Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 3.2e-139 498.4 256 100.0
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 5.4e-94 348.2 253 73.9
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 5.2e-89 331.6 251 71.7
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 6.3e-87 324.7 256 71.5
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 1.7e-71 273.5 268 59.3
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 7.1e-46 188.3 275 45.8
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.2e-42 175.3 271 46.1
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 1.4e-41 174.1 277 43.7
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 3.1e-41 172.9 274 46.4
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 4.5e-40 169.1 275 42.9
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.2e-39 166.8 268 45.1
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 4.9e-39 165.6 262 43.5
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 4.3e-35 152.5 277 41.2
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 8.1e-34 148.3 277 40.8
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 8.2e-26 121.7 255 38.8
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.5e-16 90.9 271 34.3
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 3.2e-14 83.2 162 36.4
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 4.2e-14 82.8 283 31.8
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 4.2e-14 82.8 259 29.0
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 7.2e-14 82.0 282 30.9
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 9.4e-14 81.6 264 31.1
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.1e-13 80.5 275 29.8
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 4.6e-13 79.3 262 31.7
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 6.1e-13 79.0 277 27.8
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.0e-12 76.6 268 31.3
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.7e-12 75.5 272 29.8
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 6.7e-12 75.5 283 29.0
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 8.8e-12 75.1 269 32.0
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.5e-11 74.3 272 33.5
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 3.3e-11 73.2 267 31.5
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 4.3e-11 72.8 258 30.2
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 5.7e-11 72.4 259 30.1
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.3e-10 71.2 277 29.6
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 2.2e-10 70.5 279 31.2
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 3.7e-10 69.7 273 29.3
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.7e-10 69.7 272 31.2
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.8e-10 69.3 274 28.5
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 4.8e-10 69.3 279 30.5
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 6.3e-10 68.9 286 28.0
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.1e-09 68.2 282 24.8
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.4e-09 67.8 278 27.3
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.4e-09 67.8 284 28.9
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 2.4e-09 67.0 273 31.9
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 2.4e-09 67.0 262 27.9
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 3.1e-09 66.6 262 26.7
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 4.1e-09 66.2 262 27.9
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 5.3e-09 65.9 295 29.2
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 5.3e-09 65.9 288 31.9
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 6.9e-09 65.5 84 41.7
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.2e-08 64.7 289 29.1
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.5e-08 64.3 284 26.8
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 2.0e-08 63.9 260 29.6
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 2.6e-08 63.5 35 80.0
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.4e-08 63.2 272 26.5
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 3.4e-08 63.2 281 28.1
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 4.5e-08 62.8 280 25.7
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 5.9e-08 62.4 90 35.6
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 5.9e-08 62.4 35 77.1
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 7.7e-08 62.0 275 28.7
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.0e-07 61.6 275 27.3
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 1.3e-07 61.2 150 31.3
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 1.7e-07 60.8 264 28.4
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.9e-07 60.1 253 26.9
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.9e-07 60.1 253 26.9
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 5.0e-07 59.3 207 26.1
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 5.0e-07 59.3 263 28.9
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 6.5e-07 58.9 130 32.3
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 6.5e-07 58.9 130 34.6
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 6.5e-07 58.9 272 29.0
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 8.5e-07 58.5 284 24.6
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.1e-06 58.2 48 54.2
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.1e-06 58.2 261 29.1
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.1e-06 58.2 278 25.2
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.1e-06 58.2 256 28.5
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.4e-06 57.8 138 36.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.4e-06 57.8 259 26.3
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.4e-06 57.8 268 27.2
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 1.9e-06 57.4 262 28.2
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.5e-06 57.0 272 24.3
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 3.2e-06 56.6 268 26.9
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 5.5e-06 55.8 270 27.8
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 5.5e-06 55.8 276 30.1
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.5e-06 55.8 259 27.8
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.5e-06 55.8 259 27.8
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 5.5e-06 55.8 263 28.9
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 5.5e-06 55.8 187 27.8
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 7.2e-06 55.5 254 29.1
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 9.4e-06 55.1 285 26.7


User provided reference genes

Program Settings