Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 4.3e-68 261.2 128 100.0
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 6.0e-54 214.2 111 93.7
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 3.3e-52 208.4 111 91.9
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 4.3e-52 208.0 111 91.0
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.1e-51 205.7 111 87.4
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 2.1e-51 205.7 111 87.4
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 2.8e-51 205.3 111 88.3
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 6.2e-51 204.1 111 87.4
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.1e-50 203.4 111 86.5
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.4e-50 203.0 108 88.0
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.4e-50 202.2 111 85.6
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.1e-50 201.4 111 86.5
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 5.3e-50 201.1 111 88.3
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.9e-50 200.7 111 86.5
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.9e-50 200.7 111 86.5
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 6.9e-50 200.7 111 86.5
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 9.0e-50 200.3 108 86.1
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 1.2e-49 199.9 111 87.4
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.2e-49 199.9 111 85.6
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.5e-49 199.5 111 84.7
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.5e-49 199.5 110 85.5
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.5e-49 199.5 110 86.4
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.0e-49 199.1 109 89.0
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 2.6e-49 198.7 111 85.6
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.6e-49 198.7 111 85.6
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.6e-49 198.7 111 85.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.6e-49 198.7 111 85.6
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.4e-49 198.4 108 85.2
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 3.4e-49 198.4 111 85.6
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.4e-49 198.4 110 84.5
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 4.5e-49 198.0 111 82.0
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 4.5e-49 198.0 109 85.3
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 7.6e-49 197.2 111 84.7
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 7.6e-49 197.2 111 84.7
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 7.6e-49 197.2 111 84.7
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.6e-49 197.2 111 84.7
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 7.6e-49 197.2 111 86.5
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.0e-48 196.8 110 83.6
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 1.0e-48 196.8 111 83.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.0e-48 196.8 111 83.8
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.3e-48 196.4 112 86.6
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.7e-48 196.1 111 86.5
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.2e-48 195.7 111 85.6
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.9e-48 195.3 111 82.9
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 2.9e-48 195.3 110 83.6
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 2.9e-48 195.3 112 85.7
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.8e-48 194.9 111 83.8
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 6.5e-48 194.1 108 84.3
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 6.5e-48 194.1 111 82.9
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.5e-48 194.1 110 85.5
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 8.4e-48 193.7 111 83.8
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 8.4e-48 193.7 111 83.8
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 8.4e-48 193.7 111 82.0
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 8.4e-48 193.7 110 84.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 1.1e-47 193.4 111 83.8
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.1e-47 193.4 111 83.8
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.1e-47 193.4 107 86.0
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.4e-47 193.0 110 83.6
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 1.4e-47 193.0 111 83.8
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.9e-47 192.6 111 81.1
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.9e-47 192.6 111 82.0
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.9e-47 192.6 111 84.7
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.9e-47 192.6 111 82.0
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 2.5e-47 192.2 109 85.3
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 4.2e-47 191.4 111 82.0
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 4.2e-47 191.4 108 85.2
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 5.5e-47 191.0 111 81.1
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 5.5e-47 191.0 111 82.0
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.1e-47 190.7 111 82.0
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 9.3e-47 190.3 111 81.1
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 9.3e-47 190.3 109 84.4
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 9.3e-47 190.3 111 79.3
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.2e-46 189.9 111 81.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.2e-46 189.9 111 82.0
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.2e-46 189.9 108 84.3
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.6e-46 189.5 109 84.4
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.1e-46 189.1 111 82.0
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.1e-46 189.1 111 80.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.7e-46 188.7 111 81.1
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.7e-46 188.7 110 83.6
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 2.7e-46 188.7 111 80.2
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 3.5e-46 188.3 109 82.6
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 4.6e-46 188.0 108 84.3
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 4.6e-46 188.0 111 80.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 6.1e-46 187.6 111 81.1
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 6.1e-46 187.6 111 81.1
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.0e-45 186.8 111 82.0
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.0e-45 186.8 111 80.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.0e-45 186.8 108 83.3
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.3e-45 186.4 111 79.3
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.3e-45 186.4 111 79.3
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.3e-45 186.4 111 81.1
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 2.3e-45 185.7 111 80.2
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 2.3e-45 185.7 111 80.2
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 2.3e-45 185.7 111 80.2
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.3e-45 185.7 111 80.2
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 2.3e-45 185.7 111 80.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 3.0e-45 185.3 111 81.1
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 3.9e-45 184.9 111 80.2
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 5.1e-45 184.5 111 80.2
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.7e-45 184.1 111 80.2
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 8.7e-45 183.7 111 78.4
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.1e-44 183.3 111 80.2
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 3.3e-44 181.8 112 81.2
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 5.7e-44 181.0 111 78.4
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 7.4e-44 180.6 114 79.8
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 9.7e-44 180.3 111 77.5
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 9.7e-44 180.3 111 78.4
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 9.7e-44 180.3 111 78.4
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.3e-43 179.9 111 78.4
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.8e-43 178.7 107 80.4
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 9.0e-42 173.7 111 73.0
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 1.2e-41 173.3 158 58.2
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-41 173.3 110 69.1
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.6e-41 172.2 135 65.2
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 3.8e-40 168.3 111 72.1
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 3.8e-40 168.3 112 72.3
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.4e-39 166.4 164 56.7
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 7.2e-39 164.1 108 75.0
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-38 163.3 109 69.7
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 2.1e-38 162.5 111 68.5
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.0e-37 158.7 106 72.6
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.3e-35 153.3 98 73.5
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-32 143.7 108 67.6
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 3.3e-28 128.6 72 84.7
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 2.0e-25 119.4 111 57.7
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 9.4e-23 110.5 111 54.1
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.2e-16 89.4 48 85.4
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 8.3e-11 70.9 37 91.9
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.9e-07 59.7 39 64.1
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.5e-07 59.3 40 62.5


User provided reference genes

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