Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.3e-64 249.6 124 100.0
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 2.2e-53 212.2 125 88.8
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 5.0e-53 211.1 124 83.1
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 7.4e-49 197.2 125 80.8
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.3e-48 196.4 125 80.8
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-47 193.4 125 80.8
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-47 192.2 125 79.2
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 1.1e-44 183.3 124 75.0
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 2.5e-44 182.2 124 76.6
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 3.0e-42 175.3 116 77.6
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 6.7e-42 174.1 124 74.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.7e-41 171.0 122 73.0
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 7.4e-41 170.6 116 75.9
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 9.7e-41 170.2 122 73.0
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 2.2e-40 169.1 116 75.9
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 4.8e-40 167.9 122 73.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 9.1e-39 163.7 120 69.2
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.5e-38 162.9 122 71.3
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.3e-37 159.8 128 64.8
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 4.2e-36 154.8 125 68.0
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.6e-35 152.9 125 68.8
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 7.9e-35 150.6 125 64.0
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.0e-34 150.2 125 64.8
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 9.7e-33 143.7 125 63.2
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 4.8e-32 141.4 128 60.9
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 6.3e-32 141.0 124 63.7
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 8.2e-32 140.6 128 60.2
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 4.5e-30 134.8 129 60.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 6.7e-26 120.9 127 53.5
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 9.7e-25 117.1 125 50.4
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.0e-21 107.1 125 52.8
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.7e-21 106.3 129 53.5
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 2.9e-21 105.5 130 46.2
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.2e-19 100.1 126 48.4
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.6e-19 99.8 136 46.3
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 3.6e-19 98.6 137 45.3
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.0e-18 97.1 136 46.3
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.0e-18 97.1 136 46.3
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.3e-18 95.9 136 45.6
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 3.0e-18 95.5 109 51.4
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 4.0e-18 95.1 124 46.8
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 5.2e-18 94.7 122 47.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 5.2e-18 94.7 119 48.7
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.2e-18 94.7 133 42.1
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 5.2e-18 94.7 124 45.2
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 5.2e-18 94.7 126 46.0
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 6.8e-18 94.4 128 47.7
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.5e-17 93.2 133 42.9
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.4e-17 91.7 129 45.7
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.8e-17 90.5 127 45.7
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.3e-16 90.1 132 43.2
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.7e-16 89.7 132 44.7
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-16 89.4 126 43.7
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.2e-16 89.4 126 43.7
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.2e-16 89.4 126 43.7
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.8e-16 89.0 126 43.7
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.8e-16 89.0 126 43.7
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.7e-16 88.6 132 42.4
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.7e-16 88.6 124 43.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.8e-16 88.2 126 43.7
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.8e-16 88.2 131 42.7
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 4.8e-16 88.2 133 45.1
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.3e-16 87.4 126 42.9
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.1e-15 87.0 126 42.9
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-15 87.0 126 42.9
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.1e-15 87.0 134 43.3
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.8e-15 86.3 129 45.0
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.4e-15 85.9 126 42.1
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.1e-15 85.5 126 42.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 4.1e-15 85.1 126 37.3
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 7.0e-15 84.3 134 38.8
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 9.1e-15 84.0 126 42.1
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 9.1e-15 84.0 126 42.1
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 126 41.3
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-14 83.6 126 41.3
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.6e-14 83.2 125 41.6
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.6e-14 83.2 129 43.4
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-14 83.2 125 42.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.6e-14 83.2 129 44.2
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.0e-14 82.8 134 42.5
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-14 82.8 127 42.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-14 82.8 127 42.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.0e-14 82.8 127 42.5
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 2.7e-14 82.4 125 42.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-14 82.4 133 42.1
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-14 82.4 125 42.4
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 2.7e-14 82.4 125 42.4
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 2.7e-14 82.4 133 42.1
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 2.7e-14 82.4 125 47.2
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-14 82.0 127 42.5
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 3.5e-14 82.0 127 42.5
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.5e-14 82.0 127 42.5
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.5e-14 82.0 129 42.6
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 4.5e-14 81.6 127 42.5
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 4.5e-14 81.6 127 42.5
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.5e-14 81.6 134 41.0
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 7.7e-14 80.9 131 41.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.0e-13 80.5 129 42.6
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.3e-13 80.1 132 41.7
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-13 80.1 132 41.7
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-13 80.1 132 41.7
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-13 79.7 140 42.1
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.7e-13 79.7 111 42.3
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.2e-13 79.3 134 41.0
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 5.0e-13 78.2 127 40.9
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 5.0e-13 78.2 132 38.6
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 5.0e-13 78.2 124 45.2
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 6.5e-13 77.8 111 42.3
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.5e-12 76.6 61 62.3
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.5e-12 75.9 131 41.2
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 2.5e-12 75.9 132 40.2
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 3.2e-12 75.5 127 44.1
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.2e-12 75.5 128 38.3
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 4.2e-12 75.1 60 60.0
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 5.5e-12 74.7 63 57.1
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 5.5e-12 74.7 137 39.4
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 9.4e-12 73.9 132 40.2
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.6e-11 73.2 141 37.6
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.6e-11 73.2 96 45.8
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.6e-11 73.2 139 37.4
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 2.1e-11 72.8 129 41.9
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.7e-11 72.4 126 40.5
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.7e-11 72.4 126 40.5
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.7e-11 72.4 113 43.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.6e-11 72.0 62 56.5
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 6.1e-11 71.2 122 39.3
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.0e-10 70.5 132 39.4
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.4e-10 70.1 55 56.4
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-10 69.7 131 40.5
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-10 69.7 131 40.5
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.8e-10 69.7 114 37.7
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.0e-10 68.9 67 49.3
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.0e-10 68.9 129 41.1
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 4.0e-10 68.6 62 53.2
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 4.0e-10 68.6 62 53.2
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 4.0e-10 68.6 62 53.2
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 4.0e-10 68.6 124 38.7
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.8e-10 67.4 130 36.2
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 8.8e-10 67.4 137 38.7
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 8.8e-10 67.4 112 38.4
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.5e-09 66.6 62 53.2
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.5e-09 66.6 125 39.2
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 2.6e-09 65.9 113 42.5
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 4.4e-09 65.1 60 45.0
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.7e-09 64.7 117 35.9
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 5.7e-09 64.7 119 36.1
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 7.5e-09 64.3 111 43.2
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 7.5e-09 64.3 114 33.3
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-08 63.5 161 33.5
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.3e-08 63.5 102 31.4
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.7e-08 63.2 121 36.4
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.2e-08 62.8 117 35.9
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 117 32.5
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 114 37.7
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 2.8e-08 62.4 49 53.1
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.9e-08 61.6 105 41.0
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.9e-08 61.6 114 34.2
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 4.9e-08 61.6 116 36.2
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-08 61.2 119 38.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 6.3e-08 61.2 119 38.7
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 6.3e-08 61.2 119 38.7
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 6.3e-08 61.2 116 34.5
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 6.3e-08 61.2 113 33.6
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 8.3e-08 60.8 98 39.8
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.1e-07 60.5 120 39.2
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 1.1e-07 60.5 117 37.6
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.4e-07 60.1 128 38.3
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-07 59.7 37 64.9
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.8e-07 59.7 97 40.2
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.4e-07 59.3 114 36.0
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.1e-07 58.9 118 36.4
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.1e-07 58.5 47 48.9
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 9.2e-07 57.4 113 39.8
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 3.5e-06 55.5 112 34.8
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 3.5e-06 55.5 110 40.0
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 4.5e-06 55.1 45 60.0
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 7.7e-06 54.3 124 32.3


User provided reference genes

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