Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 2.1e-168 595.5 284 100.0
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.8e-130 469.5 313 74.8
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 2.0e-129 466.1 271 83.0
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 8.8e-122 440.7 319 69.9
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 3.8e-117 425.2 314 68.8
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 1.8e-114 416.4 268 73.9
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 8.3e-112 407.5 269 73.2
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 3.1e-111 405.6 270 73.0
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 5.4e-111 404.8 268 73.1
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 2.9e-109 399.1 267 72.7
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 7.2e-108 394.4 269 71.0
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.4e-103 380.2 271 66.1
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 2.7e-102 375.9 274 66.1
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 8.6e-101 370.9 265 64.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-100 370.5 273 65.9
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.1e-100 370.5 268 67.9
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.9e-100 369.8 268 67.9
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 2.5e-100 369.4 273 65.6
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 4.3e-100 368.6 271 64.9
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 7.2e-100 367.9 271 64.6
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 7.2e-100 367.9 270 64.8
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 7.2e-100 367.9 268 67.2
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.8e-99 365.9 270 64.8
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 3.6e-99 365.5 273 65.2
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.0e-98 364.0 267 65.2
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.0e-98 364.0 269 66.9
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 3.0e-98 362.5 270 64.8
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 3.0e-98 362.5 267 64.8
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 4.0e-98 362.1 277 62.5
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 6.8e-98 361.3 267 64.4
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 3.4e-97 359.0 270 63.3
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 7.5e-97 357.8 268 64.2
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 9.8e-97 357.5 270 64.1
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 9.8e-97 357.5 272 64.7
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 9.8e-97 357.5 267 62.9
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 3.7e-96 355.5 267 63.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 4.9e-96 355.1 270 61.9
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.1e-95 354.0 269 63.9
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 1.8e-95 353.2 270 63.3
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 2.4e-95 352.8 267 62.5
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 3.2e-95 352.4 269 62.8
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 4.1e-95 352.1 269 63.2
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 4.6e-94 348.6 273 62.3
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 4.6e-94 348.6 273 62.3
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 7.8e-94 347.8 269 61.3
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.0e-93 347.4 268 62.7
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 3.0e-93 345.9 267 61.4
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 5.0e-93 345.1 267 60.7
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 8.6e-93 344.4 268 61.9
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 1.2e-91 340.5 270 61.5
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.6e-91 340.1 278 59.0
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 3.6e-91 339.0 330 54.8
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 4.7e-91 338.6 270 61.5
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 4.7e-91 338.6 269 59.1
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 6.2e-91 338.2 270 60.7
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 3.1e-90 335.9 270 61.1
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 5.2e-90 335.1 270 60.7
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 5.2e-90 335.1 270 61.1
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 1.5e-89 333.6 270 60.7
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 2.0e-89 333.2 269 61.0
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 3.4e-89 332.4 270 61.1
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 3.4e-89 332.4 270 61.1
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 3.4e-89 332.4 270 61.1
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 4.4e-89 332.0 270 60.7
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 5.8e-89 331.6 272 60.3
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 7.5e-89 331.3 272 60.3
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 9.8e-89 330.9 271 60.5
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 9.8e-89 330.9 271 60.5
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 9.8e-89 330.9 263 60.1
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.3e-88 330.5 271 60.9
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.3e-88 330.5 271 60.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.7e-88 330.1 271 59.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 1.7e-88 330.1 271 59.8
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.7e-88 330.1 270 58.9
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.9e-88 329.3 275 58.5
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.1e-87 327.4 257 61.1
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.1e-87 327.4 272 59.6
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-87 326.6 263 60.8
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-87 326.6 263 59.7
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 5.4e-87 325.1 270 58.9
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.2e-86 323.9 234 67.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.3e-84 315.5 378 45.5
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 5.6e-84 315.1 269 57.6
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 5.6e-84 315.1 340 50.0
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 5.6e-84 315.1 304 52.6
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 9.5e-84 314.3 270 58.9
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-83 313.9 298 53.0
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 3.6e-83 312.4 249 60.6
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 6.8e-82 308.1 241 60.6
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.6e-81 306.2 371 44.7
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 9.2e-79 297.7 271 54.6
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.3e-77 293.1 275 56.0
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 3.9e-77 292.4 269 54.3
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.1e-76 290.8 295 50.5
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 3.6e-75 285.8 267 55.1
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 3.6e-75 285.8 235 61.3
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 6.8e-74 281.6 253 54.9
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 8.4e-72 274.6 310 46.8
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 8.4e-72 274.6 162 78.4
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 8.9e-66 254.6 251 51.4
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 6.4e-64 248.4 268 50.4
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-61 240.7 137 78.1
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.5e-57 227.3 258 47.7
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 4.4e-57 225.7 310 42.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 9.9e-57 224.6 213 51.6
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.3e-56 224.2 200 56.5
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 2.9e-56 223.0 232 47.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.7e-54 216.5 294 44.6
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 6.0e-54 215.3 182 57.7
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 9.0e-50 201.4 186 55.4
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 8.4e-48 194.9 255 43.1
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 3.9e-45 186.0 247 40.1
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 3.4e-41 172.9 195 48.2
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.5e-33 147.5 187 43.9
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.2e-32 143.7 87 73.6
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.3e-27 127.9 85 68.2
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 4.2e-23 112.8 96 55.2
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 3.6e-22 109.8 61 75.4
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 6.1e-22 109.0 117 49.6
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.0e-21 108.2 78 62.8
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.4e-21 107.8 87 52.9
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.4e-21 107.8 87 52.9
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 8.8e-21 105.1 83 56.6
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 7.4e-20 102.1 63 71.4
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.3e-19 101.3 53 77.4
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.8e-19 100.1 84 54.8
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.1e-18 98.2 52 78.8
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 6.9e-18 95.5 90 52.2
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 9.1e-18 95.1 90 52.2
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 5.9e-17 92.4 91 51.6
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 3.8e-16 89.7 85 51.8
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 7.2e-15 85.5 76 53.9
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.8e-13 78.6 57 61.4
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.1e-12 78.2 56 60.7
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.3e-12 76.6 60 60.0
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.7e-11 74.3 36 77.8
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 3.7e-11 73.2 38 71.1
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 6.3e-11 72.4 91 42.9
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 2.7e-06 57.0 40 57.5
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 2.7e-06 57.0 40 57.5


User provided reference genes

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