Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1426.8 697 100.0
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1370.5 697 95.1
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1364.4 698 95.0
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1361.7 697 95.0
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1324.7 698 91.4
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1314.3 693 91.6
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1313.5 697 91.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1312.7 697 89.5
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1312.0 697 89.5
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1312.0 697 90.8
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1308.5 697 90.2
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1294.3 697 89.7
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1291.6 697 89.4
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1228.0 698 83.4
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1224.9 697 84.1
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1221.8 698 83.0
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1221.1 698 83.1
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 698 81.9
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1212.2 696 82.5
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1209.1 698 83.1
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 698 82.1
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1193.7 692 82.2
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1193.3 698 81.5
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1191.0 675 84.0
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1187.9 698 81.1
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1186.4 695 81.3
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 694 82.4
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 694 82.7
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 695 80.7
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 694 82.1
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 698 80.9
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 692 81.5
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1181.4 695 80.4
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 700 81.0
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 694 82.1
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 698 81.9
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 699 80.3
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 694 80.5
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 694 81.3
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1174.5 698 79.9
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1171.4 695 80.4
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 698 79.4
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1167.9 695 79.9
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1166.4 697 80.2
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 693 79.5
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1162.9 698 78.4
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1162.1 694 79.8
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1160.2 695 79.9
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 695 79.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 697 80.2
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 695 79.0
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1154.4 695 79.4
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 693 79.7
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1153.3 695 79.4
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 695 79.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1151.3 700 79.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 694 79.0
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 720 77.2
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1146.3 693 79.9
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1146.0 695 78.8
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 693 79.2
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 695 79.0
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1141.3 695 78.6
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 697 78.6
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 695 78.3
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1136.3 694 77.2
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 698 78.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1135.6 694 77.2
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1130.9 694 78.4
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1130.5 694 76.7
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 695 77.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1127.9 694 76.7
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1124.4 692 78.5
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 696 77.3
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1119.0 694 75.8
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1118.2 695 75.8
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 694 75.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1112.4 696 76.0
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1110.5 696 76.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1108.2 698 77.4
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1105.1 718 75.5
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1105.1 698 76.8
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1104.7 693 75.2
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1097.4 747 71.6
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1096.3 647 81.0
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1095.9 680 77.6
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1095.9 680 77.6
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1093.2 692 76.4
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1090.9 740 73.9
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 718 74.0
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 698 73.8
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1080.9 699 75.4
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 719 71.9
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 4.3e-311 1070.8 615 82.6
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 7.2e-311 1070.1 699 73.8
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 4.7e-310 1067.4 695 75.7
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.6e-302 1042.3 698 73.9
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 8.1e-302 1040.0 677 73.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.4e-298 1027.3 585 82.6
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 2.0e-292 1008.8 705 70.4
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.7e-291 1005.7 702 69.9
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 4.7e-286 987.6 696 69.4
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 5.1e-280 967.6 641 73.8
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 1.1e-269 933.3 539 82.4
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 3.7e-262 908.3 712 66.3
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.6e-257 892.9 581 73.0
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 7.4e-239 830.9 699 58.9
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.8e-232 809.7 538 73.0
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 2.0e-223 779.6 699 55.7
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.8e-221 773.1 701 55.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.8e-221 773.1 701 55.8
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-220 769.2 703 55.6
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.3e-219 766.9 471 78.1
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.5e-215 753.4 710 55.5
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.4e-213 746.1 704 53.8
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.6e-188 662.1 386 81.1
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.2e-158 563.5 720 43.8
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.3e-147 526.9 375 69.9
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 4.5e-135 486.1 506 53.4
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 3.8e-110 403.3 762 35.6
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 8.0e-108 395.6 248 77.8
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.5e-101 374.8 815 32.0
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.4e-98 363.6 268 66.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.3e-94 351.7 344 54.4
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.8e-75 288.1 179 74.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 6.8e-75 286.2 242 62.4
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 2.0e-74 284.6 247 61.1
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 7.3e-69 266.2 184 69.6
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.3e-67 261.2 165 75.2
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 2.9e-65 254.2 610 32.1
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 8.1e-60 236.1 235 53.2
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.2e-48 197.6 127 70.9
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.8e-43 181.8 138 70.3
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 9.3e-40 169.5 140 62.9
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.4e-35 155.6 93 79.6
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.4e-35 155.6 216 43.1
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 5.6e-29 133.7 75 80.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.3e-28 132.5 76 80.3
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 3.4e-26 124.4 84 70.2
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 4.1e-19 100.9 90 54.4
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.4e-16 92.4 86 57.0
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.1e-11 74.7 49 71.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 2.6e-10 71.6 49 65.3
HanXRQChr15g0473031 Helianthus annuus HOM05D005163 ORTHO05D220685 3.9e-06 57.8 32 87.5


User provided reference genes

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