Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 1.0e-204 716.5 350 100.0
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 2.5e-171 605.5 350 84.6
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 3.9e-164 581.6 345 84.3
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 4.8e-162 574.7 352 79.8
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 1.7e-154 549.7 345 78.6
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.8e-151 538.5 347 76.9
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.0e-148 528.9 345 77.1
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 4.5e-136 488.4 362 69.3
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 5.6e-126 454.9 335 66.9
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 3.0e-124 449.1 313 70.9
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.8e-123 444.9 285 74.0
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 5.4e-121 438.3 345 63.8
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.5e-120 435.6 349 63.6
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 1.0e-119 434.1 306 69.0
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 1.7e-119 433.3 287 72.5
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.3e-119 433.0 287 72.1
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 3.0e-119 432.6 345 65.2
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 3.0e-119 432.6 347 65.4
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 3.9e-119 432.2 298 70.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 3.9e-119 432.2 346 64.2
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.0e-119 431.8 287 71.4
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 6.6e-119 431.4 313 68.1
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.1e-118 430.6 292 69.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.5e-118 430.3 290 71.0
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 4.3e-118 428.7 308 67.2
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 1.6e-117 426.8 285 70.2
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 2.8e-117 426.0 294 69.7
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.6e-117 425.6 288 70.1
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 4.7e-117 425.2 260 75.4
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 8.0e-117 424.5 299 68.6
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.4e-116 423.7 350 62.3
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.8e-116 423.3 312 68.6
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 1.8e-116 423.3 288 70.5
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 2.3e-116 422.9 296 69.3
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 2.3e-116 422.9 346 63.0
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.1e-116 422.5 259 75.7
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 3.1e-116 422.5 259 75.7
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 5.2e-116 421.8 332 65.1
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 5.2e-116 421.8 346 61.8
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 6.8e-116 421.4 347 60.8
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 8.9e-116 421.0 355 62.5
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 1.5e-115 420.2 311 65.6
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 2.0e-115 419.9 271 71.2
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.6e-115 419.5 320 66.9
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 3.4e-115 419.1 346 61.3
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 3.4e-115 419.1 323 64.4
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 4.4e-115 418.7 312 64.7
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 7.5e-115 417.9 292 67.5
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 1.7e-114 416.8 350 60.0
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.7e-114 416.8 260 74.2
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 2.4e-113 412.9 288 69.1
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 9.2e-113 411.0 336 63.7
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 9.2e-113 411.0 274 71.5
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 3.5e-112 409.1 285 69.5
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 6.0e-112 408.3 260 73.1
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.0e-111 407.5 306 66.3
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 1.0e-111 407.5 275 70.9
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 2.3e-111 406.4 305 64.9
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.9e-111 405.6 287 67.9
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 5.0e-111 405.2 335 59.7
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 6.6e-111 404.8 274 70.8
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.5e-110 402.9 306 66.3
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.8e-109 399.4 288 65.6
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 3.6e-109 399.1 274 69.3
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.2e-109 398.3 288 68.4
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 3.1e-108 396.0 326 61.3
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 6.8e-108 394.8 277 69.3
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 6.8e-108 394.8 267 69.7
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 8.9e-108 394.4 332 60.8
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 1.2e-107 394.0 264 70.5
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.3e-106 390.6 277 69.3
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.7e-106 390.2 259 70.7
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.7e-106 390.2 350 58.3
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.2e-106 389.8 292 64.0
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 2.2e-106 389.8 282 65.6
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 3.7e-106 389.0 295 65.1
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.9e-106 388.7 283 67.5
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-105 387.1 259 69.1
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.4e-105 387.1 276 69.2
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.4e-105 387.1 355 59.4
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 3.2e-105 386.0 259 68.3
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 7.1e-105 384.8 260 69.2
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 9.2e-105 384.4 290 63.8
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.7e-104 382.9 341 58.1
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 2.3e-103 379.8 302 61.3
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 6.6e-103 378.3 304 62.2
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-102 377.5 272 65.8
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 2.5e-102 376.3 262 68.3
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 4.3e-102 375.6 260 67.3
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 5.6e-102 375.2 341 56.6
