Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23970 Trifolium pratense HOM05D003989 ORTHO05D004626 2.5e-118 428.7 206 100.0
Psat6g041800 Pisum sativum HOM05D003989 ORTHO05D004626 4.4e-107 391.3 206 90.8
Ca_09678_v3 Cicer arietinum L. HOM05D003989 ORTHO05D004626 6.0e-104 380.9 206 88.3
Medtr1g069900 Medicago truncatula HOM05D003989 ORTHO05D004626 1.9e-102 375.9 206 87.4
Medtr1g069870 Medicago truncatula HOM05D003989 ORTHO05D004626 4.9e-90 334.7 206 80.1
arahy.Tifrunner.gnm1.ann1.CXB6W4 Arachis hypogaea HOM05D003989 ORTHO05D004626 4.0e-84 315.1 207 72.0
Lj5g0003366 Lotus japonicus HOM05D003989 ORTHO05D004626 2.9e-82 308.9 206 71.8
Glyma.12G060500 Glycine max HOM05D003989 ORTHO05D004626 3.8e-82 308.5 206 70.9
Phvul.007G192500 Phaseolus vulgaris HOM05D003989 ORTHO05D004626 3.2e-81 305.4 206 71.4
Hma1.2p1_0273F.1_g109620 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 6.0e-80 301.2 206 68.4
Nitab4.5_0000470g0010 Nicotiana tabacum HOM05D003989 ORTHO05D004626 1.3e-79 300.1 206 69.4
ECA236G3729 Erigeron canadensis HOM05D003989 ORTHO05D004626 2.3e-79 299.3 206 69.4
Lalb_Chr06g0170491 Lupinus albus HOM05D003989 ORTHO05D004626 5.1e-79 298.1 204 69.1
HanXRQChr04g0115141 Helianthus annuus HOM05D003989 ORTHO05D004626 1.1e-78 297.0 206 68.9
Atru.chr5.1704 Acer truncatum HOM05D003989 ORTHO05D004626 1.5e-78 296.6 206 68.9
Nn1g02783 Nelumbo nucifera HOM05D003989 ORTHO05D004626 1.5e-78 296.6 212 67.5
Lalb_Chr21g0313881 Lupinus albus HOM05D003989 ORTHO05D004626 1.9e-78 296.2 204 68.6
Rhsim01G0262900 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.9e-78 296.2 206 67.5
Sabra05G0173700 Salix brachista HOM05D003989 ORTHO05D004626 2.5e-78 295.8 206 67.0
Potri.005G225100 Populus trichocarpa HOM05D003989 ORTHO05D004626 4.3e-78 295.0 206 67.5
Hund02930 Selenicereus undatus HOM05D003989 ORTHO05D004626 7.4e-78 294.3 206 66.5
vmacro02667 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 9.7e-78 293.9 206 68.4
MD05G1196300 Malus domestica HOM05D003989 ORTHO05D004626 1.3e-77 293.5 206 68.0
RcHm_v2.0_Chr6g0287951 Rosa chinensis HOM05D003989 ORTHO05D004626 1.6e-77 293.1 206 67.0
FvH4_2g21360 Fragaria vesca HOM05D003989 ORTHO05D004626 3.7e-77 292.0 206 67.0
EL10As5g23494 Beta vulgaris HOM05D003989 ORTHO05D004626 4.8e-77 291.6 206 65.0
MD10G1183600 Malus domestica HOM05D003989 ORTHO05D004626 4.8e-77 291.6 206 67.5
Actinidia07300 Actinidia chinensis HOM05D003989 ORTHO05D004626 6.3e-77 291.2 206 67.5
Dinv22401 Davidia involucrata HOM05D003989 ORTHO05D004626 6.3e-77 291.2 206 68.0
Solyc09g025250.4 Solanum lycopersicum HOM05D003989 ORTHO05D004626 6.3e-77 291.2 206 68.0
