Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 5.5e-159 564.3 296 100.0
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 5.0e-120 434.9 293 82.9
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 2.2e-107 392.9 297 77.8
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 4.8e-78 295.4 303 57.1
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 3.1e-77 292.7 274 59.5
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.5e-76 290.4 301 62.5
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 5.5e-74 282.0 297 56.6
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 7.9e-73 278.1 274 64.6
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 3.7e-70 269.2 273 64.5
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.4e-58 230.7 195 67.7
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 9.3e-58 228.0 285 54.4
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 7.9e-57 224.9 197 59.9
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 2.5e-55 219.9 190 63.2
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 2.4e-53 213.4 289 50.9
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 3.1e-53 213.0 289 51.6
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 6.9e-53 211.8 175 66.9
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 2.6e-52 209.9 286 48.3
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 7.7e-52 208.4 290 53.8
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 2.2e-51 206.8 299 52.8
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 3.8e-51 206.1 290 53.4
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.9e-50 203.8 196 57.7
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 2.5e-50 203.4 295 46.8
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.7e-47 192.2 257 50.2
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 2.8e-46 189.9 175 59.4
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.8e-45 187.2 303 40.3
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 6.9e-45 185.3 187 52.9
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.6e-44 183.3 261 46.4
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 4.5e-44 182.6 295 43.7
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.7e-43 180.6 250 45.2
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.9e-43 179.9 289 41.9
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 3.8e-43 179.5 312 39.7
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.9e-42 177.2 290 43.8
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.9e-42 177.2 294 40.5
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 9.4e-42 174.9 252 46.8
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.2e-41 174.5 282 44.0
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.1e-39 167.9 209 51.2
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.0e-39 167.2 294 43.2
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.3e-39 166.4 256 42.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 4.4e-39 166.0 249 45.4
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 7.4e-39 165.2 293 42.3
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 5.3e-37 159.1 277 42.6
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.0e-36 157.1 254 42.5
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.6e-36 156.8 188 48.9
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 4.5e-36 156.0 205 44.9
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 5.9e-36 155.6 254 40.9
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 5.9e-36 155.6 197 48.2
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.3e-35 154.5 277 41.9
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.5e-35 151.8 277 40.8
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 1.9e-34 150.6 245 42.4
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 5.5e-34 149.1 176 47.7
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 7.2e-34 148.7 191 51.3
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 2.7e-33 146.7 285 41.1
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.7e-33 146.7 209 44.5
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.8e-32 144.1 193 44.6
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 5.2e-32 142.5 199 43.7
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 5.2e-32 142.5 179 44.7
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 6.7e-32 142.1 188 45.2
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 8.8e-32 141.7 265 44.9
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.2e-31 141.4 210 43.8
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.2e-31 141.4 274 41.6
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.5e-31 141.0 262 37.4
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.3e-31 139.8 211 42.2
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 3.3e-31 139.8 211 42.2
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 7.5e-31 138.7 251 38.2
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 7.5e-31 138.7 178 47.2
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.2e-30 137.1 255 39.2
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.2e-30 137.1 255 39.2
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 1.4e-29 134.4 131 60.3
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 2.4e-29 133.7 288 36.5
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.1e-29 133.3 201 41.8
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 3.5e-28 129.8 202 38.6
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 7.7e-28 128.6 250 36.8
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.0e-27 128.3 204 39.7
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.7e-27 127.5 206 37.4
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.2e-27 127.1 296 33.1
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 2.2e-27 127.1 215 41.4
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 5.0e-27 125.9 213 40.8
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 6.5e-27 125.6 218 39.0
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.5e-27 125.2 207 40.1
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 1.1e-26 124.8 300 41.0
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.5e-26 124.4 211 38.9
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.5e-26 124.4 197 41.1
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.5e-26 124.4 214 41.6
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.5e-26 122.5 247 37.2
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 7.2e-26 122.1 196 41.3
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 9.4e-26 121.7 222 37.8
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 9.4e-26 121.7 214 39.3
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 9.4e-26 121.7 262 36.6
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 3.6e-25 119.8 192 40.6
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 4.7e-25 119.4 205 36.6
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 1.0e-24 118.2 305 34.4
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.3e-24 117.1 183 42.1
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 6.8e-24 115.5 222 37.8
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.5e-23 114.4 154 50.0
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.6e-23 113.6 154 49.4
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 2.6e-23 113.6 206 36.4
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 3.7e-22 109.8 185 38.4
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 3.7e-22 109.8 185 37.8
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.4e-21 107.8 264 33.0
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 2.4e-21 107.1 209 35.9
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 5.4e-21 105.9 179 40.8
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.2e-20 104.8 184 39.7
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 1.6e-20 104.4 169 40.8
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 4.5e-20 102.8 184 40.2
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 4.5e-20 102.8 237 32.1
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 1.0e-19 101.7 185 39.5
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 1.3e-19 101.3 175 36.6
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.3e-19 100.5 192 38.0
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 2.9e-19 100.1 174 40.8
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 2.9e-19 100.1 193 38.3
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 1.1e-18 98.2 195 38.5
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 2.5e-18 97.1 150 39.3
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 2.5e-18 97.1 168 38.7
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 3.2e-18 96.7 184 38.6
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 4.2e-18 96.3 189 37.0
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 4.2e-18 96.3 211 32.7
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.2e-17 94.7 211 35.1
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.2e-17 94.7 180 36.1
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 1.2e-17 94.7 243 32.1
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 1.2e-17 94.7 212 32.5
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.7e-17 92.8 180 39.4
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 8.0e-17 92.0 198 37.4
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 8.0e-17 92.0 146 43.8
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 8.0e-17 92.0 173 36.4
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.0e-16 91.7 287 34.1
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.0e-16 90.1 184 40.2
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 4.0e-16 89.7 176 36.9
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 4.0e-16 89.7 170 40.6
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 4.0e-16 89.7 160 36.9
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 6.8e-16 89.0 175 38.3
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 8.8e-16 88.6 173 35.8
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 1.2e-15 88.2 188 36.2
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 1.5e-15 87.8 184 39.7
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.6e-15 87.0 143 44.1
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 3.4e-15 86.7 173 38.2
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 7.5e-15 85.5 252 36.1
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 7.5e-15 85.5 291 34.0
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 1.7e-14 84.3 174 36.8
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.7e-14 84.3 192 33.9
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 2.8e-14 83.6 191 35.1
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 6.3e-14 82.4 176 36.4
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.1e-13 81.6 168 36.3
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 9.2e-13 78.6 174 35.6
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 9.2e-13 78.6 174 35.6
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 1.2e-12 78.2 174 35.6
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 1.2e-12 78.2 174 36.8
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.7e-12 77.0 296 29.7
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 3.5e-12 76.6 202 32.2
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 4.5e-12 76.3 170 37.6
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 4.5e-12 76.3 178 32.6
VMungo0720G1682 Vigna mungo HOM05D004244 ORTHO05D004964 2.3e-11 73.9 129 39.5
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 3.8e-11 73.2 166 34.3
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 1.6e-09 67.8 255 25.5
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 2.1e-09 67.4 223 29.1
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 3.6e-09 66.6 130 34.6
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.8e-08 62.4 72 43.1
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 8.9e-08 62.0 148 35.8


User provided reference genes

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