Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 8.5e-102 373.6 183 100.0
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 2.8e-97 358.6 183 94.5
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 1.6e-95 352.8 183 92.9
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 3.5e-95 351.7 183 94.5
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 1.9e-93 345.9 183 92.3
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 3.2e-93 345.1 183 91.8
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 5.5e-93 344.4 183 89.6
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 9.4e-93 343.6 183 90.7
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 1.2e-92 343.2 183 91.3
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 1.2e-92 343.2 183 89.1
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 4.7e-92 341.3 183 88.0
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 8.0e-92 340.5 183 88.5
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 1.5e-90 336.3 183 87.4
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 1.5e-90 336.3 183 87.4
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 1.5e-90 336.3 183 86.9
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 2.6e-90 335.5 183 86.9
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 4.4e-90 334.7 183 86.9
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 7.5e-90 334.0 183 87.4
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 9.8e-90 333.6 183 86.9
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 1.3e-89 333.2 183 86.3
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 1.3e-89 333.2 183 85.8
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 2.8e-89 332.0 183 86.9
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 8.3e-89 330.5 183 85.2
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 8.3e-89 330.5 183 85.8
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 1.1e-88 330.1 183 85.8
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.8e-88 329.3 183 85.2
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.8e-88 329.3 183 85.8
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 1.8e-88 329.3 183 86.3
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 3.1e-88 328.6 183 85.2
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 3.1e-88 328.6 183 84.7
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 3.1e-88 328.6 183 85.8
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 3.1e-88 328.6 183 83.6
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 3.1e-88 328.6 183 83.6
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 4.1e-88 328.2 183 84.7
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 4.1e-88 328.2 183 85.2
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 7.0e-88 327.4 183 85.2
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 9.1e-88 327.0 183 84.2
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 1.2e-87 326.6 183 85.8
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.6e-87 326.2 183 85.8
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.6e-87 326.2 183 85.8
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.6e-87 326.2 183 85.8
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.0e-87 325.9 183 84.7
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 2.0e-87 325.9 183 84.7
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 2.7e-87 325.5 183 84.2
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 2.7e-87 325.5 183 84.2
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 2.7e-87 325.5 183 83.1
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 3.5e-87 325.1 183 84.2
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 3.5e-87 325.1 183 82.0
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 3.5e-87 325.1 183 83.1
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 3.5e-87 325.1 183 83.6
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 3.5e-87 325.1 183 84.7
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 4.5e-87 324.7 183 85.2
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 4.5e-87 324.7 183 85.2
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 4.5e-87 324.7 183 83.6
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 4.5e-87 324.7 183 84.7
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 5.9e-87 324.3 183 83.6
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 5.9e-87 324.3 183 83.6
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 5.9e-87 324.3 183 84.7
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 7.7e-87 323.9 183 84.2
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 7.7e-87 323.9 183 83.6
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 7.7e-87 323.9 183 84.7
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 83.6
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 84.7
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 83.6
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 84.7
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 84.7
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 84.2
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 82.0
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 1.0e-86 323.6 183 83.6
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.3e-86 323.2 183 83.6
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 1.3e-86 323.2 183 84.7
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 1.7e-86 322.8 183 83.6
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 1.7e-86 322.8 183 81.4
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 2.3e-86 322.4 183 82.5
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 2.3e-86 322.4 183 83.1
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 2.3e-86 322.4 183 83.1
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 2.3e-86 322.4 183 83.1
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 2.3e-86 322.4 183 83.1
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 2.9e-86 322.0 183 82.5
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 2.9e-86 322.0 183 82.5
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 5.0e-86 321.2 183 83.1
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 5.0e-86 321.2 183 83.6
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 6.5e-86 320.9 183 82.0
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 8.6e-86 320.5 183 84.7
