Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 2.7e-121 438.7 228 100.0
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 3.3e-87 325.5 204 86.8
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 1.8e-85 319.7 201 86.1
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 5.0e-75 285.0 222 73.0
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.9e-72 275.4 215 72.1
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 3.3e-71 272.3 223 70.9
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 8.2e-70 267.7 215 70.7
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 6.9e-69 264.6 202 78.2
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 1.8e-56 223.4 215 59.5
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 3.9e-56 222.2 218 60.6
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.1e-53 212.6 214 59.3
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 5.9e-52 208.4 220 58.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 5.9e-52 208.4 196 61.7
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.9e-51 206.1 215 59.1
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 3.0e-48 196.1 218 56.9
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 3.4e-47 192.6 220 53.2
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.3e-46 190.7 216 54.2
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 2.4e-45 186.4 219 53.9
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 5.4e-45 185.3 218 51.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 7.0e-45 184.9 220 52.3
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 1.0e-43 181.0 223 55.2
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.2e-43 179.9 218 53.2
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 1.9e-42 176.8 224 53.6
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 9.4e-42 174.5 157 65.0
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 6.1e-41 171.8 212 51.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 8.0e-41 171.4 206 56.3
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 1.4e-40 170.6 172 61.0
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 5.2e-40 168.7 223 52.0
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.8e-40 168.3 200 52.0
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.2e-39 167.5 199 51.8
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.2e-39 167.5 218 52.3
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 4.4e-39 165.6 203 53.7
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 5.7e-39 165.2 218 49.5
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.3e-38 164.1 203 53.7
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.8e-37 160.2 202 52.0
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 3.1e-37 159.5 222 46.8
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 4.5e-36 155.6 221 48.4
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.9e-36 155.2 210 50.0
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 7.7e-36 154.8 222 50.0
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.7e-36 154.8 221 49.8
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.7e-35 153.7 235 47.7
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.3e-35 153.3 210 49.5
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.3e-35 153.3 221 48.4
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.3e-35 153.3 221 49.3
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.9e-35 152.9 199 48.7
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.9e-34 150.2 200 50.0
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 2.5e-34 149.8 203 51.7
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.5e-34 149.8 203 51.7
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.3e-34 149.4 202 51.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.3e-34 149.4 216 46.3
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.6e-33 147.1 217 44.7
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 8.0e-33 144.8 227 44.9
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.8e-32 143.7 208 47.1
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.8e-32 143.7 212 44.3
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.5e-31 138.3 206 47.1
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 2.0e-28 130.2 220 44.1
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 5.9e-28 128.6 245 44.1
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.8e-28 128.3 198 47.0
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.7e-27 127.1 207 45.9
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 3.9e-27 125.9 187 46.5
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.6e-27 125.2 202 45.5
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 8.6e-27 124.8 210 45.7
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 8.6e-27 124.8 203 43.8
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.5e-26 124.0 214 42.1
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.5e-26 124.0 216 43.5
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.9e-26 123.6 223 45.3
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-26 123.6 214 42.1
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.5e-26 123.2 223 46.6
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 3.3e-26 122.9 185 46.5
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.3e-26 122.9 223 46.2
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 3.3e-26 122.9 203 44.3
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.3e-26 122.5 222 41.4
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 4.3e-26 122.5 212 42.9
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 9.5e-26 121.3 199 44.2
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.1e-25 120.2 198 42.9
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 6.1e-25 118.6 245 41.6
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.0e-25 118.2 209 42.1
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 8.0e-25 118.2 222 44.1
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.0e-24 117.9 143 53.1
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.0e-24 117.9 202 44.1
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.4e-24 117.5 209 45.0
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.0e-24 115.9 203 42.9
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.2e-24 115.5 204 41.2
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 5.2e-24 115.5 131 51.9
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 5.2e-24 115.5 216 41.2
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 8.9e-24 114.8 220 42.3