Sopen09g028270 Solanum pennellii HOM05D003989 ORTHO05D004626 6.3e-77 291.2 206 68.0
Oeu063312.1 Olea europaea HOM05D003989 ORTHO05D004626 8.2e-77 290.8 206 67.5
Potri.002G037900 Populus trichocarpa HOM05D003989 ORTHO05D004626 1.1e-76 290.4 206 66.0
DCAR_012550 Daucus carota HOM05D003989 ORTHO05D004626 1.8e-76 289.7 206 65.0
Prupe.8G222700 Prunus persica HOM05D003989 ORTHO05D004626 1.8e-76 289.7 206 67.0
Lj1A67G39 Lonicera japonica HOM05D003989 ORTHO05D004626 3.1e-76 288.9 206 66.5
Manes.12G032900 Manihot esculenta HOM05D003989 ORTHO05D004626 4.1e-76 288.5 206 66.0
Glyma.13G123800 Glycine max HOM05D003989 ORTHO05D004626 6.9e-76 287.7 206 68.0
Sed0015900 Sechium edule HOM05D003989 ORTHO05D004626 1.2e-75 287.0 206 63.1
Sc05g0000580 Simmondsia chinensis HOM05D003989 ORTHO05D004626 1.2e-75 287.0 206 64.6
Thecc.01G257400 Theobroma cacao HOM05D003989 ORTHO05D004626 1.2e-75 287.0 206 66.0
Hma1.2p1_0576F.1_g182030 Hydrangea macrophylla HOM05D003989 ORTHO05D004626 1.5e-75 286.6 206 66.5
CAN.G1147.6 Capsicum annuum HOM05D003989 ORTHO05D004626 2.0e-75 286.2 214 65.4
PGSC0003DMG400010319 Solanum tuberosum HOM05D003989 ORTHO05D004626 2.6e-75 285.8 207 67.6
Cpa.g.sc50.14 Carica papaya HOM05D003989 ORTHO05D004626 5.9e-75 284.6 206 65.5
Gohir.D07G155200 Gossypium hirsutum HOM05D003989 ORTHO05D004626 7.6e-75 284.3 206 65.5
Duzib211G0528 Durio zibethinus HOM05D003989 ORTHO05D004626 1.3e-74 283.5 206 66.5
FAN15G1221 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.3e-74 283.5 212 64.6
Hund09614 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.3e-74 283.5 205 65.4
FAN27G0191 Fragaria x ananassa HOM05D003989 ORTHO05D004626 2.9e-74 282.3 212 64.2
MELO3C012749.2 Cucumis melo HOM05D003989 ORTHO05D004626 5.0e-74 281.6 212 62.3
CDE04G0538 Ceratophyllum demersum HOM05D001473 ORTHO05D003900 6.5e-74 281.2 206 63.6
PSO210G1270 Papaver somniferum HOM05D003989 ORTHO05D004626 6.5e-74 281.2 206 64.6
PSO832G2594 Papaver somniferum HOM05D003989 ORTHO05D004626 6.5e-74 281.2 206 64.6
Aqoxy5G00222 Aquilegia oxysepala HOM05D003989 ORTHO05D004626 1.1e-73 280.4 207 66.2
CsaV3_7G027030 Cucumis sativus L. HOM05D003989 ORTHO05D004626 1.1e-73 280.4 206 62.1
FAN20G0664 Fragaria x ananassa HOM05D003989 ORTHO05D004626 1.1e-73 280.4 212 64.2
TWI12G0613 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 1.1e-73 280.4 204 63.7
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 2.5e-73 279.3 178 71.3
Gohir.A07G148900 Gossypium hirsutum HOM05D003989 ORTHO05D004626 3.2e-73 278.9 209 65.1
Gorai.001G177700 Gossypium raimondii HOM05D003989 ORTHO05D004626 3.2e-73 278.9 209 64.6
