Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 9.9e-277 956.1 453 100.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 3.9e-265 917.5 453 95.4
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.2e-260 901.7 453 92.7
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.1e-250 868.6 451 88.9
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 1.5e-248 862.4 453 89.0
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.3e-248 861.3 450 88.0
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 5.3e-246 854.0 453 87.0
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.0e-245 852.0 451 87.4
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 7.7e-245 850.1 453 87.6
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.3e-244 849.4 452 86.5
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.9e-244 848.2 451 87.1
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 3.8e-244 847.8 453 85.7
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 6.5e-244 847.0 450 86.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.1e-243 846.3 453 86.3
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.9e-243 845.5 451 86.5
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.9e-243 845.5 453 85.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 3.2e-243 844.7 453 86.1
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 5.5e-243 844.0 448 85.9
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 5.5e-243 844.0 448 88.4
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.2e-242 842.8 450 86.2
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 2.1e-242 842.0 447 87.5
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.6e-242 841.3 453 85.2
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 7.9e-242 840.1 453 84.5
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.8e-241 839.0 444 88.7
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.3e-241 838.6 453 85.4
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 3.9e-241 837.8 453 85.7
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 5.2e-241 837.4 450 85.1
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 6.7e-241 837.0 447 85.5
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 1.5e-240 835.9 453 85.4
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 1.5e-240 835.9 453 85.4
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.5e-240 835.9 451 86.7
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.6e-240 835.1 446 85.7
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.6e-240 835.1 451 85.4
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.4e-240 834.3 451 85.8
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 5.7e-240 833.9 451 85.1
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 5.7e-240 833.9 451 85.6
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.7e-240 833.2 451 85.4
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.3e-239 832.8 453 85.4
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.8e-239 830.9 453 85.0
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-238 829.7 448 85.0
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.1e-238 829.7 528 75.0
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.4e-238 829.3 452 84.3
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.4e-238 828.6 451 85.8
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 9.1e-238 826.6 453 84.1
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.2e-237 826.2 450 84.0
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.2e-237 826.2 453 84.3
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 5.9e-237 823.9 447 84.1
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 7.7e-237 823.5 449 83.7
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.3e-236 822.8 453 83.7
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.3e-236 822.8 453 83.2
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 1.3e-236 822.8 449 84.9
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.2e-236 822.0 463 83.2
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 5.0e-236 820.8 448 84.8
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 5.0e-236 820.8 453 83.4
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 6.5e-236 820.5 449 84.0
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 8.5e-236 820.1 448 85.7
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.9e-235 818.9 472 80.9
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.2e-235 817.8 450 83.6
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 7.2e-235 817.0 451 83.8
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.2e-234 816.2 451 84.0
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.1e-234 815.5 448 84.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 3.6e-234 814.7 452 83.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.1e-234 813.9 449 83.5
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.0e-233 813.1 450 83.6
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 2.3e-233 812.0 452 83.8
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.0e-233 811.6 452 82.5
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 6.7e-233 810.4 453 82.8
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.2e-232 809.7 453 83.4
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.5e-232 809.3 453 82.8
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 4.4e-232 807.7 440 84.3
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 7.5e-232 807.0 484 78.1
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.7e-231 805.8 453 82.6
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.7e-231 805.8 453 82.8
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.8e-231 805.1 453 82.8
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 4.8e-231 804.3 452 82.1
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.8e-231 804.3 454 82.8
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 6.3e-231 803.9 452 82.3
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.1e-230 803.1 452 81.9
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.8e-230 802.4 453 81.9
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.8e-230 802.4 453 81.9
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.4e-230 802.0 453 81.7
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 5.3e-230 800.8 450 82.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 9.1e-230 800.0 453 81.9
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.6e-229 799.3 451 82.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.6e-229 799.3 453 81.0
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.6e-229 799.3 453 81.7
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.0e-229 798.9 453 81.7
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.7e-229 798.5 452 81.0
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.5e-229 797.7 453 81.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.3e-228 796.2 453 81.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.7e-228 795.8 453 81.2
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.7e-228 795.8 453 81.2
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.2e-228 795.4 453 81.5
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 5.0e-228 794.3 453 81.5
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.5e-228 793.9 506 74.9
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 8.5e-228 793.5 499 76.0
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.1e-227 793.1 449 81.1
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.5e-227 792.7 453 81.0
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 8.0e-226 786.9 451 80.5
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.3e-223 779.6 451 78.5
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.8e-223 778.5 445 79.1
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 2.7e-221 771.9 380 95.5
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.5e-221 771.2 447 80.8
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 1.2e-218 763.1 452 79.4
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 4.7e-218 761.1 444 79.5
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 2.8e-215 751.9 443 79.7
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 6.3e-215 750.7 412 84.2
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.8e-214 749.2 452 77.7
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.9e-211 739.2 453 77.5
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.6e-211 737.6 443 78.3
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.1e-203 713.4 446 74.4
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.5e-203 710.3 464 74.1
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 2.3e-201 705.7 440 75.7
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 5.2e-201 704.5 457 73.7
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.2e-200 703.4 445 73.0
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 7.3e-195 684.1 377 83.3
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.3e-193 679.1 388 80.4
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.3e-188 662.5 448 70.8
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 3.0e-180 635.6 334 88.9
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.9e-172 608.6 452 67.3
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.8e-162 575.9 432 66.7
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 5.8e-160 568.2 298 88.3
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 5.5e-158 561.6 295 89.2
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.3e-153 545.0 467 61.9
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 7.6e-152 541.2 316 76.3
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 3.9e-140 502.3 451 58.3
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 3.4e-136 489.2 288 77.8
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.4e-121 439.9 379 57.8
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.5e-118 430.6 295 67.8
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.0e-103 381.3 280 66.4
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 6.6e-95 352.1 199 77.9
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 6.0e-80 302.4 162 85.8
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.0e-68 263.1 148 77.7
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 8.9e-68 261.9 198 66.2
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 1.7e-66 257.7 140 85.0
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.8e-66 256.5 270 48.9
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 8.4e-66 255.4 150 76.0
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.2e-65 253.4 147 78.9
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.1e-64 250.8 153 73.2
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.9e-62 244.2 146 71.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.6e-61 240.0 186 62.4
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 7.3e-54 215.7 111 93.7
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 9.0e-52 208.8 135 74.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 6.0e-48 196.1 138 66.7
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 2.7e-40 170.6 117 65.8
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 1.1e-38 165.2 133 60.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 1.1e-28 132.1 80 77.5
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.8e-28 131.3 73 78.1
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.5e-27 126.7 78 73.1
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.5e-27 126.7 74 74.3
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.1e-24 116.3 55 94.5
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 6.1e-24 116.3 72 70.8
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.4e-23 115.2 69 71.0
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 1.4e-23 115.2 66 77.3
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 5.7e-22 109.8 80 60.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 3.2e-17 94.0 55 72.7
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 5.1e-15 86.7 72 55.6
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.0e-14 84.7 67 56.7
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.3e-14 84.0 48 75.0
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 4.4e-14 83.6 44 79.5
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 3.2e-09 67.4 162 29.6
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.2e-08 65.5 36 80.6


User provided reference genes

Program Settings