Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 9.3e-37 156.4 80 100.0
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 7.2e-29 130.2 79 81.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 7.2e-29 130.2 79 81.0
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 1.2e-28 129.4 79 79.7
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.6e-28 129.0 79 81.0
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 2.1e-28 128.6 79 79.7
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 6.1e-28 127.1 79 79.7
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 6.1e-28 127.1 79 79.7
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.8e-27 125.6 79 77.2
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.3e-27 125.2 79 79.7
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 6.7e-27 123.6 79 75.9
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.5e-26 122.5 79 77.2
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 4.3e-26 120.9 79 75.9
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 4.5e-23 110.9 79 67.1
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 5.9e-23 110.5 79 65.8
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 1.3e-22 109.4 79 63.3
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 1.7e-22 109.0 79 64.6
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 2.2e-22 108.6 79 64.6
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 3.8e-22 107.8 79 63.3
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 6.5e-22 107.1 79 63.3
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 1.1e-21 106.3 79 63.3
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.9e-21 105.5 79 60.8
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 1.9e-21 105.5 78 61.5
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 2.5e-21 105.1 79 62.0
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 3.2e-21 104.8 79 63.3
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 3.2e-21 104.8 79 63.3
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 4.2e-21 104.4 79 59.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 5.5e-21 104.0 79 60.8
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 5.5e-21 104.0 79 62.0
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 5.5e-21 104.0 79 59.5
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 7.2e-21 103.6 79 62.0
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 7.2e-21 103.6 79 60.8
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.2e-20 102.8 79 63.3
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 1.2e-20 102.8 79 59.5
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.6e-20 102.4 79 62.0
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 2.1e-20 102.1 78 59.0
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 3.6e-20 101.3 79 58.2
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 3.6e-20 101.3 79 58.2
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 3.6e-20 101.3 79 60.8
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 4.7e-20 100.9 79 59.5
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 6.1e-20 100.5 79 62.0
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 6.1e-20 100.5 79 62.0
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 6.1e-20 100.5 79 62.0
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 6.1e-20 100.5 79 62.0
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.0e-19 99.8 79 60.8
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 1.0e-19 99.8 79 62.0
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.0e-19 99.8 79 62.0
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.0e-19 99.8 79 62.0
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.0e-19 99.8 79 62.0
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 1.4e-19 99.4 79 59.5
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 1.4e-19 99.4 79 58.2
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 3.9e-19 97.8 79 58.2
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 3.9e-19 97.8 79 57.0
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 3.9e-19 97.8 79 59.5
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 3.9e-19 97.8 79 58.2
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 5.1e-19 97.4 79 58.2
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 5.1e-19 97.4 79 58.2
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 6.7e-19 97.1 79 58.2
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 6.7e-19 97.1 79 58.2
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 6.7e-19 97.1 79 58.2
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 6.7e-19 97.1 79 58.2
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 8.8e-19 96.7 79 60.8
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 8.8e-19 96.7 79 60.8
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 2.0e-18 95.5 79 55.7
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 2.6e-18 95.1 79 58.2
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 2.6e-18 95.1 79 58.2
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 2.6e-18 95.1 80 57.5
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 3.3e-18 94.7 79 58.2
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 4.4e-18 94.4 79 54.4
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 4.4e-18 94.4 79 54.4
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 4.4e-18 94.4 79 57.0
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 7.4e-18 93.6 79 57.0
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 9.7e-18 93.2 79 57.0
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.3e-17 92.8 79 55.7
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 1.3e-17 92.8 80 56.2
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 2.8e-17 91.7 79 57.0
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 6.3e-17 90.5 80 56.2
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 8.2e-17 90.1 79 57.0
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.1e-16 89.7 79 51.9
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 1.4e-16 89.4 79 51.9
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 1.4e-16 89.4 78 51.3
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.8e-16 89.0 79 54.4
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 3.1e-16 88.2 79 55.7
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 3.1e-16 88.2 79 55.7
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 3.1e-16 88.2 79 55.7
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 3.1e-16 88.2 79 55.7
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 3.1e-16 88.2 79 55.7
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 3.1e-16 88.2 79 54.4
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 2.0e-15 85.5 79 50.6
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 4.5e-15 84.3 79 49.4
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 1.0e-14 83.2 77 49.4
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 1.5e-13 79.3 76 51.3
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 2.5e-13 78.6 57 61.4
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 4.2e-13 77.8 79 46.8
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 1.6e-12 75.9 57 66.7
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.6e-12 75.9 79 46.8
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.7e-12 74.3 83 49.4
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 1.8e-11 72.4 57 63.2
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 6.7e-11 70.5 57 54.4
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.1e-10 69.7 57 56.1
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 1.1e-10 69.7 57 52.6
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 4.4e-10 67.8 57 56.1
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.7e-09 65.9 77 45.5
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 2.8e-09 65.1 77 45.5
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 3.1e-08 61.6 66 40.9


User provided reference genes

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