Migut.D00429 Erythranthe guttata HOM05D003989 ORTHO05D004626 7.2e-73 277.7 205 63.4
FAN24G0489 Fragaria x ananassa HOM05D003989 ORTHO05D004626 7.2e-73 277.7 217 63.1
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.2e-72 276.9 205 63.9
Cfa002434 Carpinus fangiana HOM05D003989 ORTHO05D004626 1.6e-72 276.6 207 63.8
Sabra02G0030600 Salix brachista HOM05D003989 ORTHO05D004626 1.6e-72 276.6 229 58.5
AUR62024686 Chenopodium quinoa HOM05D003989 ORTHO05D004626 2.1e-72 276.2 183 68.9
CANSAT01G0960 Cannabis sativa HOM05D003989 ORTHO05D004626 2.7e-72 275.8 206 61.7
vmacro14818 Vaccinium macrocarpon HOM05D003989 ORTHO05D004626 3.6e-72 275.4 188 68.6
CiPaw.03G265100 Carya illinoinensis HOM05D003989 ORTHO05D004626 7.9e-72 274.2 211 62.6
Rhsim13G0035500 Rhododendron simsii HOM05D003989 ORTHO05D004626 1.3e-71 273.5 183 71.0
Haze_24640 Corylus avellana HOM05D003989 ORTHO05D004626 3.9e-71 271.9 231 57.6
Eucgr.K03258 Eucalyptus grandis HOM05D003989 ORTHO05D004626 8.7e-71 270.8 206 61.7
Gorai.001G254000 Gossypium raimondii HOM05D003989 ORTHO05D004626 1.9e-70 269.6 206 61.7
ATR0736G179 Amborella trichopoda HOM05D003989 ORTHO05D004626 2.5e-70 269.2 207 62.3
CSS0015513 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 2.5e-70 269.2 206 64.6
Cc01_g18270 Coffea canephora HOM05D003989 ORTHO05D004626 3.3e-70 268.9 206 64.1
Peaxi162Scf01280g00015 Petunia axillaris HOM05D003989 ORTHO05D004626 3.3e-70 268.9 182 70.3
TWI75G1341 Tripterygium wilfordii HOM05D003989 ORTHO05D004626 4.3e-70 268.5 206 61.2
CSS0015006 Camellia sinensis var. sinensis HOM05D003989 ORTHO05D004626 9.7e-70 267.3 206 62.1
DCAR_018490 Daucus carota HOM05D003989 ORTHO05D004626 1.6e-69 266.5 204 60.3
GSVIVG01028345001 Vitis vinifera HOM05D003989 ORTHO05D004626 2.2e-69 266.2 245 53.9
MBI10_g23171_MAGBIO Magnolia biondii HOM05D003989 ORTHO05D004626 3.7e-69 265.4 207 61.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.1e-68 263.8 204 61.3
COL.COLO4_03876 Corchorus olitorius HOM05D003989 ORTHO05D004626 2.0e-67 259.6 206 58.7
THA.LOC104815848 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 2.6e-67 259.2 206 60.2
Thhalv10008791m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.0e-66 257.3 206 58.7
Thhalv10017243m.g Eutrema salsugineum HOM05D003989 ORTHO05D004626 1.0e-66 257.3 205 58.5
AT2G31140 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 1.3e-66 256.9 206 59.2
SGA_v2.0_scaffold2G00880 Striga asiatica HOM05D003989 ORTHO05D004626 1.3e-66 256.9 204 61.8
TAR633G0447 Trochodendron aralioides HOM05D003989 ORTHO05D004626 1.3e-66 256.9 183 66.7