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 8.9e-24 114.8 198 44.4
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.2e-23 114.4 220 43.2
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.2e-23 114.4 210 43.3
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 4.4e-23 112.5 222 42.8
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.4e-23 112.5 198 43.9
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 7.5e-23 111.7 200 41.5
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 9.8e-23 111.3 200 43.5
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 9.8e-23 111.3 200 43.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.3e-22 110.9 234 43.2
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 4.9e-22 109.0 209 43.1
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 6.4e-22 108.6 233 39.5
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.9e-21 107.1 231 38.1
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.4e-21 106.7 198 42.4
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.2e-20 104.4 197 39.6
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.2e-20 104.4 202 40.1
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.6e-20 104.0 204 39.2
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.6e-20 102.4 142 49.3
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 7.8e-20 101.7 225 39.6
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 7.8e-20 101.7 202 39.6
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.0e-19 101.3 207 40.6
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.7e-19 100.5 149 49.0
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.0e-19 99.0 220 39.5
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 5.0e-19 99.0 225 40.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 1.5e-18 97.4 220 37.3
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.5e-18 97.4 203 39.9
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-18 97.1 209 36.8
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.9e-18 97.1 209 36.8
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.9e-18 97.1 200 39.0
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.2e-17 94.4 197 35.0
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.6e-17 94.0 213 38.5
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.6e-17 94.0 120 48.3
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 2.1e-17 93.6 209 36.4
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.1e-17 93.6 133 48.1
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 3.6e-17 92.8 129 48.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 6.2e-17 92.0 180 39.4
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 6.2e-17 92.0 209 35.9
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 6.2e-17 92.0 180 39.4
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 6.2e-17 92.0 209 35.9
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 6.2e-17 92.0 144 47.2
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 8.1e-17 91.7 209 35.9
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.1e-16 91.3 198 37.9
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.1e-16 91.3 188 41.0
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 3.1e-16 89.7 209 35.4
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 6.8e-16 88.6 208 37.0
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 8.9e-16 88.2 120 46.7
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.5e-15 87.4 180 37.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.5e-15 87.4 180 37.8
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.5e-15 87.4 180 37.8
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.5e-15 87.4 216 38.0
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 2.0e-15 87.0 158 43.0
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 2.0e-15 87.0 120 46.7
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 4.4e-15 85.9 231 34.2
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 5.8e-15 85.5 235 32.3
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 5.8e-15 85.5 211 39.3
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 5.8e-15 85.5 157 41.4
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 7.5e-15 85.1 204 35.8
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 9.8e-15 84.7 157 40.8
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 9.8e-15 84.7 157 40.8
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-14 84.3 157 42.0
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.9e-14 83.2 203 34.5
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 4.9e-14 82.4 193 36.3
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 6.4e-14 82.0 176 39.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 7.1e-13 78.6 181 35.9
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 7.8e-12 75.1 220 32.3
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.8e-12 75.1 48 77.1
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.0e-11 73.2 148 41.2
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.1e-10 71.2 49 69.4
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.5e-10 70.9 240 31.7
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.9e-10 70.5 244 33.2
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 1.9e-10 70.5 187 36.4
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 1.9e-10 70.5 202 32.2
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.5e-10 70.1 124 40.3
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 5.6e-10 68.9 152 40.1
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 7.3e-10 68.6 56 60.7
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.2e-09 67.8 214 31.3
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 2.8e-09 66.6 52 61.5
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.6e-09 66.2 206 31.6
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 6.2e-09 65.5 112 40.2
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.4e-08 64.3 189 36.5
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 6.8e-08 62.0 46 63.0
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.4e-07 59.3 165 34.5
ATR0580G179 Amborella trichopoda HOM05D007665 ORTHO05D008293 1.7e-06 57.4 268 27.2
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.9e-06 56.6 146 39.7
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 3.7e-06 56.2 210 28.6
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.9e-06 55.8 210 28.1


User provided reference genes

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