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 1.1e-85 320.1 183 82.5
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 1.9e-85 319.3 183 81.4
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 3.3e-85 318.5 183 80.3
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 4.2e-85 318.2 183 81.4
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 7.2e-85 317.4 183 82.0
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 7.2e-85 317.4 183 83.1
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 1.6e-84 316.2 183 83.1
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 1.6e-84 316.2 183 80.3
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 2.1e-84 315.8 183 79.8
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 2.8e-84 315.5 183 80.9
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 3.6e-84 315.1 183 82.0
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 3.6e-84 315.1 183 81.4
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 4.7e-84 314.7 185 79.5
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 4.7e-84 314.7 183 79.8
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 6.1e-84 314.3 183 82.0
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 1.0e-83 313.5 183 81.4
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 5.2e-83 311.2 183 79.8
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 8.9e-83 310.5 183 78.1
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 5.7e-82 307.8 183 79.8
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 7.5e-82 307.4 183 78.7
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 2.2e-81 305.8 183 78.1
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 2.8e-81 305.4 183 76.5
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.1e-80 303.5 183 79.8
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.4e-80 302.4 183 79.2
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 5.4e-80 301.2 183 77.6
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 7.8e-79 297.4 183 75.4
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 7.8e-79 297.4 241 63.5
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 2.5e-77 292.4 183 78.7
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 4.3e-77 291.6 183 74.9
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 4.3e-77 291.6 183 74.9
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 4.3e-77 291.6 183 74.9
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 6.1e-76 287.7 183 73.8
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 5.2e-75 284.6 183 73.2
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 1.5e-74 283.1 183 69.4
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 7.0e-72 274.2 183 70.5
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.1e-67 260.4 183 72.1
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 4.6e-63 245.0 183 64.5
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 9.5e-53 210.7 185 56.2
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.1e-51 207.2 183 53.0
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 1.8e-51 206.5 185 55.7
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 1.1e-48 197.2 167 56.9
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 2.1e-47 193.0 167 56.3
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 2.7e-47 192.6 167 56.9
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 4.6e-47 191.8 122 73.0
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 7.1e-40 167.9 99 83.8
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 6.6e-38 161.4 134 59.0
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 8.7e-38 161.0 158 53.2
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.1e-36 156.4 99 75.8
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 1.5e-34 150.2 187 42.8
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 4.5e-34 148.7 99 71.7
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 4.5e-34 148.7 99 71.7
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.0e-30 137.5 75 78.7
unitig_578.g16648 Utricularia gibba HOM05D003479 ORTHO05D004659 5.6e-29 131.7 75 77.3
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 3.4e-26 122.5 106 59.4
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 1.1e-24 117.5 81 69.1
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 1.1e-24 117.5 81 69.1
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.6e-23 113.6 168 38.1
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.6e-21 105.1 96 55.2
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 5.6e-21 105.1 99 51.5
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 9.6e-21 104.4 194 35.6
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 7.6e-18 94.7 84 57.1
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 4.9e-17 92.0 77 59.7
BcaC09g50075 Brassica carinata HOM05D003479 ORTHO05D004659 2.5e-16 89.7 104 43.3
CAN.G179.24 Capsicum annuum HOM05D003479 ORTHO05D004659 1.2e-15 87.4 87 46.0
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 4.6e-15 85.5 178 32.6
Gohir.A11G116300 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.3e-14 83.2 123 35.8
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 3.0e-14 82.8 107 42.1
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 3.0e-14 82.8 107 42.1
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 3.0e-14 82.8 107 42.1
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 1.1e-13 80.9 45 77.8
BolC8t51271H Brassica oleracea HOM05D003479 ORTHO05D040158 9.0e-11 71.2 44 68.2
Lsat_1_v5_gn_8_60120 Lactuca sativa HOM05D003479 ORTHO05D016156 5.9e-10 68.6 94 40.4
HPP92_010571 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.8e-09 65.9 106 39.6
C08p36950 Brassica napus HOM05D003479 ORTHO05D040158 5.0e-09 65.5 45 66.7
Lju2566C0G3 Lonicera japonica HOM05D001538 ORTHO05D011045 1.1e-08 64.3 60 50.0
MBI11_g09044_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.9e-08 63.5 89 34.8
MBI11_g41071_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 9.4e-08 61.2 85 37.6
MBI11_g09870_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.2e-07 60.8 85 38.8
MBI11_g41070_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.7e-07 59.7 74 41.9
MBI11_g43863_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 4.6e-07 58.9 78 39.7
MBI11_g39904_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 1.4e-06 57.4 74 40.5


User provided reference genes

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