Migut.N02208 Erythranthe guttata HOM05D003989 ORTHO05D004626 1.7e-66 256.5 206 60.7
BcaC01g05976 Brassica carinata HOM05D003989 ORTHO05D004626 2.2e-66 256.1 205 60.0
C03p20540 Brassica napus HOM05D003989 ORTHO05D004626 2.2e-66 256.1 205 60.0
BolC3t14434H Brassica oleracea HOM05D003989 ORTHO05D004626 2.2e-66 256.1 205 60.0
Os04g0102600 Oryza sativa ssp. japonica HOM05D003989 ORTHO05D004626 2.2e-66 256.1 207 60.4
AL4G26330 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 5.0e-66 255.0 206 59.2
TAR636G0965 Trochodendron aralioides HOM05D003989 ORTHO05D004626 5.0e-66 255.0 208 60.6
BraA10t42752Z Brassica rapa HOM05D003989 ORTHO05D004626 6.5e-66 254.6 200 59.0
BcaB01g04061 Brassica carinata HOM05D003989 ORTHO05D004626 8.5e-66 254.2 205 59.5
BcaB02g06815 Brassica carinata HOM05D003989 ORTHO05D004626 8.5e-66 254.2 200 60.0
BraA03t11012Z Brassica rapa HOM05D003989 ORTHO05D004626 8.5e-66 254.2 205 59.5
CARHR005730 Cardamine hirsuta HOM05D003989 ORTHO05D004626 1.4e-65 253.4 206 57.3
ClCG09G008040 Citrullus lanatus HOM05D003989 ORTHO05D004626 2.5e-65 252.7 255 51.4
AL1G16180 Arabidopsis lyrata HOM05D003989 ORTHO05D004626 3.2e-65 252.3 206 56.8
C05p04520 Brassica napus HOM05D003989 ORTHO05D004626 3.2e-65 252.3 200 58.5
Carub.0001s0556 Capsella rubella HOM05D003989 ORTHO05D004626 3.2e-65 252.3 207 57.5
AT1G06200 Arabidopsis thaliana HOM05D003989 ORTHO05D004626 5.5e-65 251.5 205 56.6
QL09p039095 Quercus lobata HOM05D003989 ORTHO05D004626 9.4e-65 250.8 304 45.4
Sp1g05010 Schrenkiella parvula HOM05D003989 ORTHO05D004626 9.4e-65 250.8 206 59.2
TAR362G1008 Trochodendron aralioides HOM05D003989 ORTHO05D004626 9.4e-65 250.8 183 65.0
Sp4g13620 Schrenkiella parvula HOM05D003989 ORTHO05D004626 1.2e-64 250.4 205 57.6
THA.LOC104800868 Tarenaya hassleriana HOM05D003989 ORTHO05D004626 2.1e-64 249.6 209 58.4
Lj2A1151T33 Lonicera japonica HOM05D003989 ORTHO05D004626 2.7e-64 249.2 183 66.1
Carub.0004s1243 Capsella rubella HOM05D003989 ORTHO05D004626 4.6e-64 248.4 206 57.8
BraA08t35517Z Brassica rapa HOM05D003989 ORTHO05D004626 1.0e-63 247.3 200 60.0
BolC5t29223H Brassica oleracea HOM05D003989 ORTHO05D004626 2.3e-63 246.1 213 55.4
CARHR124740 Cardamine hirsuta HOM05D003989 ORTHO05D004626 2.3e-63 246.1 206 57.8
HPP92_008957 Vanilla planifolia HOM05D003989 ORTHO05D004626 1.1e-62 243.8 206 55.8
CDE04G0232 Ceratophyllum demersum HOM05D003989 ORTHO05D004626 2.6e-62 242.7 206 56.8
MSTRG.17493 Avicennia marina HOM05D003989 ORTHO05D004626 3.3e-62 242.3 204 60.3
BcaB03g13432 Brassica carinata HOM05D003989 ORTHO05D004626 4.4e-62 241.9 207 58.5
Ciclev10022360m.g Citrus clementina HOM05D003989 ORTHO05D004626 4.4e-62 241.9 184 60.3
