Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 1.2e-56 223.0 119 100.0
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 9.6e-30 133.7 119 57.1
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 2.8e-29 132.1 121 60.3
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 1.8e-28 129.4 117 58.1
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 6.5e-26 120.9 116 51.7
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 8.7e-23 110.5 123 46.3
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 1.5e-22 109.8 111 50.5
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 3.3e-22 108.6 117 57.3
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 4.3e-22 108.2 118 46.6
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.3e-22 108.2 123 45.5
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 4.3e-22 108.2 120 45.8
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 9.7e-22 107.1 120 45.8
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 9.7e-22 107.1 121 45.5
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 1.6e-21 106.3 119 49.6
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 3.7e-21 105.1 117 47.9
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 3.7e-21 105.1 115 46.1
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 4.8e-21 104.8 125 43.2
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 4.8e-21 104.8 124 43.5
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 4.8e-21 104.8 120 46.7
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 6.3e-21 104.4 124 44.4
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 8.2e-21 104.0 121 44.6
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 1.1e-20 103.6 116 48.3
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 1.1e-20 103.6 118 44.1
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.4e-20 103.2 122 46.7
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 2.4e-20 102.4 121 43.8
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 4.1e-20 101.7 126 43.7
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 4.1e-20 101.7 117 46.2
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 5.3e-20 101.3 127 42.5
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 5.3e-20 101.3 126 39.7
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 5.3e-20 101.3 118 44.1
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 6.9e-20 100.9 123 43.9
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.9e-20 100.9 121 43.0
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 9.0e-20 100.5 119 42.0
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 1.2e-19 100.1 120 45.0
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.5e-19 99.8 122 43.4
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 1.5e-19 99.8 118 44.1
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 1.5e-19 99.8 121 43.0
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.5e-19 99.8 119 51.3
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.5e-19 99.8 127 40.9
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 2.0e-19 99.4 117 42.7
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 2.0e-19 99.4 121 43.8
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.6e-19 99.0 116 44.8
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.6e-19 99.0 118 43.2
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.6e-19 99.0 118 43.2
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 3.4e-19 98.6 121 43.8
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 3.4e-19 98.6 126 41.3
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 4.5e-19 98.2 123 43.1
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 4.5e-19 98.2 78 56.4
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 4.5e-19 98.2 121 43.0
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 4.5e-19 98.2 120 50.0
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 7.7e-19 97.4 123 41.5
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 7.7e-19 97.4 121 42.1
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 7.7e-19 97.4 122 41.8
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 7.7e-19 97.4 126 40.5
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 1.0e-18 97.1 126 42.1
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 1.3e-18 96.7 122 41.8
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.3e-18 96.7 124 50.8
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.3e-18 96.7 114 43.9
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.7e-18 96.3 122 41.0
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 2.2e-18 95.9 122 41.8
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 2.2e-18 95.9 122 41.8
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 2.2e-18 95.9 121 43.0
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 2.2e-18 95.9 118 43.2
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.9e-18 95.5 122 41.0
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 2.9e-18 95.5 118 42.4
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.9e-18 95.5 118 43.2
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 3.8e-18 95.1 125 42.4
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 3.8e-18 95.1 120 42.5
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 3.8e-18 95.1 118 44.1
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 5.0e-18 94.7 124 42.7
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 5.0e-18 94.7 120 37.5
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 5.0e-18 94.7 119 39.5
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 6.5e-18 94.4 117 48.7
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 8.5e-18 94.0 119 43.7
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 8.5e-18 94.0 130 40.0
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 8.5e-18 94.0 126 40.5
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 1.4e-17 93.2 85 56.5
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 2.5e-17 92.4 115 40.0
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 3.2e-17 92.0 116 41.4
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 3.2e-17 92.0 119 42.0
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 3.2e-17 92.0 125 40.8
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 3.2e-17 92.0 130 40.8
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 4.2e-17 91.7 117 41.9
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 4.2e-17 91.7 122 40.2
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 5.5e-17 91.3 128 35.9
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 7.2e-17 90.9 137 38.7
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 9.4e-17 90.5 134 35.8
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 1.2e-16 90.1 115 38.3
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 1.2e-16 90.1 62 59.7
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 1.2e-16 90.1 123 37.4
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 1.2e-16 90.1 117 39.3
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 1.2e-16 90.1 121 39.7
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.2e-16 90.1 126 40.5
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.6e-16 89.7 127 46.5
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.6e-16 89.7 132 37.9
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.1e-16 89.4 136 37.5
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 2.1e-16 89.4 129 36.4
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 2.1e-16 89.4 122 39.3
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 2.7e-16 89.0 132 37.1
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 4.6e-16 88.2 115 40.0
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 4.6e-16 88.2 126 39.7
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 4.6e-16 88.2 127 37.0
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 6.1e-16 87.8 117 41.0
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 6.1e-16 87.8 135 37.8
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 7.9e-16 87.4 124 47.6
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 7.9e-16 87.4 118 41.5
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 2.3e-15 85.9 111 42.3
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 2.3e-15 85.9 123 43.9
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 3.0e-15 85.5 117 36.8
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 3.9e-15 85.1 125 36.0
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 5.1e-15 84.7 123 43.1
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 1.5e-14 83.2 126 33.3
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 2.5e-14 82.4 119 37.0
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 4.3e-14 81.6 73 53.4
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 5.7e-14 81.3 61 57.4
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 7.4e-14 80.9 118 33.1
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 7.4e-14 80.9 81 40.7
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.2e-13 79.3 77 45.5
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 6.3e-13 77.8 64 54.7
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 3.1e-12 75.5 80 40.0
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 4.1e-12 75.1 49 65.3
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 6.9e-12 74.3 54 57.4
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 1.5e-11 73.2 127 32.3
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 2.0e-11 72.8 71 40.8
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 3.4e-11 72.0 64 45.3
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 3.4e-11 72.0 87 33.3
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 3.4e-11 72.0 134 32.8
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 5.9e-11 71.2 78 41.0
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 7.7e-11 70.9 74 43.2
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 2.2e-10 69.3 66 50.0
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 8.5e-10 67.4 83 31.3
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 2.5e-09 65.9 54 51.9
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 3.2e-09 65.5 82 40.2
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 7.2e-09 64.3 56 48.2
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 9.4e-09 63.9 80 36.2
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 3.6e-08 62.0 59 40.7
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 4.7e-08 61.6 58 43.1
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 7.9e-08 60.8 58 44.8
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.0e-06 56.2 41 61.0


User provided reference genes

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