.0 127 45.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.2e-14 83.6 126 44.4
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.5e-14 83.2 126 43.7
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.5e-14 83.2 118 41.5
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.0e-14 82.8 126 46.8
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-14 82.4 136 44.1
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 2.6e-14 82.4 136 44.1
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 5.9e-14 81.3 129 46.5
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.9e-14 81.3 123 43.1
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.7e-14 80.9 115 46.1
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-13 79.7 135 43.0
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-13 79.7 127 43.3
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.2e-13 79.3 134 40.3
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 2.2e-13 79.3 139 39.6
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 2.9e-13 79.0 125 45.6
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.8e-13 78.6 133 41.4
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.5e-13 77.8 124 42.7
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 8.5e-13 77.4 129 41.9
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-12 77.0 130 40.0
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.1e-12 77.0 127 36.2
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.1e-12 77.0 112 42.9
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.4e-12 76.6 137 40.9
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.4e-12 76.6 125 44.8
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 2.5e-12 75.9 121 37.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 3.2e-12 75.5 131 40.5
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 3.2e-12 75.5 131 40.5
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 3.2e-12 75.5 131 40.5
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.2e-12 75.5 130 40.0
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.2e-12 75.5 71 56.3
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 4.2e-12 75.1 112 42.9
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.2e-12 75.1 137 38.0
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 7.2e-12 74.3 131 40.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 7.2e-12 74.3 111 42.3
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 9.4e-12 73.9 59 59.3
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.2e-11 73.6 135 38.5
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.6e-11 72.0 131 38.9
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.7e-11 71.6 127 40.9
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 4.7e-11 71.6 128 42.2
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-11 71.2 130 36.9
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 6.1e-11 71.2 136 38.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 6.1e-11 71.2 95 47.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.0e-10 70.5 58 56.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.0e-10 70.5 128 43.0
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-10 70.1 78 46.2
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 3.0e-10 68.9 115 41.7
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.9e-10 68.6 48 60.4
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 6.7e-10 67.8 133 39.1
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 6.7e-10 67.8 125 39.2
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 6.7e-10 67.8 133 39.1
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 6.7e-10 67.8 125 39.2
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-09 67.0 129 35.7
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.1e-09 67.0 125 40.0
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.1e-09 67.0 110 37.3
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-09 67.0 127 37.0
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.6e-09 65.9 139 37.4
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 2.6e-09 65.9 58 55.2
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.3e-09 65.5 106 42.5
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 3.3e-09 65.5 109 43.1
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 7.4e-09 64.3 110 42.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 7.4e-09 64.3 132 34.1
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 7.4e-09 64.3 132 34.1
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 7.4e-09 64.3 132 34.1
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.8e-08 62.4 118 38.1
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 3.7e-08 62.0 163 32.5
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.8e-08 61.6 53 50.9
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 4.8e-08 61.6 119 38.7
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.2e-08 60.8 122 35.2
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.1e-07 60.5 120 40.0
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 1.4e-07 60.1 92 35.9
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-07 59.7 37 64.9
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.8e-07 59.7 117 34.2
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.8e-07 59.7 109 33.9
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.8e-07 59.7 123 35.0
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.4e-07 59.3 110 38.2
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 3.1e-07 58.9 56 46.4
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 3.1e-07 58.9 113 36.3
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.1e-07 58.5 117 36.8
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.3e-07 58.2 114 35.1
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 5.3e-07 58.2 114 36.0
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 7.0e-07 57.8 119 40.3
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 7.0e-07 57.8 119 40.3
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 7.0e-07 57.8 119 40.3
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.0e-07 57.8 117 34.2
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 9.1e-07 57.4 121 31.4
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.2e-06 57.0 52 50.0
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.5e-06 56.6 127 37.0
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 2.6e-06 55.8 117 35.9
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 2.6e-06 55.8 114 36.0
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 3.4e-06 55.5 169 32.0
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.5e-06 55.1 113 32.7
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.9e-06 54.7 86 38.4
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 5.9e-06 54.7 98 38.8


User provided reference genes

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