Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 2.2e-293 1011.5 511 100.0
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 5.2e-282 973.8 514 95.5
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.1e-263 912.9 513 89.7
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 1.1e-263 912.9 513 90.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 2.5e-260 901.7 513 87.5
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.9e-252 875.5 513 85.6
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 8.9e-250 866.7 513 84.2
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 5.1e-245 850.9 511 83.8
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 9.6e-244 846.7 515 83.1
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.1e-243 843.6 512 81.6
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 8.1e-243 843.6 512 81.6
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.4e-240 833.9 512 80.5
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.1e-239 833.2 512 80.5
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.9e-236 822.4 513 81.1
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 4.6e-222 774.6 510 74.7
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 2.5e-220 768.8 509 74.7
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 7.4e-220 767.3 509 73.5
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.6e-219 766.1 507 72.8
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.8e-219 765.4 507 72.8
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 4.8e-219 764.6 482 77.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 8.2e-219 763.8 481 76.1
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.4e-218 762.3 507 72.8
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 2.4e-218 762.3 509 73.7
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 9.0e-218 760.4 484 75.8
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 4.5e-217 758.1 494 75.7
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 4.5e-217 758.1 510 72.9
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.0e-216 756.9 483 75.6
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 1.7e-216 756.1 487 76.2
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 4.2e-215 751.5 510 72.7
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 9.3e-215 750.4 510 72.4
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.7e-214 748.8 511 71.8
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.3e-213 746.5 509 72.1
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.3e-213 745.7 509 72.1
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.9e-213 745.0 490 73.1
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 3.3e-212 741.9 507 72.6
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 2.2e-211 739.2 482 74.3
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.8e-211 738.0 481 74.2
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 6.3e-211 737.6 482 74.1
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 2.4e-210 735.7 478 74.3
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.4e-210 735.7 509 69.9
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 2.6e-209 732.3 510 70.2
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 1.7e-208 729.6 474 74.5
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.2e-208 729.2 509 68.8
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 8.5e-208 727.2 512 69.1
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 4.2e-207 724.9 476 73.7
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.2e-206 723.4 483 72.0
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.6e-206 723.0 493 72.2
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 1.6e-206 723.0 487 71.9
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.4e-205 719.9 482 71.4
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 1.8e-205 719.5 494 70.6
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 3.9e-205 718.4 494 72.5
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 4.4e-204 714.9 489 70.1
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 9.7e-204 713.8 491 70.7
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 3.7e-203 711.8 504 69.0
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 3.7e-203 711.8 477 73.0
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 6.3e-203 711.1 511 68.1
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 8.2e-203 710.7 512 68.2
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 5.3e-202 708.0 473 71.5
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 3.4e-201 705.3 481 69.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 5.9e-201 704.5 481 69.4
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.3e-200 703.4 508 68.5
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 2.9e-200 702.2 468 72.6
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.5e-200 701.0 510 65.9
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 8.5e-200 700.7 507 66.7
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 1.9e-199 699.5 478 70.3
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-199 699.5 450 74.2
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 2.7e-198 695.7 510 67.1
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 6.1e-198 694.5 504 67.1
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 1.0e-197 693.7 502 66.9
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 1.4e-197 693.3 472 70.8
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.8e-197 693.0 510 65.7
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 3.0e-197 692.2 442 76.7
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 3.9e-197 691.8 509 67.2
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 5.2e-197 691.4 485 68.2
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.1e-196 690.3 482 68.5
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.1e-196 690.3 482 68.5
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.1e-196 690.3 482 68.5
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 1.1e-196 690.3 510 65.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 1.5e-196 689.9 508 67.3
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.0e-196 689.5 485 68.5
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 5.7e-196 688.0 508 66.9
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 2.8e-195 685.6 505 67.3
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 3.7e-195 685.3 490 66.1
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.7e-195 685.3 509 65.4
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 6.3e-195 684.5 509 67.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.2e-190 670.2 473 68.3
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.2e-187 659.4 442 70.6
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.2e-187 659.4 440 71.6
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 4.8e-187 658.3 440 72.3
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 4.1e-186 655.2 508 63.4
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 5.3e-186 654.8 478 65.5
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 7.0e-186 654.4 466 67.2
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 9.1e-186 654.1 484 65.1
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.6e-185 653.3 456 69.7
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 7.7e-185 651.0 480 65.4
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.7e-184 649.8 488 66.0
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.0e-181 638.6 474 67.7
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 5.2e-181 638.3 465 65.4
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 2.6e-180 636.0 442 70.4
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 3.4e-180 635.6 406 74.6
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 7.0e-178 627.9 474 63.5
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.3e-176 623.6 508 63.0
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 1.7e-176 623.2 491 62.9
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 4.2e-175 618.6 456 65.4
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.7e-171 606.7 471 63.3
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.7e-171 605.5 468 65.0
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.7e-169 599.4 385 73.5
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 2.3e-168 596.3 394 73.6
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 9.5e-167 590.9 477 63.5
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 3.2e-162 575.9 442 65.6
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.7e-161 572.8 482 62.4
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 5.0e-160 568.5 350 82.3
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 7.3e-151 538.1 480 57.1
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 2.1e-150 536.6 469 57.8
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 2.4e-146 523.1 503 54.7
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 2.8e-142 509.6 475 54.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 8.9e-141 504.6 300 86.0
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 4.4e-140 502.3 300 85.3
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 9.6e-135 484.6 329 71.1
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 1.8e-133 480.3 319 73.0
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.8e-131 472.6 338 67.5
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 7.8e-129 464.9 468 50.6
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 4.6e-121 439.1 470 50.4
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 6.7e-112 408.7 380 56.6
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.1e-110 403.7 281 69.0
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 3.9e-96 356.3 556 41.4
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 5.1e-96 355.9 250 71.2
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 8.7e-96 355.1 607 37.1
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 4.2e-82 309.7 470 40.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.5e-76 290.0 463 39.5
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 7.7e-68 262.3 211 64.0
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.3e-64 250.8 154 76.6
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 4.7e-49 199.9 241 49.8
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 4.9e-46 189.9 175 57.1
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 1.2e-39 168.7 302 38.4
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.6e-36 156.8 108 76.9
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.6e-36 156.8 242 40.1
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.6e-33 148.3 119 58.0
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.4e-29 134.4 87 65.5
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 1.3e-27 128.6 100 62.0
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 2.7e-20 104.4 69 66.7
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 1.7e-19 101.7 90 57.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.9e-18 98.2 68 80.9
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 3.3e-18 97.4 70 62.9
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 2.0e-07 61.6 36 77.8


User provided reference genes

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