C08p02410 Brassica napus HOM05D003989 ORTHO05D004626 6.3e-61 238.0 208 56.7
MSTRG.18323 Avicennia marina HOM05D003989 ORTHO05D004626 8.2e-61 237.7 206 59.2
ATR0736G119 Amborella trichopoda HOM05D003989 ORTHO05D004626 1.4e-60 236.9 200 57.5
A08p36100 Brassica napus HOM05D003989 ORTHO05D004626 3.1e-60 235.7 208 56.7
Zm00001eb089650 Zea mays HOM05D003989 ORTHO05D004626 3.1e-60 235.7 207 56.0
CiPaw.04G187100 Carya illinoinensis HOM05D003989 ORTHO05D004626 4.5e-59 231.9 203 55.2
BcaC05g24296 Brassica carinata HOM05D003989 ORTHO05D004626 1.0e-58 230.7 182 58.8
AUR62011843 Chenopodium quinoa HOM05D003989 ORTHO05D004626 2.9e-58 229.2 209 55.5
Gohir.D07G219600 Gossypium hirsutum HOM05D003989 ORTHO05D004626 1.4e-57 226.9 206 55.3
Gohir.A07G213400 Gossypium hirsutum HOM05D003989 ORTHO05D004626 4.2e-57 225.3 206 54.9
Lsat_1_v5_gn_8_92701 Lactuca sativa HOM05D003989 ORTHO05D004626 7.2e-57 224.6 147 74.1
unitig_60.g25751 Utricularia gibba HOM05D003989 ORTHO05D004626 6.1e-56 221.5 206 54.4
SalBow6G3340 Salvia bowleyana HOM05D003989 ORTHO05D004626 1.1e-54 217.2 202 55.4
Aa31LG5G5780 Aethionema arabicum HOM05D003989 ORTHO05D004626 1.7e-53 213.4 184 55.4
SMO238G0041 Selaginella moellendorffii HOM05D003989 ORTHO05D004626 1.7e-53 213.4 195 50.8
Zm00001eb418960 Zea mays HOM05D003989 ORTHO05D004626 2.2e-53 213.0 232 50.0
unitig_22.g5457 Utricularia gibba HOM05D003989 ORTHO05D004626 1.4e-52 210.3 206 52.9
Pp3c12_14220 Physcomitrium patens HOM05D003989 ORTHO05D004626 2.0e-51 206.5 201 50.7
Pp3c3_23160 Physcomitrium patens HOM05D003989 ORTHO05D004626 3.8e-50 202.2 199 49.2
COL.COLO4_04036 Corchorus olitorius HOM05D003989 ORTHO05D004626 2.5e-49 199.5 183 53.6
Nitab4.5_0005001g0020 Nicotiana tabacum HOM05D003989 ORTHO05D004626 8.0e-48 194.5 136 65.4
Medtr1g069890 Medicago truncatula HOM05D003989 ORTHO05D004626 1.4e-47 193.7 119 83.2
EL10Ac3g04998 Beta vulgaris HOM05D003989 ORTHO05D004626 2.3e-47 193.0 204 48.5
CBR_g23031 Chara braunii HOM05D003989 ORTHO05D004626 5.7e-46 188.3 204 44.1
Mapoly0108s0055 Marchantia polymorpha HOM05D003989 ORTHO05D004626 1.7e-45 186.8 195 48.2
PGR044G1132 Punica granatum HOM05D003989 ORTHO05D004626 1.4e-44 183.7 146 56.8
Actinidia30162 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.8e-44 183.3 143 58.0
Oeu025856.1 Olea europaea HOM05D003989 ORTHO05D004626 2.9e-42 176.0 126 71.4
Hund03044 Selenicereus undatus HOM05D003989 ORTHO05D004626 6.5e-42 174.9 194 47.4
Actinidia09544 Actinidia chinensis HOM05D003989 ORTHO05D004626 1.5e-41 173.7 122 71.3
AUR62002143 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.5e-41 173.7 196 48.0
