Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 1.0e-128 463.4 232 100.0
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.7e-99 366.3 232 81.5
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 1.1e-98 363.6 232 81.0
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 5.5e-98 361.3 232 79.7
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 3.7e-94 348.6 232 76.3
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 6.3e-94 347.8 232 76.3
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 6.3e-94 347.8 232 76.3
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 4.1e-93 345.1 232 75.9
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 5.4e-93 344.7 232 74.6
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 1.2e-92 343.6 232 75.4
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 1.2e-92 343.6 232 75.4
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 2.0e-92 342.8 232 74.6
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 5.9e-92 341.3 232 75.4
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 7.8e-92 340.9 232 75.4
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.0e-91 340.5 232 73.7
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 2.9e-91 339.0 233 75.1
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 2.9e-91 339.0 257 70.0
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 3.8e-91 338.6 232 73.7
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 6.6e-91 337.8 232 73.3
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 6.6e-91 337.8 232 73.3
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 8.6e-91 337.4 230 73.9
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.1e-90 337.0 232 73.3
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.1e-90 337.0 232 72.8
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 1.1e-90 337.0 231 73.2
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 1.5e-90 336.7 230 73.9
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 1.5e-90 336.7 230 73.9
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 1.5e-90 336.7 230 73.9
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.5e-90 335.9 232 72.4
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 3.3e-90 335.5 232 72.4
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 3.3e-90 335.5 232 72.8
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 9.5e-90 334.0 232 72.0
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 1.6e-89 333.2 232 73.7
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 1.6e-89 333.2 232 72.8
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 2.1e-89 332.8 230 74.3
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 2.8e-89 332.4 232 72.0
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 2.8e-89 332.4 230 73.5
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 2.8e-89 332.4 233 73.8
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 3.6e-89 332.0 232 71.6
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 3.6e-89 332.0 230 73.5
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 3.6e-89 332.0 232 72.0
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 3.6e-89 332.0 232 72.4
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 6.1e-89 331.3 232 71.1
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 1.0e-88 330.5 232 71.1
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 1.0e-88 330.5 232 73.7
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 1.0e-88 330.5 230 72.6
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 2.3e-88 329.3 232 70.7
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 4.0e-88 328.6 232 70.7
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 4.0e-88 328.6 232 72.0
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 5.2e-88 328.2 232 71.1
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 6.8e-88 327.8 232 70.3
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 6.8e-88 327.8 232 70.3
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 6.8e-88 327.8 232 70.3
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 6.8e-88 327.8 230 72.2
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 6.8e-88 327.8 230 72.2
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.2e-87 327.0 232 70.3
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 1.2e-87 327.0 232 70.3
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 1.2e-87 327.0 232 70.3
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 1.2e-87 327.0 230 72.2
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 1.5e-87 326.6 230 71.3
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 2.6e-87 325.9 230 72.2
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 2.6e-87 325.9 230 71.3
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 3.4e-87 325.5 232 70.3
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 9.8e-87 323.9 230 71.3
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.3e-86 323.6 230 69.1
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 3.7e-86 322.0 230 69.1
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 6.4e-86 321.2 236 69.9
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 8.3e-86 320.9 232 70.3
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 5.4e-85 318.2 232 69.4
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 7.0e-85 317.8 229 69.9
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 7.0e-85 317.8 230 70.4
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 7.0e-85 317.8 232 68.5
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 9.2e-85 317.4 230 68.7
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 9.2e-85 317.4 232 69.8
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 2.7e-84 315.8 232 69.4
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.3e-83 313.5 232 68.1
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.7e-83 313.2 232 68.5
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.7e-83 313.2 232 68.5
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 2.3e-83 312.8 232 68.1
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 3.9e-83 312.0 232 68.1
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 5.6e-82 308.1 230 68.7
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 3.6e-81 305.4 221 70.6
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.6e-81 305.4 246 64.2
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 1.1e-80 303.9 209 74.2
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 8.9e-80 300.8 216 68.5
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 1.2e-79 300.4 238 65.5
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 2.0e-79 299.7 230 66.1
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 3.2e-77 292.4 240 62.1
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 7.0e-77 291.2 230 66.5
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 9.2e-77 290.8 232 65.1
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 2.7e-76 289.3 203 72.4
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.7e-75 286.6 212 69.3
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 8.6e-75 284.3 214 69.6
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 1.1e-74 283.9 231 62.8
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 1.2e-73 280.4 203 67.0
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 6.8e-72 274.6 207 68.1
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 4.4e-71 271.9 229 60.7
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 6.4e-70 268.1 198 69.2
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 2.3e-67 259.6 236 58.9
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.9e-67 258.8 134 91.8
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 2.4e-64 249.6 197 67.0
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.1e-64 249.2 198 66.7
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.8e-62 242.3 196 64.8
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-60 236.9 259 52.5
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 2.7e-60 236.1 178 68.5
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 5.6e-58 228.4 233 54.5
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 2.1e-57 226.5 205 57.1
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 9.0e-56 221.1 203 57.1
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.4e-53 213.8 112 88.4
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 1.2e-52 210.7 230 50.0
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 3.5e-52 209.1 212 51.9
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 4.6e-52 208.8 173 64.2
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 1.7e-51 206.8 230 52.2
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 2.3e-51 206.5 212 50.5
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.2e-46 189.9 206 51.9
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.4e-45 187.2 217 45.6
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 8.7e-43 177.9 205 47.3
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 5.5e-37 158.7 181 44.2
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 1.6e-36 157.1 177 50.8
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 4.8e-33 145.6 135 48.1
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.5e-31 140.6 145 49.7
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.9e-28 128.3 149 51.7
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.3e-25 120.9 207 39.1
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 3.7e-25 119.4 174 42.5
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.4e-23 112.8 171 43.3
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.5e-21 106.7 69 72.5
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.3e-18 96.3 252 34.1
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 7.4e-18 95.1 164 37.2
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 8.2e-17 91.7 66 69.7
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 8.2e-17 91.7 57 78.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.1e-16 89.4 159 38.4
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.2e-15 87.8 174 37.4
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 7.7e-15 85.1 50 82.0
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 1.1e-13 81.3 58 67.2
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 1.2e-07 61.2 33 78.8
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 2.9e-06 56.6 38 71.1


User provided reference genes

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