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 7.3e-102 374.8 259 66.8
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 9.5e-102 374.4 273 65.9
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 1.4e-100 370.5 226 81.4
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.4e-100 369.8 224 77.2
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 4.0e-100 369.0 273 64.1
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 1.5e-99 367.1 299 59.9
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 5.8e-99 365.2 295 60.0
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 5.8e-99 365.2 331 59.5
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 8.4e-98 361.3 277 65.3
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 7.1e-97 358.2 332 58.4
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 9.2e-97 357.8 355 55.5
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 3.5e-96 355.9 332 58.1
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 3.5e-96 355.9 302 58.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 1.0e-95 354.4 314 58.6
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.3e-95 354.0 306 59.2
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 2.3e-95 353.2 332 56.3
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 6.6e-95 351.7 314 58.0
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 6.6e-95 351.7 276 60.9
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 5.6e-94 348.6 275 63.3
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 9.6e-94 347.8 352 54.0
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 1.2e-93 347.4 227 70.9
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 4.7e-93 345.5 314 58.3
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 2.4e-92 343.2 259 63.3
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 9.9e-91 337.8 319 56.4
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 1.3e-90 337.4 326 55.8
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 2.2e-90 336.7 273 59.3
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 1.1e-86 324.3 260 61.2
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 1.9e-86 323.6 271 54.2
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.6e-86 322.0 315 52.7
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.6e-85 319.3 298 53.0
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 4.8e-85 318.9 272 54.0
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 6.2e-85 318.5 397 45.3
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 1.8e-84 317.0 278 55.4
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.0e-83 313.5 358 49.7
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 3.8e-82 309.3 287 54.7
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 1.6e-80 303.9 286 54.9
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 2.3e-79 300.1 204 68.1
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 5.8e-75 285.4 184 72.8
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.3e-74 284.3 300 49.7
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.7e-74 283.9 236 59.7
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.9e-74 283.1 317 47.6
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 4.2e-73 279.3 347 46.1
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 1.2e-72 277.7 322 47.5
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 3.0e-71 273.1 290 46.6
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 2.0e-67 260.4 265 48.3
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 5.5e-65 252.3 176 67.6
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.8e-63 247.3 298 45.3
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 6.7e-63 245.4 264 48.9
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 9.7e-62 241.5 306 42.8
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.7e-61 239.6 162 70.4
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 4.8e-61 239.2 157 71.3
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.0e-60 235.0 191 64.4
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.2e-59 234.6 191 63.9
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 3.4e-59 233.0 147 72.8
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 3.4e-59 233.0 162 69.1
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 7.7e-59 231.9 147 72.1
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 2.2e-58 230.3 147 72.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 9.4e-57 224.9 326 41.1
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.1e-56 222.2 226 50.9
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 3.0e-55 219.9 547 31.6
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 5.1e-55 219.2 147 68.7
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.1e-54 218.0 171 62.0
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 3.1e-52 209.9 258 41.1
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 5.3e-52 209.1 159 63.5
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 1.6e-48 197.6 272 40.8
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 8.8e-47 191.8 211 46.4
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 3.8e-42 176.4 117 68.4
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 1.6e-40 171.0 109 70.6
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 4.7e-40 169.5 140 58.6
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 6.1e-40 169.1 134 60.4
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 8.2e-37 158.7 104 69.2
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.4e-36 157.1 109 63.3
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 7.0e-36 155.6 106 65.1
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 2.9e-34 150.2 104 67.3
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.5e-33 147.9 127 55.9
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 4.0e-31 139.8 186 45.2
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 9.7e-30 135.2 105 63.8
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 1.3e-29 134.8 138 50.0
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.1e-28 128.6 79 70.9
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 9.1e-28 128.6 79 70.9
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.0e-23 115.2 90 56.7
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 5.4e-20 102.8 74 62.2
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.2e-19 101.7 72 61.1
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 9.5e-17 92.0 60 63.3
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 6.8e-15 85.9 60 65.0
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.8e-12 77.8 50 68.0
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 1.7e-10 71.2 37 89.2
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 1.7e-10 71.2 65 55.4
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 4.0e-07 60.1 45 60.0
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 2.6e-06 57.4 43 60.5


User provided reference genes

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