SEGI_09904 Sequoiadendron giganteum HOM05D003989 ORTHO05D004626 5.5e-41 171.8 146 52.7
AUR62015563 Chenopodium quinoa HOM05D003989 ORTHO05D004626 7.2e-41 171.4 182 49.5
Ah.13g072470 Amaranthus hybridus HOM05D003989 ORTHO05D004626 6.1e-40 168.3 163 54.6
AUR62015565 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.3e-37 160.6 196 43.4
EL10Ac3g05001 Beta vulgaris HOM05D003989 ORTHO05D004626 7.7e-35 151.4 191 42.4
Hund03045 Selenicereus undatus HOM05D003989 ORTHO05D004626 1.7e-34 150.2 199 41.2
Carub.0007s3141 Capsella rubella HOM05D003989 ORTHO05D004626 2.9e-34 149.4 119 62.2
AagrBONN_evm.TU.Sc2ySwM_228.3815 Anthoceros agrestis HOM05D003989 ORTHO05D004626 1.2e-30 137.5 152 45.4
MCO11G084 Micromonas commoda HOM05D003989 ORTHO05D004626 2.0e-22 110.2 181 38.7
BcaB06g28424 Brassica carinata HOM05D003989 ORTHO05D004626 8.3e-21 104.8 146 40.4
Medtr1g069860 Medicago truncatula HOM05D003989 ORTHO05D004626 2.4e-20 103.2 84 63.1
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 3.2e-20 102.8 105 44.8
Cre16.g694703 Chlamydomonas reinhardtii HOM05D003989 ORTHO05D004626 7.8e-19 98.2 164 34.8
A04p23940 Brassica napus HOM05D003989 ORTHO05D004626 1.7e-18 97.1 94 58.5
BraA04t17918Z Brassica rapa HOM05D003989 ORTHO05D004626 1.7e-18 97.1 94 58.5
AUR62015564 Chenopodium quinoa HOM05D003989 ORTHO05D004626 1.6e-16 90.5 169 35.5
C04p60570 Brassica napus HOM05D003989 ORTHO05D004626 2.0e-14 83.6 66 66.7
BcaB06g28507 Brassica carinata HOM05D003989 ORTHO05D004626 1.7e-13 80.5 92 46.7
BcaC02g11217 Brassica carinata HOM05D003989 ORTHO05D004626 1.2e-08 64.3 46 60.9
BcaC02g11218 Brassica carinata HOM05D003989 ORTHO05D004626 1.2e-08 64.3 46 60.9
BolC4t23443H Brassica oleracea HOM05D003989 ORTHO05D004626 1.2e-08 64.3 46 60.9
C04p19080 Brassica napus HOM05D003989 ORTHO05D004626 2.1e-08 63.5 46 60.9
SMO117G0314 Selaginella moellendorffii HOM05D001774 ORTHO05D001663 6.2e-08 62.0 128 34.4
MD05G1287400 Malus domestica HOM05D001774 ORTHO05D001663 5.2e-07 58.9 129 31.8
Hund21516 Selenicereus undatus HOM05D001774 ORTHO05D001663 5.2e-07 58.9 133 29.3
RcHm_v2.0_Chr5g0013501 Rosa chinensis HOM05D001774 ORTHO05D001663 8.9e-07 58.2 128 31.2
Thecc.06G153800 Theobroma cacao HOM05D001774 ORTHO05D001663 8.9e-07 58.2 156 28.8
Lalb_Chr01g0007351 Lupinus albus HOM05D001774 ORTHO05D001663 2.6e-06 56.6 123 30.9
FvH4_3g05970 Fragaria vesca HOM05D001774 ORTHO05D001663 9.9e-06 54.7 128 29.7
Glyma.07G148800 Glycine max HOM05D001774 ORTHO05D001663 9.9e-06 54.7 94 33.0


User provided reference genes

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